RNA–Protein interactions for RNA: ENST00000466897.1

NPHP4-205, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 1,192 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-205ENST00000466897 RAB7BQ96AH8 199 aa15.32■□□□□ 0.04
NPHP4-205ENST00000466897 ARRDC3Q96B67 414 aa15.32■□□□□ 0.04
NPHP4-205ENST00000466897 LRRC45Q96CN5 670 aa15.32■□□□□ 0.04
NPHP4-205ENST00000466897 KLHL32Q96NJ5 620 aa15.32■□□□□ 0.04
NPHP4-205ENST00000466897 TRIB3Q96RU7 358 aa15.32■□□□□ 0.04
NPHP4-205ENST00000466897 MLPHQ9BV36 600 aaPredicted RBP15.32■□□□□ 0.04
NPHP4-205ENST00000466897 ITM2CQ9NQX7 267 aa15.32■□□□□ 0.04
NPHP4-205ENST00000466897 BCCIPQ9P287 314 aaKnown RBP eCLIP15.32■□□□□ 0.04
NPHP4-205ENST00000466897 PPIL1Q9Y3C6 166 aa15.32■□□□□ 0.04
NPHP4-205ENST00000466897 PCDHGC4Q9Y5F7 938 aa15.32■□□□□ 0.04
NPHP4-205ENST00000466897 SCN8AQ9UQD0 1980 aa15.31■□□□□ 0.04
NPHP4-205ENST00000466897 LOC285095A0A1B0GVY8 99 aa15.31■□□□□ 0.04
NPHP4-205ENST00000466897 C16orf96A6NNT2 1141 aa15.31■□□□□ 0.04
NPHP4-205ENST00000466897 AP2A1O95782 977 aa15.31■□□□□ 0.04
NPHP4-205ENST00000466897 PRLP01236 227 aa15.31■□□□□ 0.04
NPHP4-205ENST00000466897 NFKBIAP25963 317 aa15.31■□□□□ 0.04
NPHP4-205ENST00000466897 GRIA4P48058 902 aa15.31■□□□□ 0.04
NPHP4-205ENST00000466897 TPMTP51580 245 aa15.31■□□□□ 0.04
NPHP4-205ENST00000466897 NEK3P51956 506 aa15.31■□□□□ 0.04
NPHP4-205ENST00000466897 WNT3AP56704 352 aa15.31■□□□□ 0.04
NPHP4-205ENST00000466897 CDK16Q00536 496 aa15.31■□□□□ 0.04
NPHP4-205ENST00000466897 CDK18Q07002 472 aa15.31■□□□□ 0.04
NPHP4-205ENST00000466897 CFAP58Q5T655 872 aa15.31■□□□□ 0.04
NPHP4-205ENST00000466897 KIAA1324Q6UXG2 1013 aaKnown RBP15.31■□□□□ 0.04
NPHP4-205ENST00000466897 ERN2Q76MJ5 926 aaKnown RBP15.31■□□□□ 0.04
NPHP4-205ENST00000466897 PARS2Q7L3T8 475 aaKnown RBP15.31■□□□□ 0.04
NPHP4-205ENST00000466897 WDR5BQ86VZ2 330 aa15.31■□□□□ 0.04
NPHP4-205ENST00000466897 MRGPRX2Q96LB1 330 aa15.31■□□□□ 0.04
NPHP4-205ENST00000466897 ADGRE3Q9BY15 652 aa15.31■□□□□ 0.04
NPHP4-205ENST00000466897 SLC6A17Q9H1V8 727 aa15.31■□□□□ 0.04
NPHP4-205ENST00000466897 KDM4CQ9H3R0 1056 aa15.31■□□□□ 0.04
NPHP4-205ENST00000466897 LRRC40Q9H9A6 602 aa15.31■□□□□ 0.04
NPHP4-205ENST00000466897 ETNK1Q9HBU6 452 aa15.31■□□□□ 0.04
NPHP4-205ENST00000466897 RAB6BQ9NRW1 208 aa15.31■□□□□ 0.04
NPHP4-205ENST00000466897 PHTF1Q9UMS5 762 aa15.31■□□□□ 0.04
NPHP4-205ENST00000466897 MYLKQ15746 1914 aa15.31■□□□□ 0.04
NPHP4-205ENST00000466897 UPK3BL1B0FP48 263 aa15.3■□□□□ 0.04
NPHP4-205ENST00000466897 UPK3BL2E5RIL1 263 aa15.3■□□□□ 0.04
NPHP4-205ENST00000466897 NDC80O14777 642 aa15.3■□□□□ 0.04
NPHP4-205ENST00000466897 AXIN1O15169 862 aa15.3■□□□□ 0.04
NPHP4-205ENST00000466897 TTI1O43156 1089 aa15.3■□□□□ 0.04
NPHP4-205ENST00000466897 AP1G1O43747 822 aa15.3■□□□□ 0.04
NPHP4-205ENST00000466897 PMPCBO75439 489 aa15.3■□□□□ 0.04
NPHP4-205ENST00000466897 SUN1O94901 812 aa15.3■□□□□ 0.04
NPHP4-205ENST00000466897 NDST3O95803 873 aa15.3■□□□□ 0.04
NPHP4-205ENST00000466897 CPP00450 1065 aa15.3■□□□□ 0.04
NPHP4-205ENST00000466897 ADRB3P13945 408 aa15.3■□□□□ 0.04
NPHP4-205ENST00000466897 HLA-DPA1P20036 260 aa15.3■□□□□ 0.04
NPHP4-205ENST00000466897 TPSB2P20231 275 aa15.3■□□□□ 0.04
NPHP4-205ENST00000466897 OXTRP30559 389 aa15.3■□□□□ 0.04
NPHP4-205ENST00000466897 ADRA1AP35348 466 aa15.3■□□□□ 0.04
NPHP4-205ENST00000466897 P2RY2P41231 377 aa15.3■□□□□ 0.04
NPHP4-205ENST00000466897 METAP1P53582 386 aa15.3■□□□□ 0.04
NPHP4-205ENST00000466897 CNTN1Q12860 1018 aa15.3■□□□□ 0.04
NPHP4-205ENST00000466897 GPS1Q13098 491 aa15.3■□□□□ 0.04
NPHP4-205ENST00000466897 TPSAB1Q15661 275 aa15.3■□□□□ 0.04
NPHP4-205ENST00000466897 UGP2Q16851 508 aa15.3■□□□□ 0.04
NPHP4-205ENST00000466897 GLE1Q53GS7 698 aaKnown RBP15.3■□□□□ 0.04
NPHP4-205ENST00000466897 FAM182AQ5T1J6 154 aa15.3■□□□□ 0.04
NPHP4-205ENST00000466897 PIP5KL1Q5T9C9 394 aa15.3■□□□□ 0.04
NPHP4-205ENST00000466897 AGBL4Q5VU57 503 aa15.3■□□□□ 0.04
NPHP4-205ENST00000466897 NAPEPLDQ6IQ20 393 aa15.3■□□□□ 0.04
NPHP4-205ENST00000466897 RANBP10Q6VN20 620 aa15.3■□□□□ 0.04
NPHP4-205ENST00000466897 PRUNE1Q86TP1 453 aa15.3■□□□□ 0.04
NPHP4-205ENST00000466897 ZSWIM9Q86XI8 627 aa15.3■□□□□ 0.04
NPHP4-205ENST00000466897 NDUFAF2Q8N183 169 aa15.3■□□□□ 0.04
NPHP4-205ENST00000466897 PGBD3Q8N328 593 aa15.3■□□□□ 0.04
NPHP4-205ENST00000466897 PIH1D2Q8WWB5 315 aa15.3■□□□□ 0.04
NPHP4-205ENST00000466897 IFT43Q96FT9 208 aa15.3■□□□□ 0.04
NPHP4-205ENST00000466897 OMDQ99983 421 aa15.3■□□□□ 0.04
NPHP4-205ENST00000466897 FSD1LQ9BXM9 530 aa15.3■□□□□ 0.04
NPHP4-205ENST00000466897 ZNF106Q9H2Y7 1883 aaKnown RBP15.3■□□□□ 0.04
NPHP4-205ENST00000466897 ARNT2Q9HBZ2 717 aa15.3■□□□□ 0.04
NPHP4-205ENST00000466897 FBXL12Q9NXK8 326 aa15.3■□□□□ 0.04
NPHP4-205ENST00000466897 NCKAP1Q9Y2A7 1128 aa15.3■□□□□ 0.04
NPHP4-205ENST00000466897 PCDHB9Q9Y5E1 797 aa15.3■□□□□ 0.04
NPHP4-205ENST00000466897 PLXNA2O75051 1894 aa15.29■□□□□ 0.04
NPHP4-205ENST00000466897 A0A1W2PP55 124 aa15.29■□□□□ 0.04
NPHP4-205ENST00000466897 AREL1O15033 823 aa15.29■□□□□ 0.04
NPHP4-205ENST00000466897 RAD51CO43502 376 aa15.29■□□□□ 0.04
NPHP4-205ENST00000466897 GALR2O43603 387 aaPredicted RBP15.29■□□□□ 0.04
NPHP4-205ENST00000466897 PDHA1P08559 390 aa15.29■□□□□ 0.04
NPHP4-205ENST00000466897 TIMP2P16035 220 aa15.29■□□□□ 0.04
NPHP4-205ENST00000466897 TNNT3P45378 269 aaPredicted RBP15.29■□□□□ 0.04
NPHP4-205ENST00000466897 ELP6Q0PNE2 266 aa15.29■□□□□ 0.04
NPHP4-205ENST00000466897 C8orf74Q6P047 294 aa15.29■□□□□ 0.04
NPHP4-205ENST00000466897 FBXL19Q6PCT2 694 aa15.29■□□□□ 0.04
NPHP4-205ENST00000466897 PCGF5Q86SE9 256 aa15.29■□□□□ 0.04
NPHP4-205ENST00000466897 LINC00523Q86TU6 105 aa15.29■□□□□ 0.04
NPHP4-205ENST00000466897 LONP2Q86WA8 852 aa15.29■□□□□ 0.04
NPHP4-205ENST00000466897 HDDC3Q8N4P3 179 aa15.29■□□□□ 0.04
NPHP4-205ENST00000466897 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP15.29■□□□□ 0.04
NPHP4-205ENST00000466897 ERLEC1Q96DZ1 483 aa15.29■□□□□ 0.04
NPHP4-205ENST00000466897 MCCC1Q96RQ3 725 aaPredicted RBP15.29■□□□□ 0.04
NPHP4-205ENST00000466897 LYSMD1Q96S90 227 aa15.29■□□□□ 0.04
NPHP4-205ENST00000466897 SRPK1Q96SB4 655 aaKnown RBP15.29■□□□□ 0.04
NPHP4-205ENST00000466897 PRRX2Q99811 253 aa15.29■□□□□ 0.04
NPHP4-205ENST00000466897 CARD6Q9BX69 1037 aa15.29■□□□□ 0.04
NPHP4-205ENST00000466897 SGK2Q9HBY8 427 aa15.29■□□□□ 0.04
NPHP4-205ENST00000466897 UBP1Q9NZI7 540 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms