RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 PABPN1LA6NDY0 278 aaKnown RBP4.39□□□□□ -1.71
VPS29-202ENST00000447578 NPIPB15A6NHN6 443 aaPredicted RBP4.39□□□□□ -1.71
VPS29-202ENST00000447578 SYN3O14994 580 aa4.39□□□□□ -1.71
VPS29-202ENST00000447578 VILLO15195 856 aa4.39□□□□□ -1.71
VPS29-202ENST00000447578 METTL18O95568 372 aa4.39□□□□□ -1.71
VPS29-202ENST00000447578 URODP06132 367 aa4.39□□□□□ -1.71
VPS29-202ENST00000447578 CSH1P0DML2 217 aa4.39□□□□□ -1.71
VPS29-202ENST00000447578 CSH2P0DML3 217 aa4.39□□□□□ -1.71
VPS29-202ENST00000447578 LYL1P12980 280 aa4.39□□□□□ -1.71
VPS29-202ENST00000447578 COX7A2P14406 83 aa4.39□□□□□ -1.71
VPS29-202ENST00000447578 HNF1BP35680 557 aa4.39□□□□□ -1.71
VPS29-202ENST00000447578 RPS6KA3P51812 740 aa4.39□□□□□ -1.71
VPS29-202ENST00000447578 MVDP53602 400 aa4.39□□□□□ -1.71
VPS29-202ENST00000447578 COPB1P53618 953 aaKnown RBP4.39□□□□□ -1.71
VPS29-202ENST00000447578 TXNL4AP83876 142 aaKnown RBP4.39□□□□□ -1.71
VPS29-202ENST00000447578 NEXNQ0ZGT2 675 aa4.39□□□□□ -1.71
VPS29-202ENST00000447578 ACVR2BQ13705 512 aa4.39□□□□□ -1.71
VPS29-202ENST00000447578 SH2D4BQ5SQS7 431 aa4.39□□□□□ -1.71
VPS29-202ENST00000447578 UBAP2Q5T6F2 1119 aaKnown RBP4.39□□□□□ -1.71
VPS29-202ENST00000447578 DENND2CQ68D51 928 aa4.39□□□□□ -1.71
VPS29-202ENST00000447578 KIAA1161Q6NSJ0 714 aa4.39□□□□□ -1.71
VPS29-202ENST00000447578 TMEM88Q6PEY1 159 aa4.39□□□□□ -1.71
VPS29-202ENST00000447578 PTCHD4Q6ZW05 846 aa4.39□□□□□ -1.71
VPS29-202ENST00000447578 ITPRIPQ8IWB1 547 aa4.39□□□□□ -1.71
VPS29-202ENST00000447578 TAGAPQ8N103 731 aa4.39□□□□□ -1.71
VPS29-202ENST00000447578 GADD45GIP1Q8TAE8 222 aaPredicted RBP4.39□□□□□ -1.71
VPS29-202ENST00000447578 MAP4K1Q92918 833 aa4.39□□□□□ -1.71
VPS29-202ENST00000447578 CALML4Q96GE6 196 aa4.39□□□□□ -1.71
VPS29-202ENST00000447578 COG3Q96JB2 828 aa4.39□□□□□ -1.71
VPS29-202ENST00000447578 MARK4Q96L34 752 aa4.39□□□□□ -1.71
VPS29-202ENST00000447578 NR1H4Q96RI1 486 aaPredicted RBP4.39□□□□□ -1.71
VPS29-202ENST00000447578 YME1L1Q96TA2 773 aa4.39□□□□□ -1.71
VPS29-202ENST00000447578 SLF1Q9BQI6 1058 aa4.39□□□□□ -1.71
VPS29-202ENST00000447578 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP4.39□□□□□ -1.71
VPS29-202ENST00000447578 TRIM31Q9BZY9 425 aa4.39□□□□□ -1.71
VPS29-202ENST00000447578 CDCP1Q9H5V8 836 aa4.39□□□□□ -1.71
VPS29-202ENST00000447578 CORO1CQ9ULV4 474 aaPredicted RBP4.39□□□□□ -1.71
VPS29-202ENST00000447578 OSGIN2Q9Y236 505 aa4.39□□□□□ -1.71
VPS29-202ENST00000447578 TMEM5Q9Y2B1 443 aa4.39□□□□□ -1.71
VPS29-202ENST00000447578 MYO5BQ9ULV0 1848 aa4.39□□□□□ -1.71
VPS29-202ENST00000447578 CPSF1Q10570 1443 aaKnown RBP4.38□□□□□ -1.71
VPS29-202ENST00000447578 FAM135BQ49AJ0 1406 aa4.38□□□□□ -1.71
VPS29-202ENST00000447578 EDC4Q6P2E9 1401 aaKnown RBP4.38□□□□□ -1.71
VPS29-202ENST00000447578 FAM90A10PA6NDY2 464 aa4.38□□□□□ -1.71
VPS29-202ENST00000447578 TSPY2A6NKD2 308 aa4.38□□□□□ -1.71
VPS29-202ENST00000447578 BTBD19C9JJ37 291 aa4.38□□□□□ -1.71
VPS29-202ENST00000447578 IPO8O15397 1037 aaKnown RBP4.38□□□□□ -1.71
VPS29-202ENST00000447578 TGFB1I1O43294 461 aa4.38□□□□□ -1.71
VPS29-202ENST00000447578 TNFSF14O43557 240 aa4.38□□□□□ -1.71
VPS29-202ENST00000447578 MT-CO3P00414 261 aa4.38□□□□□ -1.71
VPS29-202ENST00000447578 TSPY3P0CV98 308 aa4.38□□□□□ -1.71
VPS29-202ENST00000447578 TSPY8P0CW00 308 aa4.38□□□□□ -1.71
VPS29-202ENST00000447578 CYP4B1P13584 511 aa4.38□□□□□ -1.71
VPS29-202ENST00000447578 ARSAP15289 507 aa4.38□□□□□ -1.71
VPS29-202ENST00000447578 MATN1P21941 496 aa4.38□□□□□ -1.71
VPS29-202ENST00000447578 AVPR2P30518 371 aa4.38□□□□□ -1.71
VPS29-202ENST00000447578 ARL1P40616 181 aaPredicted RBP4.38□□□□□ -1.71
VPS29-202ENST00000447578 HADHAP40939 763 aa4.38□□□□□ -1.71
VPS29-202ENST00000447578 CPA2P48052 419 aa4.38□□□□□ -1.71
VPS29-202ENST00000447578 CTCFP49711 727 aaPredicted RBP4.38□□□□□ -1.71
VPS29-202ENST00000447578 JAK3P52333 1124 aa4.38□□□□□ -1.71
VPS29-202ENST00000447578 SNX16P57768 344 aa4.38□□□□□ -1.71
VPS29-202ENST00000447578 NLRP5P59047 1200 aa4.38□□□□□ -1.71
VPS29-202ENST00000447578 NANOS2P60321 138 aaKnown RBP4.38□□□□□ -1.71
VPS29-202ENST00000447578 IFI35P80217 286 aaPredicted RBP4.38□□□□□ -1.71
VPS29-202ENST00000447578 TSPY1Q01534 308 aa4.38□□□□□ -1.71
VPS29-202ENST00000447578 CALD1Q05682 793 aaKnown RBP4.38□□□□□ -1.71
VPS29-202ENST00000447578 LMAN2Q12907 356 aa4.38□□□□□ -1.71
VPS29-202ENST00000447578 BECN1Q14457 450 aa4.38□□□□□ -1.71
VPS29-202ENST00000447578 RRS1Q15050 365 aaKnown RBP4.38□□□□□ -1.71
VPS29-202ENST00000447578 MON1AQ86VX9 555 aa4.38□□□□□ -1.71
VPS29-202ENST00000447578 SFTPA1Q8IWL2 248 aa4.38□□□□□ -1.71
VPS29-202ENST00000447578 CCDC105Q8IYK2 499 aa4.38□□□□□ -1.71
VPS29-202ENST00000447578 SRBD1Q8N5C6 995 aaKnown RBP4.38□□□□□ -1.71
VPS29-202ENST00000447578 ENDOVQ8N8Q3 282 aaKnown RBP4.38□□□□□ -1.71
VPS29-202ENST00000447578 ZNF548Q8NEK5 533 aaPredicted RBP4.38□□□□□ -1.71
VPS29-202ENST00000447578 SCFD2Q8WU76 684 aa4.38□□□□□ -1.71
VPS29-202ENST00000447578 CNOT9Q92600 299 aaKnown RBP4.38□□□□□ -1.71
VPS29-202ENST00000447578 ATP2A3Q93084 1043 aa4.38□□□□□ -1.71
VPS29-202ENST00000447578 FAM120BQ96EK7 910 aaKnown RBP4.38□□□□□ -1.71
VPS29-202ENST00000447578 FEM1CQ96JP0 617 aa4.38□□□□□ -1.71
VPS29-202ENST00000447578 THUMPD2Q9BTF0 503 aaKnown RBP4.38□□□□□ -1.71
VPS29-202ENST00000447578 HTATIP2Q9BUP3 242 aa4.38□□□□□ -1.71
VPS29-202ENST00000447578 MXD3Q9BW11 206 aa4.38□□□□□ -1.71
VPS29-202ENST00000447578 MUC13Q9H3R2 512 aa4.38□□□□□ -1.71
VPS29-202ENST00000447578 SMARCAD1Q9H4L7 1026 aa4.38□□□□□ -1.71
VPS29-202ENST00000447578 ZCCHC17Q9NP64 241 aaKnown RBP4.38□□□□□ -1.71
VPS29-202ENST00000447578 SNX15Q9NRS6 342 aa4.38□□□□□ -1.71
VPS29-202ENST00000447578 HEY2Q9UBP5 337 aa4.38□□□□□ -1.71
VPS29-202ENST00000447578 SLC25A13Q9UJS0 675 aa4.38□□□□□ -1.71
VPS29-202ENST00000447578 DDX19BQ9UMR2 479 aa4.38□□□□□ -1.71
VPS29-202ENST00000447578 MAGED1Q9Y5V3 778 aaPredicted RBP4.38□□□□□ -1.71
VPS29-202ENST00000447578 SNX8Q9Y5X2 465 aa4.38□□□□□ -1.71
VPS29-202ENST00000447578 TMEM2Q9UHN6 1383 aa4.38□□□□□ -1.71
VPS29-202ENST00000447578 NRXN3Q9Y4C0 1643 aa4.37□□□□□ -1.71
VPS29-202ENST00000447578 NPIPB13A6NJU9 1138 aa4.37□□□□□ -1.71
VPS29-202ENST00000447578 NPIPB5A8MRT5 1133 aa4.37□□□□□ -1.71
VPS29-202ENST00000447578 NPIPB4C9JG80 1138 aa4.37□□□□□ -1.71
VPS29-202ENST00000447578 HNRNPCL1O60812 293 aaKnown RBP4.37□□□□□ -1.71
VPS29-202ENST00000447578 DKC1O60832 514 aaKnown RBP eCLIP4.37□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms