RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 USP28Q96RU2 1077 aa5.39□□□□□ -1.55
PTPN4-209ENST00000469511 IL12RB2Q99665 862 aa5.39□□□□□ -1.55
PTPN4-209ENST00000469511 SLC17A9Q9BYT1 436 aa5.39□□□□□ -1.55
PTPN4-209ENST00000469511 CPEB1Q9BZB8 566 aaKnown RBP5.39□□□□□ -1.55
PTPN4-209ENST00000469511 KCTD10Q9H3F6 313 aa5.39□□□□□ -1.55
PTPN4-209ENST00000469511 SEMA6CQ9H3T2 930 aa5.39□□□□□ -1.55
PTPN4-209ENST00000469511 LRRN3Q9H3W5 708 aa5.39□□□□□ -1.55
PTPN4-209ENST00000469511 CYP3A43Q9HB55 503 aa5.39□□□□□ -1.55
PTPN4-209ENST00000469511 LRRC4Q9HBW1 653 aa5.39□□□□□ -1.55
PTPN4-209ENST00000469511 ABCC13Q9NSE7 274 aa5.39□□□□□ -1.55
PTPN4-209ENST00000469511 OLA1Q9NTK5 396 aaKnown RBP5.39□□□□□ -1.55
PTPN4-209ENST00000469511 ANAPC2Q9UJX6 822 aa5.39□□□□□ -1.55
PTPN4-209ENST00000469511 ITM2BQ9Y287 266 aa5.39□□□□□ -1.55
PTPN4-209ENST00000469511 EPB41L3Q9Y2J2 1087 aaPredicted RBP5.39□□□□□ -1.55
PTPN4-209ENST00000469511 OR51B4Q9Y5P0 310 aa5.39□□□□□ -1.55
PTPN4-209ENST00000469511 ACTL7AQ9Y615 435 aa5.39□□□□□ -1.55
PTPN4-209ENST00000469511 HS3ST3A1Q9Y663 406 aa5.39□□□□□ -1.55
PTPN4-209ENST00000469511 CSNK1G3Q9Y6M4 447 aa5.39□□□□□ -1.55
PTPN4-209ENST00000469511 NAV3Q8IVL0 2385 aa5.39□□□□□ -1.55
PTPN4-209ENST00000469511 CROCCQ5TZA2 2017 aa5.39□□□□□ -1.55
PTPN4-209ENST00000469511 IGLON5A6NGN9 336 aa5.38□□□□□ -1.55
PTPN4-209ENST00000469511 A6NNZ2 444 aa5.38□□□□□ -1.55
PTPN4-209ENST00000469511 RNF225M0QZC1 329 aaPredicted RBP5.38□□□□□ -1.55
PTPN4-209ENST00000469511 TPP1O14773 563 aa5.38□□□□□ -1.55
PTPN4-209ENST00000469511 KLRC4O43908 158 aa5.38□□□□□ -1.55
PTPN4-209ENST00000469511 ZNF821O75541 412 aaPredicted RBP5.38□□□□□ -1.55
PTPN4-209ENST00000469511 AGFG2O95081 481 aa5.38□□□□□ -1.55
PTPN4-209ENST00000469511 BMP15O95972 392 aa5.38□□□□□ -1.55
PTPN4-209ENST00000469511 LTFP02788 710 aa5.38□□□□□ -1.55
PTPN4-209ENST00000469511 CELA3AP09093 270 aa5.38□□□□□ -1.55
PTPN4-209ENST00000469511 JMJD7P0C870 316 aa5.38□□□□□ -1.55
PTPN4-209ENST00000469511 SRCP12931 536 aa5.38□□□□□ -1.55
PTPN4-209ENST00000469511 NID1P14543 1247 aa5.38□□□□□ -1.55
PTPN4-209ENST00000469511 ZNF18P17022 549 aa5.38□□□□□ -1.55
PTPN4-209ENST00000469511 AMPD1P23109 780 aa5.38□□□□□ -1.55
PTPN4-209ENST00000469511 OAS2P29728 719 aaKnown RBP5.38□□□□□ -1.55
PTPN4-209ENST00000469511 GKP32189 559 aa5.38□□□□□ -1.55
PTPN4-209ENST00000469511 CCKBRP32239 447 aa5.38□□□□□ -1.55
PTPN4-209ENST00000469511 CHRNA3P32297 505 aa5.38□□□□□ -1.55
PTPN4-209ENST00000469511 NUDT1P36639 197 aa5.38□□□□□ -1.55
PTPN4-209ENST00000469511 SLC11A2P49281 568 aa5.38□□□□□ -1.55
PTPN4-209ENST00000469511 VAMP7P51809 220 aa5.38□□□□□ -1.55
PTPN4-209ENST00000469511 PLK1P53350 603 aa5.38□□□□□ -1.55
PTPN4-209ENST00000469511 AP3M2P53677 418 aa5.38□□□□□ -1.55
PTPN4-209ENST00000469511 PFN3P60673 137 aa5.38□□□□□ -1.55
PTPN4-209ENST00000469511 NUGGCQ68CJ6 796 aa5.38□□□□□ -1.55
PTPN4-209ENST00000469511 CAPRIN2Q6IMN6 1127 aaKnown RBP5.38□□□□□ -1.55
PTPN4-209ENST00000469511 LINGO4Q6UY18 593 aa5.38□□□□□ -1.55
PTPN4-209ENST00000469511 KYAT3Q6YP21 454 aaKnown RBP5.38□□□□□ -1.55
PTPN4-209ENST00000469511 C8orf86Q6ZUL3 223 aa5.38□□□□□ -1.55
PTPN4-209ENST00000469511 STXBP4Q6ZWJ1 553 aa5.38□□□□□ -1.55
PTPN4-209ENST00000469511 UNC13DQ70J99 1090 aa5.38□□□□□ -1.55
PTPN4-209ENST00000469511 DSG4Q86SJ6 1040 aa5.38□□□□□ -1.55
PTPN4-209ENST00000469511 TAC4Q86UU9 113 aa5.38□□□□□ -1.55
PTPN4-209ENST00000469511 PARGQ86W56 976 aa5.38□□□□□ -1.55
PTPN4-209ENST00000469511 CHSY1Q86X52 802 aa5.38□□□□□ -1.55
PTPN4-209ENST00000469511 WFDC8Q8IUA0 241 aa5.38□□□□□ -1.55
PTPN4-209ENST00000469511 UNC45BQ8IWX7 931 aa5.38□□□□□ -1.55
PTPN4-209ENST00000469511 PHACTR4Q8IZ21 702 aa5.38□□□□□ -1.55
PTPN4-209ENST00000469511 SH2D3CQ8N5H7 860 aa5.38□□□□□ -1.55
PTPN4-209ENST00000469511 RCBTB1Q8NDN9 531 aa5.38□□□□□ -1.55
PTPN4-209ENST00000469511 PCDH19Q8TAB3 1148 aa5.38□□□□□ -1.55
PTPN4-209ENST00000469511 GRIN3AQ8TCU5 1115 aa5.38□□□□□ -1.55
PTPN4-209ENST00000469511 TSACCQ96A04 125 aaPredicted RBP5.38□□□□□ -1.55
PTPN4-209ENST00000469511 AZIN2Q96A70 460 aa5.38□□□□□ -1.55
PTPN4-209ENST00000469511 VOPP1Q96AW1 172 aa5.38□□□□□ -1.55
PTPN4-209ENST00000469511 TMEM74Q96NL1 305 aa5.38□□□□□ -1.55
PTPN4-209ENST00000469511 IPO9Q96P70 1041 aaKnown RBP5.38□□□□□ -1.55
PTPN4-209ENST00000469511 PSMB7Q99436 277 aa5.38□□□□□ -1.55
PTPN4-209ENST00000469511 PRMT1Q99873 361 aaKnown RBP5.38□□□□□ -1.55
PTPN4-209ENST00000469511 C7orf25Q9BPX7 421 aa5.38□□□□□ -1.55
PTPN4-209ENST00000469511 TRIM56Q9BRZ2 755 aaKnown RBP5.38□□□□□ -1.55
PTPN4-209ENST00000469511 MIS12Q9H081 205 aa5.38□□□□□ -1.55
PTPN4-209ENST00000469511 TNKS2Q9H2K2 1166 aa5.38□□□□□ -1.55
PTPN4-209ENST00000469511 ADNPQ9H2P0 1102 aa5.38□□□□□ -1.55
PTPN4-209ENST00000469511 TNMDQ9H2S6 317 aa5.38□□□□□ -1.55
PTPN4-209ENST00000469511 MBNL1Q9NR56 388 aaKnown RBP5.38□□□□□ -1.55
PTPN4-209ENST00000469511 ENAMQ9NRM1 1142 aa5.38□□□□□ -1.55
PTPN4-209ENST00000469511 APOBEC3BQ9UH17 382 aaKnown RBP5.38□□□□□ -1.55
PTPN4-209ENST00000469511 GPN3Q9UHW5 284 aaPredicted RBP5.38□□□□□ -1.55
PTPN4-209ENST00000469511 TPX2Q9ULW0 747 aaKnown RBP5.38□□□□□ -1.55
PTPN4-209ENST00000469511 TP53TG5Q9Y2B4 290 aa5.38□□□□□ -1.55
PTPN4-209ENST00000469511 RNF215Q9Y6U7 377 aa5.38□□□□□ -1.55
PTPN4-209ENST00000469511 VPS37CA5D8V6 355 aaPredicted RBP5.37□□□□□ -1.55
PTPN4-209ENST00000469511 PRR19A6NJB7 356 aa5.37□□□□□ -1.55
PTPN4-209ENST00000469511 C1QTNF3-AMACRE9PGA6 284 aa5.37□□□□□ -1.55
PTPN4-209ENST00000469511 LMO7DNF2Z398 122 aa5.37□□□□□ -1.55
PTPN4-209ENST00000469511 O00370 1275 aa5.37□□□□□ -1.55
PTPN4-209ENST00000469511 IRAK2O43187 625 aa5.37□□□□□ -1.55
PTPN4-209ENST00000469511 B4GAT1O43505 415 aa5.37□□□□□ -1.55
PTPN4-209ENST00000469511 WIPF1O43516 503 aa5.37□□□□□ -1.55
PTPN4-209ENST00000469511 PAGE1O75459 146 aa5.37□□□□□ -1.55
PTPN4-209ENST00000469511 LEFTY1O75610 366 aa5.37□□□□□ -1.55
PTPN4-209ENST00000469511 CNTN5O94779 1100 aa5.37□□□□□ -1.55
PTPN4-209ENST00000469511 MOCS3O95396 460 aa5.37□□□□□ -1.55
PTPN4-209ENST00000469511 NR3C1P04150 777 aa5.37□□□□□ -1.55
PTPN4-209ENST00000469511 PRKCGP05129 697 aa5.37□□□□□ -1.55
PTPN4-209ENST00000469511 ANXA6P08133 673 aa5.37□□□□□ -1.55
PTPN4-209ENST00000469511 PRKAR1AP10644 381 aa5.37□□□□□ -1.55
PTPN4-209ENST00000469511 FGF3P11487 239 aaPredicted RBP5.37□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms