RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 FZD10Q9ULW2 581 aa7.16□□□□□ -1.26
VPS41-208ENST00000448833 DOLKQ9UPQ8 538 aa7.16□□□□□ -1.26
VPS41-208ENST00000448833 CA5BQ9Y2D0 317 aa7.16□□□□□ -1.26
VPS41-208ENST00000448833 ATRXP46100 2492 aa7.16□□□□□ -1.26
VPS41-208ENST00000448833 IGSF10Q6WRI0 2623 aa7.15□□□□□ -1.26
VPS41-208ENST00000448833 RP1P56715 2156 aa7.15□□□□□ -1.26
VPS41-208ENST00000448833 ASXL3Q9C0F0 2248 aa7.15□□□□□ -1.26
VPS41-208ENST00000448833 TEX51A0A1B0GUA7 166 aa7.15□□□□□ -1.26
VPS41-208ENST00000448833 EME2A4GXA9 379 aaPredicted RBP7.15□□□□□ -1.26
VPS41-208ENST00000448833 RASA4BC9J798 803 aa7.15□□□□□ -1.26
VPS41-208ENST00000448833 PDE2AO00408 941 aaPredicted RBP7.15□□□□□ -1.26
VPS41-208ENST00000448833 ZW10O43264 779 aa7.15□□□□□ -1.26
VPS41-208ENST00000448833 CCP110O43303 1012 aa7.15□□□□□ -1.26
VPS41-208ENST00000448833 RASA4O43374 803 aa7.15□□□□□ -1.26
VPS41-208ENST00000448833 BRINP1O60477 761 aa7.15□□□□□ -1.26
VPS41-208ENST00000448833 USP12O75317 370 aa7.15□□□□□ -1.26
VPS41-208ENST00000448833 GIMD1P0DJR0 217 aa7.15□□□□□ -1.26
VPS41-208ENST00000448833 GZMAP12544 262 aa7.15□□□□□ -1.26
VPS41-208ENST00000448833 ATP1A3P13637 1013 aa7.15□□□□□ -1.26
VPS41-208ENST00000448833 KELP23276 732 aa7.15□□□□□ -1.26
VPS41-208ENST00000448833 RBMS1P29558 406 aaKnown RBP7.15□□□□□ -1.26
VPS41-208ENST00000448833 SERPINA4P29622 427 aa7.15□□□□□ -1.26
VPS41-208ENST00000448833 EIF4A3P38919 411 aaKnown RBP7.15□□□□□ -1.26
VPS41-208ENST00000448833 HCAR3P49019 387 aa7.15□□□□□ -1.26
VPS41-208ENST00000448833 TPI1P60174 286 aa7.15□□□□□ -1.26
VPS41-208ENST00000448833 PEX6Q13608 980 aa7.15□□□□□ -1.26
VPS41-208ENST00000448833 FGL2Q14314 439 aa7.15□□□□□ -1.26
VPS41-208ENST00000448833 AGERQ15109 404 aa7.15□□□□□ -1.26
VPS41-208ENST00000448833 UGP2Q16851 508 aa7.15□□□□□ -1.26
VPS41-208ENST00000448833 TMEM52BQ4KMG9 183 aa7.15□□□□□ -1.26
VPS41-208ENST00000448833 ZNF542PQ5EBM4 170 aa7.15□□□□□ -1.26
VPS41-208ENST00000448833 PRRT3Q5FWE3 981 aa7.15□□□□□ -1.26
VPS41-208ENST00000448833 CCDC183Q5T5S1 534 aa7.15□□□□□ -1.26
VPS41-208ENST00000448833 ERMARDQ5T6L9 678 aa7.15□□□□□ -1.26
VPS41-208ENST00000448833 MACC1Q6ZN28 852 aa7.15□□□□□ -1.26
VPS41-208ENST00000448833 RBM44Q6ZP01 1051 aaKnown RBP7.15□□□□□ -1.26
VPS41-208ENST00000448833 MON1BQ7L1V2 547 aa7.15□□□□□ -1.26
VPS41-208ENST00000448833 GPR155Q7Z3F1 870 aa7.15□□□□□ -1.26
VPS41-208ENST00000448833 PHLDB2Q86SQ0 1253 aa7.15□□□□□ -1.26
VPS41-208ENST00000448833 VPS36Q86VN1 386 aa7.15□□□□□ -1.26
VPS41-208ENST00000448833 GKN2Q86XP6 184 aa7.15□□□□□ -1.26
VPS41-208ENST00000448833 MARCH9Q86YJ5 346 aa7.15□□□□□ -1.26
VPS41-208ENST00000448833 MCOLN2Q8IZK6 566 aa7.15□□□□□ -1.26
VPS41-208ENST00000448833 BBS5Q8N3I7 341 aa7.15□□□□□ -1.26
VPS41-208ENST00000448833 ARL14Q8N4G2 192 aa7.15□□□□□ -1.26
VPS41-208ENST00000448833 OR6K2Q8NGY2 324 aa7.15□□□□□ -1.26
VPS41-208ENST00000448833 IFI44Q8TCB0 444 aa7.15□□□□□ -1.26
VPS41-208ENST00000448833 LMX1AQ8TE12 382 aa7.15□□□□□ -1.26
VPS41-208ENST00000448833 FNIP1Q8TF40 1166 aa7.15□□□□□ -1.26
VPS41-208ENST00000448833 HMCESQ96FZ2 354 aa7.15□□□□□ -1.26
VPS41-208ENST00000448833 MCEEQ96PE7 176 aa7.15□□□□□ -1.26
VPS41-208ENST00000448833 PCDHB18PQ96TA0 734 aa7.15□□□□□ -1.26
VPS41-208ENST00000448833 LGMNQ99538 433 aa7.15□□□□□ -1.26
VPS41-208ENST00000448833 BPIFA3Q9BQP9 254 aa7.15□□□□□ -1.26
VPS41-208ENST00000448833 BOCQ9BWV1 1114 aa7.15□□□□□ -1.26
VPS41-208ENST00000448833 EDEM3Q9BZQ6 932 aa7.15□□□□□ -1.26
VPS41-208ENST00000448833 NDFIP2Q9NV92 336 aa7.15□□□□□ -1.26
VPS41-208ENST00000448833 HAUS2Q9NVX0 235 aa7.15□□□□□ -1.26
VPS41-208ENST00000448833 APOBEC3BQ9UH17 382 aaKnown RBP7.15□□□□□ -1.26
VPS41-208ENST00000448833 BZW2Q9Y6E2 419 aaKnown RBP7.15□□□□□ -1.26
VPS41-208ENST00000448833 SCINQ9Y6U3 715 aa7.15□□□□□ -1.26
VPS41-208ENST00000448833 CELSR3Q9NYQ7 3312 aa7.15□□□□□ -1.27
VPS41-208ENST00000448833 ZFYVE26Q68DK2 2539 aa7.15□□□□□ -1.27
VPS41-208ENST00000448833 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP7.14□□□□□ -1.27
VPS41-208ENST00000448833 TCRBV5S1A1TA0A578 114 aa7.14□□□□□ -1.27
VPS41-208ENST00000448833 CPED1A4D0V7 1026 aa7.14□□□□□ -1.27
VPS41-208ENST00000448833 EEF2KO00418 725 aaKnown RBP7.14□□□□□ -1.27
VPS41-208ENST00000448833 EPHB6O15197 1021 aa7.14□□□□□ -1.27
VPS41-208ENST00000448833 RAD51BO15315 384 aa7.14□□□□□ -1.27
VPS41-208ENST00000448833 PRPSAP2O60256 369 aa7.14□□□□□ -1.27
VPS41-208ENST00000448833 PRAMEF11O60813 436 aa7.14□□□□□ -1.27
VPS41-208ENST00000448833 MMP20O60882 483 aa7.14□□□□□ -1.27
VPS41-208ENST00000448833 CSO75390 466 aaKnown RBP7.14□□□□□ -1.27
VPS41-208ENST00000448833 PALMO75781 387 aa7.14□□□□□ -1.27
VPS41-208ENST00000448833 RASGRP1O95267 797 aa7.14□□□□□ -1.27
VPS41-208ENST00000448833 MYBL1P10243 752 aa7.14□□□□□ -1.27
VPS41-208ENST00000448833 KRT10P13645 584 aa7.14□□□□□ -1.27
VPS41-208ENST00000448833 TIMP2P16035 220 aa7.14□□□□□ -1.27
VPS41-208ENST00000448833 PSMA2P25787 234 aa7.14□□□□□ -1.27
VPS41-208ENST00000448833 HSPA9P38646 679 aaKnown RBP7.14□□□□□ -1.27
VPS41-208ENST00000448833 ABL2P42684 1182 aa7.14□□□□□ -1.27
VPS41-208ENST00000448833 KLK7P49862 253 aa7.14□□□□□ -1.27
VPS41-208ENST00000448833 HK3P52790 923 aa7.14□□□□□ -1.27
VPS41-208ENST00000448833 ADKP55263 362 aaKnown RBP7.14□□□□□ -1.27
VPS41-208ENST00000448833 TMPRSS3P57727 454 aa7.14□□□□□ -1.27
VPS41-208ENST00000448833 RPL7AP62424 266 aaKnown RBP7.14□□□□□ -1.27
VPS41-208ENST00000448833 TPM4P67936 248 aa7.14□□□□□ -1.27
VPS41-208ENST00000448833 GABREP78334 506 aa7.14□□□□□ -1.27
VPS41-208ENST00000448833 BCL2L1Q07817 233 aa7.14□□□□□ -1.27
VPS41-208ENST00000448833 C19orf57Q0VDD7 668 aa7.14□□□□□ -1.27
VPS41-208ENST00000448833 EIF3IQ13347 325 aaKnown RBP7.14□□□□□ -1.27
VPS41-208ENST00000448833 CDKN3Q16667 212 aa7.14□□□□□ -1.27
VPS41-208ENST00000448833 ISXQ2M1V0 245 aa7.14□□□□□ -1.27
VPS41-208ENST00000448833 TSR1Q2NL82 804 aaKnown RBP7.14□□□□□ -1.27
VPS41-208ENST00000448833 KLHL40Q2TBA0 621 aa7.14□□□□□ -1.27
VPS41-208ENST00000448833 SOWAHCQ53LP3 525 aaPredicted RBP7.14□□□□□ -1.27
VPS41-208ENST00000448833 BOLA3Q53S33 107 aa7.14□□□□□ -1.27
VPS41-208ENST00000448833 C6orf132Q5T0Z8 1188 aa7.14□□□□□ -1.27
VPS41-208ENST00000448833 ATXN7L2Q5T6C5 722 aaPredicted RBP7.14□□□□□ -1.27
VPS41-208ENST00000448833 EFL1Q7Z2Z2 1120 aaKnown RBP7.14□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms