RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 EIF2S3P41091 472 aaKnown RBP16.74■□□□□ 0.27
CCDC28B-204ENST00000469003 PRKCIP41743 596 aa16.74■□□□□ 0.27
CCDC28B-204ENST00000469003 ABCG1P45844 678 aa16.74■□□□□ 0.27
CCDC28B-204ENST00000469003 KLHL40Q2TBA0 621 aa16.74■□□□□ 0.27
CCDC28B-204ENST00000469003 ZNF571Q7Z3V5 609 aaPredicted RBP16.74■□□□□ 0.27
CCDC28B-204ENST00000469003 SNIP1Q8TAD8 396 aaKnown RBP16.74■□□□□ 0.27
CCDC28B-204ENST00000469003 IFI44Q8TCB0 444 aa16.74■□□□□ 0.27
CCDC28B-204ENST00000469003 LMX1AQ8TE12 382 aa16.74■□□□□ 0.27
CCDC28B-204ENST00000469003 FNIP1Q8TF40 1166 aa16.74■□□□□ 0.27
CCDC28B-204ENST00000469003 CELF6Q96J87 481 aaKnown RBP16.74■□□□□ 0.27
CCDC28B-204ENST00000469003 TBATAQ96M53 351 aa16.74■□□□□ 0.27
CCDC28B-204ENST00000469003 ZNF641Q96N77 438 aaPredicted RBP16.74■□□□□ 0.27
CCDC28B-204ENST00000469003 DEPDC7Q96QD5 511 aa16.74■□□□□ 0.27
CCDC28B-204ENST00000469003 PEBP4Q96S96 227 aa16.74■□□□□ 0.27
CCDC28B-204ENST00000469003 IL12RB2Q99665 862 aa16.74■□□□□ 0.27
CCDC28B-204ENST00000469003 WRAP53Q9BUR4 548 aaKnown RBP16.74■□□□□ 0.27
CCDC28B-204ENST00000469003 SLC39A8Q9C0K1 460 aa16.74■□□□□ 0.27
CCDC28B-204ENST00000469003 SUV39H2Q9H5I1 410 aa16.74■□□□□ 0.27
CCDC28B-204ENST00000469003 MBNL1Q9NR56 388 aaKnown RBP16.74■□□□□ 0.27
CCDC28B-204ENST00000469003 APOBEC3BQ9UH17 382 aaKnown RBP16.74■□□□□ 0.27
CCDC28B-204ENST00000469003 PCSK1NQ9UHG2 260 aa16.74■□□□□ 0.27
CCDC28B-204ENST00000469003 LRRK1Q38SD2 2015 aa16.74■□□□□ 0.27
CCDC28B-204ENST00000469003 BRINP1O60477 761 aa16.73■□□□□ 0.27
CCDC28B-204ENST00000469003 FTLP02792 175 aaPredicted RBP16.73■□□□□ 0.27
CCDC28B-204ENST00000469003 CSNK1DP48730 415 aa16.73■□□□□ 0.27
CCDC28B-204ENST00000469003 PAPOLAP51003 745 aaKnown RBP16.73■□□□□ 0.27
CCDC28B-204ENST00000469003 UGP2Q16851 508 aa16.73■□□□□ 0.27
CCDC28B-204ENST00000469003 DEFB133Q30KQ1 61 aa16.73■□□□□ 0.27
CCDC28B-204ENST00000469003 AFMIDQ63HM1 303 aa16.73■□□□□ 0.27
CCDC28B-204ENST00000469003 E4F1Q66K89 784 aaPredicted RBP16.73■□□□□ 0.27
CCDC28B-204ENST00000469003 MACC1Q6ZN28 852 aa16.73■□□□□ 0.27
CCDC28B-204ENST00000469003 LRRC69Q6ZNQ3 347 aa16.73■□□□□ 0.27
CCDC28B-204ENST00000469003 RFX8Q6ZV50 586 aa16.73■□□□□ 0.27
CCDC28B-204ENST00000469003 PSTKQ8IV42 348 aaKnown RBP16.73■□□□□ 0.27
CCDC28B-204ENST00000469003 PHACTR4Q8IZ21 702 aa16.73■□□□□ 0.27
CCDC28B-204ENST00000469003 RBFAQ8N0V3 343 aa16.73■□□□□ 0.27
CCDC28B-204ENST00000469003 TUBGCP5Q96RT8 1024 aa16.73■□□□□ 0.27
CCDC28B-204ENST00000469003 KCTD15Q96SI1 283 aaPredicted RBP16.73■□□□□ 0.27
CCDC28B-204ENST00000469003 ABCG4Q9H172 646 aa16.73■□□□□ 0.27
CCDC28B-204ENST00000469003 TCEAL2Q9H3H9 227 aaPredicted RBP16.73■□□□□ 0.27
CCDC28B-204ENST00000469003 CNOT8Q9UFF9 292 aaKnown RBP16.73■□□□□ 0.27
CCDC28B-204ENST00000469003 PCDHB1Q9Y5F3 818 aa16.73■□□□□ 0.27
CCDC28B-204ENST00000469003 A0A1B0GTH6 734 aa16.72■□□□□ 0.27
CCDC28B-204ENST00000469003 DDX3XO00571 662 aaKnown RBP eCLIP16.72■□□□□ 0.276e-7■■□□□ 14.3
CCDC28B-204ENST00000469003 RRP8O43159 456 aaKnown RBP16.72■□□□□ 0.27
CCDC28B-204ENST00000469003 DAPK3O43293 454 aa16.72■□□□□ 0.27
CCDC28B-204ENST00000469003 PRPSAP2O60256 369 aa16.72■□□□□ 0.27
CCDC28B-204ENST00000469003 LZTS3O60299 673 aaPredicted RBP16.72■□□□□ 0.27
CCDC28B-204ENST00000469003 BUB1BO60566 1050 aaPredicted RBP16.72■□□□□ 0.27
CCDC28B-204ENST00000469003 ERCC2P18074 760 aa16.72■□□□□ 0.27
CCDC28B-204ENST00000469003 MIPP30301 263 aa16.72■□□□□ 0.27
CCDC28B-204ENST00000469003 ACTN2P35609 894 aa16.72■□□□□ 0.27
CCDC28B-204ENST00000469003 EIF4A3P38919 411 aaKnown RBP16.72■□□□□ 0.27
CCDC28B-204ENST00000469003 ZNF135P52742 658 aaPredicted RBP16.72■□□□□ 0.27
CCDC28B-204ENST00000469003 KLHL30Q0D2K2 578 aa16.72■□□□□ 0.27
CCDC28B-204ENST00000469003 LRRC14Q15048 493 aa16.72■□□□□ 0.27
CCDC28B-204ENST00000469003 IRF4Q15306 451 aa16.72■□□□□ 0.27
CCDC28B-204ENST00000469003 CDKN3Q16667 212 aa16.72■□□□□ 0.27
CCDC28B-204ENST00000469003 PRRT3Q5FWE3 981 aa16.72■□□□□ 0.27
CCDC28B-204ENST00000469003 ERAP2Q6P179 960 aa16.72■□□□□ 0.27
CCDC28B-204ENST00000469003 BRAT1Q6PJG6 821 aa16.72■□□□□ 0.27
CCDC28B-204ENST00000469003 CYP4V2Q6ZWL3 525 aaPredicted RBP16.72■□□□□ 0.27
CCDC28B-204ENST00000469003 SRLQ86TD4 932 aa16.72■□□□□ 0.27
CCDC28B-204ENST00000469003 ARHGAP12Q8IWW6 846 aa16.72■□□□□ 0.27
CCDC28B-204ENST00000469003 MAPK15Q8TD08 544 aa16.72■□□□□ 0.27
CCDC28B-204ENST00000469003 FGF11Q92914 225 aa16.72■□□□□ 0.27
CCDC28B-204ENST00000469003 CRELD1Q96HD1 420 aa16.72■□□□□ 0.27
CCDC28B-204ENST00000469003 BOCQ9BWV1 1114 aa16.72■□□□□ 0.27
CCDC28B-204ENST00000469003 EDEM3Q9BZQ6 932 aa16.72■□□□□ 0.27
CCDC28B-204ENST00000469003 SLC13A1Q9BZW2 595 aa16.72■□□□□ 0.27
CCDC28B-204ENST00000469003 TRIM7Q9C029 511 aa16.72■□□□□ 0.27
CCDC28B-204ENST00000469003 PCDH12Q9NPG4 1184 aa16.72■□□□□ 0.27
CCDC28B-204ENST00000469003 PNMA8BQ9ULN7 279 aaPredicted RBP16.72■□□□□ 0.27
CCDC28B-204ENST00000469003 COQ6Q9Y2Z9 468 aa16.72■□□□□ 0.27
CCDC28B-204ENST00000469003 SCINQ9Y6U3 715 aa16.72■□□□□ 0.27
CCDC28B-204ENST00000469003 MAST4O15021 2626 aa16.71■□□□□ 0.27
CCDC28B-204ENST00000469003 ANKRD36A6QL64 1941 aa16.71■□□□□ 0.27
CCDC28B-204ENST00000469003 EME2A4GXA9 379 aaPredicted RBP16.71■□□□□ 0.27
CCDC28B-204ENST00000469003 TMEM110-MUSTN1A8MSY1 372 aa16.71■□□□□ 0.27
CCDC28B-204ENST00000469003 LMO7DNF2Z398 122 aa16.71■□□□□ 0.27
CCDC28B-204ENST00000469003 CSO75390 466 aaKnown RBP16.71■□□□□ 0.27
CCDC28B-204ENST00000469003 GCATO75600 419 aa16.71■□□□□ 0.27
CCDC28B-204ENST00000469003 PALMO75781 387 aa16.71■□□□□ 0.27
CCDC28B-204ENST00000469003 C6P13671 934 aa16.71■□□□□ 0.27
CCDC28B-204ENST00000469003 ITPKBP27987 946 aa16.71■□□□□ 0.27
CCDC28B-204ENST00000469003 RGRP47804 291 aa16.71■□□□□ 0.27
CCDC28B-204ENST00000469003 HCAR3P49019 387 aa16.71■□□□□ 0.27
CCDC28B-204ENST00000469003 ZNF165P49910 485 aa16.71■□□□□ 0.27
CCDC28B-204ENST00000469003 PEX5P50542 639 aa16.71■□□□□ 0.27
CCDC28B-204ENST00000469003 ADKP55263 362 aaKnown RBP16.71■□□□□ 0.27
CCDC28B-204ENST00000469003 PPARDQ03181 441 aa16.71■□□□□ 0.27
CCDC28B-204ENST00000469003 C1orf61Q13536 156 aa16.71■□□□□ 0.27
CCDC28B-204ENST00000469003 AGERQ15109 404 aa16.71■□□□□ 0.27
CCDC28B-204ENST00000469003 NR0B2Q15466 257 aa16.71■□□□□ 0.27
CCDC28B-204ENST00000469003 WSCD2Q2TBF2 565 aa16.71■□□□□ 0.27
CCDC28B-204ENST00000469003 TBC1D25Q3MII6 688 aa16.71■□□□□ 0.27
CCDC28B-204ENST00000469003 PPP6R3Q5H9R7 873 aaPredicted RBP16.71■□□□□ 0.27
CCDC28B-204ENST00000469003 CFAP58Q5T655 872 aa16.71■□□□□ 0.27
CCDC28B-204ENST00000469003 FAXCQ5TGI0 409 aa16.71■□□□□ 0.27
CCDC28B-204ENST00000469003 GUSBP11Q6P575 273 aa16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms