RNA–Protein interactions for RNA: ENST00000474643.5

VARS-223, Transcript of valyl-tRNA synthetase, humanhuman

TSL 5

Gene VARS, Length 885 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-223ENST00000474643 TMTC1Q8IUR5 882 aa15.31■□□□□ 0.04
VARS-223ENST00000474643 PSTKQ8IV42 348 aaKnown RBP15.31■□□□□ 0.04
VARS-223ENST00000474643 RHOT2Q8IXI1 618 aa15.31■□□□□ 0.04
VARS-223ENST00000474643 NIPA2Q8N8Q9 360 aa15.31■□□□□ 0.04
VARS-223ENST00000474643 SLC35G2Q8TBE7 412 aa15.31■□□□□ 0.04
VARS-223ENST00000474643 IFT43Q96FT9 208 aa15.31■□□□□ 0.04
VARS-223ENST00000474643 KCTD15Q96SI1 283 aaPredicted RBP15.31■□□□□ 0.04
VARS-223ENST00000474643 UCKL1Q9NWZ5 548 aa15.31■□□□□ 0.04
VARS-223ENST00000474643 UBA2Q9UBT2 640 aaPredicted RBP15.31■□□□□ 0.04
VARS-223ENST00000474643 ITM2BQ9Y287 266 aa15.31■□□□□ 0.04
VARS-223ENST00000474643 GPSM3Q9Y4H4 160 aa15.31■□□□□ 0.04
VARS-223ENST00000474643 EIF4E1BA6NMX2 242 aaKnown RBP15.3■□□□□ 0.04
VARS-223ENST00000474643 H3BRJ5 948 aa15.3■□□□□ 0.04
VARS-223ENST00000474643 RNF103O00237 685 aa15.3■□□□□ 0.04
VARS-223ENST00000474643 TRIM38O00635 465 aa15.3■□□□□ 0.04
VARS-223ENST00000474643 TM7SF2O76062 418 aa15.3■□□□□ 0.04
VARS-223ENST00000474643 PROSCO94903 275 aa15.3■□□□□ 0.04
VARS-223ENST00000474643 ACP1P24666 158 aa15.3■□□□□ 0.04
VARS-223ENST00000474643 ABL2P42684 1182 aa15.3■□□□□ 0.04
VARS-223ENST00000474643 NOP2P46087 812 aaKnown RBP15.3■□□□□ 0.04
VARS-223ENST00000474643 ZNF135P52742 658 aaPredicted RBP15.3■□□□□ 0.04
VARS-223ENST00000474643 CCDC173Q0VFZ6 552 aa15.3■□□□□ 0.04
VARS-223ENST00000474643 GOLGA4Q13439 2230 aaKnown RBP15.3■□□□□ 0.04
VARS-223ENST00000474643 PTK2BQ14289 1009 aa15.3■□□□□ 0.04
VARS-223ENST00000474643 LRRC73Q5JTD7 316 aa15.3■□□□□ 0.04
VARS-223ENST00000474643 KDM7AQ6ZMT4 941 aa15.3■□□□□ 0.04
VARS-223ENST00000474643 SLC22A18ASQ8N1D0 253 aa15.3■□□□□ 0.04
VARS-223ENST00000474643 SLC25A45Q8N413 288 aa15.3■□□□□ 0.04
VARS-223ENST00000474643 CCDC112Q8NEF3 446 aa15.3■□□□□ 0.04
VARS-223ENST00000474643 DENND6BQ8NEG7 585 aa15.3■□□□□ 0.04
VARS-223ENST00000474643 TSC1Q92574 1164 aa15.3■□□□□ 0.04
VARS-223ENST00000474643 HMCESQ96FZ2 354 aa15.3■□□□□ 0.04
VARS-223ENST00000474643 EXOC2Q96KP1 924 aa15.3■□□□□ 0.04
VARS-223ENST00000474643 WRAP53Q9BUR4 548 aaKnown RBP15.3■□□□□ 0.04
VARS-223ENST00000474643 STAU2Q9NUL3 570 aaKnown RBP eCLIP15.3■□□□□ 0.04
VARS-223ENST00000474643 NLGN3Q9NZ94 848 aa15.3■□□□□ 0.04
VARS-223ENST00000474643 NCKIPSDQ9NZQ3 722 aa15.3■□□□□ 0.04
VARS-223ENST00000474643 DKK4Q9UBT3 224 aa15.3■□□□□ 0.04
VARS-223ENST00000474643 INTUQ9ULD6 942 aa15.3■□□□□ 0.04
VARS-223ENST00000474643 CHD5Q8TDI0 1954 aa15.29■□□□□ 0.04
VARS-223ENST00000474643 PLXNB3Q9ULL4 1909 aa15.29■□□□□ 0.04
VARS-223ENST00000474643 POM121BA6NF01 834 aa15.29■□□□□ 0.04
VARS-223ENST00000474643 RRP8O43159 456 aaKnown RBP15.29■□□□□ 0.04
VARS-223ENST00000474643 RARAP10276 462 aa15.29■□□□□ 0.04
VARS-223ENST00000474643 JUNDP17535 347 aa15.29■□□□□ 0.04
VARS-223ENST00000474643 IL1R2P27930 398 aa15.29■□□□□ 0.04
VARS-223ENST00000474643 ELP6Q0PNE2 266 aa15.29■□□□□ 0.04
VARS-223ENST00000474643 GRM3Q14832 879 aa15.29■□□□□ 0.04
VARS-223ENST00000474643 PROX2Q3B8N5 592 aa15.29■□□□□ 0.04
VARS-223ENST00000474643 ERAP2Q6P179 960 aa15.29■□□□□ 0.04
VARS-223ENST00000474643 RFX8Q6ZV50 586 aa15.29■□□□□ 0.04
VARS-223ENST00000474643 KANSL1Q7Z3B3 1105 aa15.29■□□□□ 0.04
VARS-223ENST00000474643 ZNF548Q8NEK5 533 aaPredicted RBP15.29■□□□□ 0.04
VARS-223ENST00000474643 LMX1AQ8TE12 382 aa15.29■□□□□ 0.04
VARS-223ENST00000474643 BTN2A2Q8WVV5 523 aa15.29■□□□□ 0.04
VARS-223ENST00000474643 RFFLQ8WZ73 363 aa15.29■□□□□ 0.04
VARS-223ENST00000474643 GLMNQ92990 594 aa15.29■□□□□ 0.04
VARS-223ENST00000474643 IL12RB2Q99665 862 aa15.29■□□□□ 0.04
VARS-223ENST00000474643 SLC13A1Q9BZW2 595 aa15.29■□□□□ 0.04
VARS-223ENST00000474643 SP110Q9HB58 689 aa15.29■□□□□ 0.04
VARS-223ENST00000474643 GGT7Q9UJ14 662 aa15.29■□□□□ 0.04
VARS-223ENST00000474643 DOLKQ9UPQ8 538 aa15.29■□□□□ 0.04
VARS-223ENST00000474643 NEU3Q9UQ49 428 aa15.29■□□□□ 0.04
VARS-223ENST00000474643 SPTY2D1-AS1A0A0U1RR47 76 aa15.28■□□□□ 0.04
VARS-223ENST00000474643 ARHGAP42A6NI28 874 aa15.28■□□□□ 0.04
VARS-223ENST00000474643 SOWAHDA6NJG2 315 aa15.28■□□□□ 0.04
VARS-223ENST00000474643 WASH4PA8MWX3 477 aa15.28■□□□□ 0.04
VARS-223ENST00000474643 SCAMP1O15126 338 aa15.28■□□□□ 0.04
VARS-223ENST00000474643 RAD51BO15315 384 aa15.28■□□□□ 0.04
VARS-223ENST00000474643 NRDCO43847 1150 aa15.28■□□□□ 0.04
VARS-223ENST00000474643 MMP20O60882 483 aa15.28■□□□□ 0.04
VARS-223ENST00000474643 NEBLO76041 1014 aa15.28■□□□□ 0.04
VARS-223ENST00000474643 CAPNS1P04632 268 aa15.28■□□□□ 0.04
VARS-223ENST00000474643 TCF4P15884 667 aa15.28■□□□□ 0.04
VARS-223ENST00000474643 ERCC2P18074 760 aa15.28■□□□□ 0.04
VARS-223ENST00000474643 ABCG1P45844 678 aa15.28■□□□□ 0.04
VARS-223ENST00000474643 CDH6P55285 790 aa15.28■□□□□ 0.04
VARS-223ENST00000474643 CAMK2BQ13554 666 aa15.28■□□□□ 0.04
VARS-223ENST00000474643 INO80DQ53TQ3 878 aaPredicted RBP15.28■□□□□ 0.04
VARS-223ENST00000474643 ODF2Q5BJF6 829 aa15.28■□□□□ 0.04
VARS-223ENST00000474643 ARTNQ5T4W7 220 aa15.28■□□□□ 0.04
VARS-223ENST00000474643 CYP4V2Q6ZWL3 525 aaPredicted RBP15.28■□□□□ 0.04
VARS-223ENST00000474643 NETO2Q8NC67 525 aa15.28■□□□□ 0.04
VARS-223ENST00000474643 TEKT4Q8WW24 435 aa15.28■□□□□ 0.04
VARS-223ENST00000474643 CELF6Q96J87 481 aaKnown RBP15.28■□□□□ 0.04
VARS-223ENST00000474643 BMFQ96LC9 184 aa15.28■□□□□ 0.04
VARS-223ENST00000474643 APOLD1Q96LR9 279 aa15.28■□□□□ 0.04
VARS-223ENST00000474643 LENG8Q96PV6 779 aaPredicted RBP15.28■□□□□ 0.04
VARS-223ENST00000474643 DEPDC7Q96QD5 511 aa15.28■□□□□ 0.04
VARS-223ENST00000474643 BAG1Q99933 345 aaPredicted RBP15.28■□□□□ 0.04
VARS-223ENST00000474643 CINPQ9BW66 212 aaPredicted RBP15.28■□□□□ 0.04
VARS-223ENST00000474643 USP29Q9HBJ7 922 aa15.28■□□□□ 0.04
VARS-223ENST00000474643 APOBEC3BQ9UH17 382 aaKnown RBP15.28■□□□□ 0.04
VARS-223ENST00000474643 PCDHA13Q9Y5I0 950 aa15.28■□□□□ 0.04
VARS-223ENST00000474643 TRPM6Q9BX84 2022 aa15.27■□□□□ 0.04
VARS-223ENST00000474643 DFFAO00273 331 aa15.27■□□□□ 0.04
VARS-223ENST00000474643 AQP9O43315 295 aa15.27■□□□□ 0.04
VARS-223ENST00000474643 NDUFA10O95299 355 aa15.27■□□□□ 0.04
VARS-223ENST00000474643 CD160O95971 181 aa15.27■□□□□ 0.04
VARS-223ENST00000474643 CSF2P04141 144 aa15.27■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms