RNA–Protein interactions for RNA: ENST00000452047.1

CPSF4-208, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 3

Gene CPSF4, Length 687 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-208ENST00000452047 CXorf40AQ8TE69 158 aa12.6□□□□□ -0.39
CPSF4-208ENST00000452047 IQCDQ96DY2 449 aa12.6□□□□□ -0.39
CPSF4-208ENST00000452047 ZNF641Q96N77 438 aaPredicted RBP12.6□□□□□ -0.39
CPSF4-208ENST00000452047 TUBGCP5Q96RT8 1024 aa12.6□□□□□ -0.39
CPSF4-208ENST00000452047 WRAP53Q9BUR4 548 aaKnown RBP12.6□□□□□ -0.39
CPSF4-208ENST00000452047 THAP2Q9H0W7 228 aa12.6□□□□□ -0.39
CPSF4-208ENST00000452047 SUV39H2Q9H5I1 410 aa12.6□□□□□ -0.39
CPSF4-208ENST00000452047 NLGN3Q9NZ94 848 aa12.6□□□□□ -0.39
CPSF4-208ENST00000452047 RALYQ9UKM9 306 aaKnown RBP12.6□□□□□ -0.39
CPSF4-208ENST00000452047 PNMA8BQ9ULN7 279 aaPredicted RBP12.6□□□□□ -0.39
CPSF4-208ENST00000452047 U3KQA8 63 aa12.6□□□□□ -0.39
CPSF4-208ENST00000452047 COL27A1Q8IZC6 1860 aaPredicted RBP12.59□□□□□ -0.39
CPSF4-208ENST00000452047 ADAMTS20P59510 1910 aa12.59□□□□□ -0.39
CPSF4-208ENST00000452047 K7ESM1 405 aa12.59□□□□□ -0.39
CPSF4-208ENST00000452047 DFFAO00273 331 aa12.59□□□□□ -0.39
CPSF4-208ENST00000452047 MUSKO15146 869 aa12.59□□□□□ -0.39
CPSF4-208ENST00000452047 PALMO75781 387 aa12.59□□□□□ -0.39
CPSF4-208ENST00000452047 NEBLO76041 1014 aa12.59□□□□□ -0.39
CPSF4-208ENST00000452047 CYP1A2P05177 515 aa12.59□□□□□ -0.39
CPSF4-208ENST00000452047 CKMT1AP12532 417 aa12.59□□□□□ -0.39
CPSF4-208ENST00000452047 MMP12P39900 470 aa12.59□□□□□ -0.39
CPSF4-208ENST00000452047 INSM1Q01101 510 aaPredicted RBP12.59□□□□□ -0.39
CPSF4-208ENST00000452047 SLC25A11Q02978 314 aaKnown RBP12.59□□□□□ -0.39
CPSF4-208ENST00000452047 IL10RBQ08334 325 aa12.59□□□□□ -0.39
CPSF4-208ENST00000452047 CYP4F3Q08477 520 aa12.59□□□□□ -0.39
CPSF4-208ENST00000452047 ELP6Q0PNE2 266 aa12.59□□□□□ -0.39
CPSF4-208ENST00000452047 EIF2B5Q13144 721 aaKnown RBP12.59□□□□□ -0.39
CPSF4-208ENST00000452047 TARDBPQ13148 414 aaKnown RBP eCLIP12.59□□□□□ -0.39
CPSF4-208ENST00000452047 PIGHQ14442 188 aaPredicted RBP12.59□□□□□ -0.39
CPSF4-208ENST00000452047 RFTN1Q14699 578 aaPredicted RBP12.59□□□□□ -0.39
CPSF4-208ENST00000452047 ZSCAN23Q3MJ62 389 aa12.59□□□□□ -0.39
CPSF4-208ENST00000452047 BRAT1Q6PJG6 821 aa12.59□□□□□ -0.39
CPSF4-208ENST00000452047 POLNQ7Z5Q5 900 aa12.59□□□□□ -0.39
CPSF4-208ENST00000452047 VPS36Q86VN1 386 aa12.59□□□□□ -0.39
CPSF4-208ENST00000452047 CAMK1DQ8IU85 385 aa12.59□□□□□ -0.39
CPSF4-208ENST00000452047 LZTR1Q8N653 840 aa12.59□□□□□ -0.39
CPSF4-208ENST00000452047 FAM181AQ8N9Y4 354 aa12.59□□□□□ -0.39
CPSF4-208ENST00000452047 ECHDC3Q96DC8 303 aa12.59□□□□□ -0.39
CPSF4-208ENST00000452047 NSMCE3Q96MG7 304 aa12.59□□□□□ -0.39
CPSF4-208ENST00000452047 C1QTNF7Q9BXJ2 289 aa12.59□□□□□ -0.39
CPSF4-208ENST00000452047 ZWILCHQ9H900 591 aa12.59□□□□□ -0.39
CPSF4-208ENST00000452047 SP110Q9HB58 689 aa12.59□□□□□ -0.39
CPSF4-208ENST00000452047 PCDH12Q9NPG4 1184 aa12.59□□□□□ -0.39
CPSF4-208ENST00000452047 MBNL1Q9NR56 388 aaKnown RBP12.59□□□□□ -0.39
CPSF4-208ENST00000452047 STAU2Q9NUL3 570 aaKnown RBP eCLIP12.59□□□□□ -0.39
CPSF4-208ENST00000452047 ETNK2Q9NVF9 386 aa12.59□□□□□ -0.39
CPSF4-208ENST00000452047 IFNKQ9P0W0 207 aa12.59□□□□□ -0.39
CPSF4-208ENST00000452047 IPO11Q9UI26 975 aaKnown RBP12.59□□□□□ -0.39
CPSF4-208ENST00000452047 NENFQ9UMX5 172 aa12.59□□□□□ -0.39
CPSF4-208ENST00000452047 GPSM3Q9Y4H4 160 aa12.59□□□□□ -0.39
CPSF4-208ENST00000452047 SHROOM3Q8TF72 1996 aa12.58□□□□□ -0.4
CPSF4-208ENST00000452047 NEMP2A6NFY4 417 aa12.58□□□□□ -0.4
CPSF4-208ENST00000452047 GOLGA6L19H0YKK7 550 aa12.58□□□□□ -0.4
CPSF4-208ENST00000452047 H3BM21 787 aa12.58□□□□□ -0.4
CPSF4-208ENST00000452047 H3BRJ5 948 aa12.58□□□□□ -0.4
CPSF4-208ENST00000452047 RIOK3O14730 519 aaKnown RBP12.58□□□□□ -0.4
CPSF4-208ENST00000452047 PEX11BO96011 259 aa12.58□□□□□ -0.4
CPSF4-208ENST00000452047 RARAP10276 462 aa12.58□□□□□ -0.4
CPSF4-208ENST00000452047 ALPPL2P10696 532 aa12.58□□□□□ -0.4
CPSF4-208ENST00000452047 C6P13671 934 aa12.58□□□□□ -0.4
CPSF4-208ENST00000452047 JUPP14923 745 aa12.58□□□□□ -0.4
CPSF4-208ENST00000452047 JUNDP17535 347 aa12.58□□□□□ -0.4
CPSF4-208ENST00000452047 YPEL5P62699 121 aa12.58□□□□□ -0.4
CPSF4-208ENST00000452047 DAB2P98082 770 aa12.58□□□□□ -0.4
CPSF4-208ENST00000452047 NSUN2Q08J23 767 aaKnown RBP eCLIP12.58□□□□□ -0.4
CPSF4-208ENST00000452047 AGERQ15109 404 aa12.58□□□□□ -0.4
CPSF4-208ENST00000452047 IRF4Q15306 451 aa12.58□□□□□ -0.4
CPSF4-208ENST00000452047 BOLA3Q53S33 107 aa12.58□□□□□ -0.4
CPSF4-208ENST00000452047 HS1BP3Q53T59 392 aa12.58□□□□□ -0.4
CPSF4-208ENST00000452047 IGSF10Q6WRI0 2623 aa12.58□□□□□ -0.4
CPSF4-208ENST00000452047 MACC1Q6ZN28 852 aa12.58□□□□□ -0.4
CPSF4-208ENST00000452047 SRLQ86TD4 932 aa12.58□□□□□ -0.4
CPSF4-208ENST00000452047 CACTIN-AS1Q8N1I8 211 aa12.58□□□□□ -0.4
CPSF4-208ENST00000452047 CPLX3Q8WVH0 158 aa12.58□□□□□ -0.4
CPSF4-208ENST00000452047 TEKT4Q8WW24 435 aa12.58□□□□□ -0.4
CPSF4-208ENST00000452047 HSPH1Q92598 858 aa12.58□□□□□ -0.4
CPSF4-208ENST00000452047 BTBD6Q96KE9 485 aa12.58□□□□□ -0.4
CPSF4-208ENST00000452047 APOLD1Q96LR9 279 aa12.58□□□□□ -0.4
CPSF4-208ENST00000452047 CSPG4P5Q96PW8 444 aa12.58□□□□□ -0.4
CPSF4-208ENST00000452047 PSKH2Q96QS6 385 aa12.58□□□□□ -0.4
CPSF4-208ENST00000452047 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP12.58□□□□□ -0.4
CPSF4-208ENST00000452047 DUSP23Q9BVJ7 150 aa12.58□□□□□ -0.4
CPSF4-208ENST00000452047 CINPQ9BW66 212 aaPredicted RBP12.58□□□□□ -0.4
CPSF4-208ENST00000452047 ATP13A3Q9H7F0 1226 aa12.58□□□□□ -0.4
CPSF4-208ENST00000452047 ANAPC7Q9UJX3 599 aa12.58□□□□□ -0.4
CPSF4-208ENST00000452047 ATP8A1Q9Y2Q0 1164 aa12.58□□□□□ -0.4
CPSF4-208ENST00000452047 RAXQ9Y2V3 346 aa12.58□□□□□ -0.4
CPSF4-208ENST00000452047 COQ6Q9Y2Z9 468 aa12.58□□□□□ -0.4
CPSF4-208ENST00000452047 LUC7L2Q9Y383 392 aaKnown RBP12.58□□□□□ -0.4
CPSF4-208ENST00000452047 CSNK1G3Q9Y6M4 447 aa12.58□□□□□ -0.4
CPSF4-208ENST00000452047 TRAFD1O14545 582 aaPredicted RBP12.57□□□□□ -0.4
CPSF4-208ENST00000452047 TOR1BO14657 336 aa12.57□□□□□ -0.4
CPSF4-208ENST00000452047 AQP9O43315 295 aa12.57□□□□□ -0.4
CPSF4-208ENST00000452047 MYF5P13349 255 aa12.57□□□□□ -0.4
CPSF4-208ENST00000452047 XPAP23025 273 aaPredicted RBP12.57□□□□□ -0.4
CPSF4-208ENST00000452047 AMPD1P23109 780 aa12.57□□□□□ -0.4
CPSF4-208ENST00000452047 SERPINA4P29622 427 aa12.57□□□□□ -0.4
CPSF4-208ENST00000452047 HNRNPH3P31942 346 aaKnown RBP12.57□□□□□ -0.4
CPSF4-208ENST00000452047 ARL4AP40617 200 aa12.57□□□□□ -0.4
CPSF4-208ENST00000452047 THOP1P52888 689 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms