RNA–Protein interactions for RNA: ENST00000475146.1

CPNE1-223, Transcript of copine 1, human

TSL 3

Gene CPNE1, Length 627 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-223	ENST00000475146	MMP13	P45452	471 aa		24.24	■■□□□ 1.47
CPNE1-223	ENST00000475146	GALNT2	Q10471	571 aa		24.24	■■□□□ 1.47
CPNE1-223	ENST00000475146	TCEAL1	Q15170	157 aa		24.24	■■□□□ 1.47
CPNE1-223	ENST00000475146	ODF2	Q5BJF6	829 aa		24.24	■■□□□ 1.47
CPNE1-223	ENST00000475146	MARC1	Q5VT66	337 aa		24.24	■■□□□ 1.47
CPNE1-223	ENST00000475146	ERAP2	Q6P179	960 aa		24.24	■■□□□ 1.47
CPNE1-223	ENST00000475146	KYAT3	Q6YP21	454 aa	Known RBP	24.24	■■□□□ 1.47
CPNE1-223	ENST00000475146		Q6ZSR6	202 aa		24.24	■■□□□ 1.47
CPNE1-223	ENST00000475146	ABI3BP	Q7Z7G0	1075 aa		24.24	■■□□□ 1.47
CPNE1-223	ENST00000475146	ZSWIM9	Q86XI8	627 aa		24.24	■■□□□ 1.47
CPNE1-223	ENST00000475146	LRRC49	Q8IUZ0	686 aa		24.24	■■□□□ 1.47
CPNE1-223	ENST00000475146	CDC6	Q99741	560 aa		24.24	■■□□□ 1.47
CPNE1-223	ENST00000475146	SCUBE2	Q9NQ36	999 aa		24.24	■■□□□ 1.47
CPNE1-223	ENST00000475146	HYOU1	Q9Y4L1	999 aa		24.24	■■□□□ 1.47
CPNE1-223	ENST00000475146	PCDHA13	Q9Y5I0	950 aa		24.24	■■□□□ 1.47
CPNE1-223	ENST00000475146	HS3ST3A1	Q9Y663	406 aa		24.24	■■□□□ 1.47
CPNE1-223	ENST00000475146	TTC24	A2A3L6	582 aa	Predicted RBP	24.23	■■□□□ 1.47
CPNE1-223	ENST00000475146	FPGT	O14772	594 aa		24.23	■■□□□ 1.47
CPNE1-223	ENST00000475146	SPOP	O43791	374 aa		24.23	■■□□□ 1.47
CPNE1-223	ENST00000475146	TM7SF2	O76062	418 aa		24.23	■■□□□ 1.47
CPNE1-223	ENST00000475146	LCA5L	O95447	670 aa		24.23	■■□□□ 1.47
CPNE1-223	ENST00000475146	PRKCG	P05129	697 aa		24.23	■■□□□ 1.47
CPNE1-223	ENST00000475146	SLC1A1	P43005	524 aa		24.23	■■□□□ 1.47
CPNE1-223	ENST00000475146	RXRG	P48443	463 aa		24.23	■■□□□ 1.47
CPNE1-223	ENST00000475146	PGBD5	Q8N414	524 aa		24.23	■■□□□ 1.47
CPNE1-223	ENST00000475146	PQLC3	Q8N755	202 aa		24.23	■■□□□ 1.47
CPNE1-223	ENST00000475146	DENND6B	Q8NEG7	585 aa		24.23	■■□□□ 1.47
CPNE1-223	ENST00000475146	FAM174A	Q8TBP5	190 aa		24.23	■■□□□ 1.47
CPNE1-223	ENST00000475146	TRAF3IP1	Q8TDR0	691 aa	Predicted RBP	24.23	■■□□□ 1.47
CPNE1-223	ENST00000475146	ASB12	Q8WXK4	309 aa		24.23	■■□□□ 1.47
CPNE1-223	ENST00000475146	MGME1	Q9BQP7	344 aa		24.23	■■□□□ 1.47
CPNE1-223	ENST00000475146	C1QTNF7	Q9BXJ2	289 aa		24.23	■■□□□ 1.47
CPNE1-223	ENST00000475146	ATP8A1	Q9Y2Q0	1164 aa		24.23	■■□□□ 1.47
CPNE1-223	ENST00000475146	SHROOM3	Q8TF72	1996 aa		24.23	■■□□□ 1.47
CPNE1-223	ENST00000475146	LOC107983988	A0A1B0GUW6	1196 aa	Predicted RBP	24.22	■■□□□ 1.47
CPNE1-223	ENST00000475146	POM121B	A6NF01	834 aa		24.22	■■□□□ 1.47
CPNE1-223	ENST00000475146	SOWAHD	A6NJG2	315 aa		24.22	■■□□□ 1.47
CPNE1-223	ENST00000475146	MAX	P61244	160 aa		24.22	■■□□□ 1.47
CPNE1-223	ENST00000475146	GBE1	Q04446	702 aa		24.22	■■□□□ 1.47
CPNE1-223	ENST00000475146	TMEM52B	Q4KMG9	183 aa		24.22	■■□□□ 1.47
CPNE1-223	ENST00000475146	TIGD7	Q6NT04	549 aa	Predicted RBP	24.22	■■□□□ 1.47
CPNE1-223	ENST00000475146	RHOT1	Q8IXI2	618 aa		24.22	■■□□□ 1.47
CPNE1-223	ENST00000475146	BAHD1	Q8TBE0	780 aa	Predicted RBP	24.22	■■□□□ 1.47
CPNE1-223	ENST00000475146	SAP25	Q8TEE9	199 aa		24.22	■■□□□ 1.47
CPNE1-223	ENST00000475146	BMF	Q96LC9	184 aa		24.22	■■□□□ 1.47
CPNE1-223	ENST00000475146	LENG8	Q96PV6	779 aa	Predicted RBP	24.22	■■□□□ 1.47
CPNE1-223	ENST00000475146	RNF157	Q96PX1	679 aa		24.22	■■□□□ 1.47
CPNE1-223	ENST00000475146	NUDCD1	Q96RS6	583 aa		24.22	■■□□□ 1.47
CPNE1-223	ENST00000475146	KLF6	Q99612	283 aa	Predicted RBP	24.22	■■□□□ 1.47
CPNE1-223	ENST00000475146	NT5M	Q9NPB1	228 aa		24.22	■■□□□ 1.47
CPNE1-223	ENST00000475146	TFR2	Q9UP52	801 aa		24.22	■■□□□ 1.47
CPNE1-223	ENST00000475146	RIOK3	O14730	519 aa	Known RBP	24.21	■■□□□ 1.47
CPNE1-223	ENST00000475146	SDC3	O75056	442 aa		24.21	■■□□□ 1.47
CPNE1-223	ENST00000475146	IPO7	O95373	1038 aa	Known RBP	24.21	■■□□□ 1.47
CPNE1-223	ENST00000475146	FTH1P19	P0C7X4	201 aa		24.21	■■□□□ 1.47
CPNE1-223	ENST00000475146	COMT	P21964	271 aa		24.21	■■□□□ 1.47
CPNE1-223	ENST00000475146	SEMG2	Q02383	582 aa		24.21	■■□□□ 1.47
CPNE1-223	ENST00000475146	BNIP3	Q12983	259 aa		24.21	■■□□□ 1.47
CPNE1-223	ENST00000475146	IFI16	Q16666	785 aa	Known RBP	24.21	■■□□□ 1.47
CPNE1-223	ENST00000475146	LRRC38	Q5VT99	294 aa		24.21	■■□□□ 1.47
CPNE1-223	ENST00000475146	GLRX5	Q86SX6	157 aa		24.21	■■□□□ 1.47
CPNE1-223	ENST00000475146	TMTC1	Q8IUR5	882 aa		24.21	■■□□□ 1.47
CPNE1-223	ENST00000475146	SLC22A18AS	Q8N1D0	253 aa		24.21	■■□□□ 1.47
CPNE1-223	ENST00000475146	ECHDC3	Q96DC8	303 aa		24.21	■■□□□ 1.47
CPNE1-223	ENST00000475146	NSMCE3	Q96MG7	304 aa		24.21	■■□□□ 1.47
CPNE1-223	ENST00000475146	ZNF830	Q96NB3	372 aa	Predicted RBP	24.21	■■□□□ 1.47
CPNE1-223	ENST00000475146	ANKRD36	A6QL64	1941 aa		24.21	■■□□□ 1.47
CPNE1-223	ENST00000475146	NEBL	O76041	1014 aa		24.2	■■□□□ 1.46
CPNE1-223	ENST00000475146	CR2	P20023	1033 aa		24.2	■■□□□ 1.46
CPNE1-223	ENST00000475146	MX2	P20592	715 aa		24.2	■■□□□ 1.46
CPNE1-223	ENST00000475146	MMP12	P39900	470 aa		24.2	■■□□□ 1.46
CPNE1-223	ENST00000475146	RABIF	P47224	123 aa		24.2	■■□□□ 1.46
CPNE1-223	ENST00000475146	SHC2	P98077	582 aa		24.2	■■□□□ 1.46
CPNE1-223	ENST00000475146	DCP2	Q8IU60	420 aa	Known RBP	24.2	■■□□□ 1.46
CPNE1-223	ENST00000475146	PDCD6IP	Q8WUM4	868 aa	Known RBP	24.2	■■□□□ 1.46
CPNE1-223	ENST00000475146	RNF25	Q96BH1	459 aa	Predicted RBP	24.2	■■□□□ 1.46
CPNE1-223	ENST00000475146	MAK16	Q9BXY0	300 aa	Known RBP	24.2	■■□□□ 1.46
CPNE1-223	ENST00000475146	NOD2	Q9HC29	1040 aa		24.2	■■□□□ 1.46
CPNE1-223	ENST00000475146	DDX56	Q9NY93	547 aa	Known RBP	24.2	■■□□□ 1.46
CPNE1-223	ENST00000475146	FTSJ1	Q9UET6	329 aa		24.2	■■□□□ 1.46
CPNE1-223	ENST00000475146	APOBEC2	Q9Y235	224 aa	Known RBP	24.2	■■□□□ 1.46
CPNE1-223	ENST00000475146	COQ6	Q9Y2Z9	468 aa		24.2	■■□□□ 1.46
CPNE1-223	ENST00000475146	PCDHGC4	Q9Y5F7	938 aa		24.2	■■□□□ 1.46
CPNE1-223	ENST00000475146	EPN1	Q9Y6I3	576 aa	Predicted RBP	24.2	■■□□□ 1.46
CPNE1-223	ENST00000475146	GOLGA8CP	A6NN73	597 aa		24.19	■■□□□ 1.46
CPNE1-223	ENST00000475146	ZNF487	B1APH4	448 aa		24.19	■■□□□ 1.46
CPNE1-223	ENST00000475146	TRAFD1	O14545	582 aa	Predicted RBP	24.19	■■□□□ 1.46
CPNE1-223	ENST00000475146	SOCS5	O75159	536 aa		24.19	■■□□□ 1.46
CPNE1-223	ENST00000475146	NDUFA10	O95299	355 aa		24.19	■■□□□ 1.46
CPNE1-223	ENST00000475146	TOP3B	O95985	862 aa	Known RBP	24.19	■■□□□ 1.46
CPNE1-223	ENST00000475146	C6	P13671	934 aa		24.19	■■□□□ 1.46
CPNE1-223	ENST00000475146	FECH	P22830	423 aa		24.19	■■□□□ 1.46
CPNE1-223	ENST00000475146	IGFALS	P35858	605 aa		24.19	■■□□□ 1.46
CPNE1-223	ENST00000475146	HADHB	P55084	474 aa	Known RBP	24.19	■■□□□ 1.46
CPNE1-223	ENST00000475146	POLR2L	P62875	67 aa	Known RBP	24.19	■■□□□ 1.46
CPNE1-223	ENST00000475146	ITK	Q08881	620 aa		24.19	■■□□□ 1.46
CPNE1-223	ENST00000475146	KDM7A	Q6ZMT4	941 aa		24.19	■■□□□ 1.46
CPNE1-223	ENST00000475146	EID2	Q8N6I1	236 aa		24.19	■■□□□ 1.46
CPNE1-223	ENST00000475146	LRRN4	Q8WUT4	740 aa		24.19	■■□□□ 1.46
CPNE1-223	ENST00000475146	GOLPH3	Q9H4A6	298 aa		24.19	■■□□□ 1.46

Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms