RNA–Protein interactions for RNA: ENST00000441089.1

PTPN4-206, Transcript of protein tyrosine phosphatase, non-receptor type 4, human

TSL 3

Gene PTPN4, Length 671 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN4-206	ENST00000441089	KCND1	Q9NSA2	647 aa		4.95	□□□□□ -1.62
PTPN4-206	ENST00000441089	TMLHE	Q9NVH6	421 aa		4.95	□□□□□ -1.62
PTPN4-206	ENST00000441089	CYTH4	Q9UIA0	394 aa		4.95	□□□□□ -1.62
PTPN4-206	ENST00000441089	PPP2R2C	Q9Y2T4	447 aa		4.95	□□□□□ -1.62
PTPN4-206	ENST00000441089	POLR3K	Q9Y2Y1	108 aa	Predicted RBP	4.95	□□□□□ -1.62
PTPN4-206	ENST00000441089	BZW2	Q9Y6E2	419 aa	Known RBP	4.95	□□□□□ -1.62
PTPN4-206	ENST00000441089	WNT6	Q9Y6F9	365 aa		4.95	□□□□□ -1.62
PTPN4-206	ENST00000441089	SCN1A	P35498	2009 aa		4.95	□□□□□ -1.62
PTPN4-206	ENST00000441089	DCHS2	Q6V1P9	2916 aa		4.95	□□□□□ -1.62
PTPN4-206	ENST00000441089	JMJD1C	Q15652	2540 aa		4.94	□□□□□ -1.62
PTPN4-206	ENST00000441089	CKAP5	Q14008	2032 aa		4.94	□□□□□ -1.62
PTPN4-206	ENST00000441089	TDRD6	O60522	2096 aa	Known RBP	4.94	□□□□□ -1.62
PTPN4-206	ENST00000441089		A0A1B0GVT2	93 aa		4.94	□□□□□ -1.62
PTPN4-206	ENST00000441089		A8MXQ7	604 aa		4.94	□□□□□ -1.62
PTPN4-206	ENST00000441089	TMCO5B	A8MYB1	307 aa		4.94	□□□□□ -1.62
PTPN4-206	ENST00000441089	PJA2	O43164	708 aa		4.94	□□□□□ -1.62
PTPN4-206	ENST00000441089	THAP12	O43422	761 aa		4.94	□□□□□ -1.62
PTPN4-206	ENST00000441089	NRDC	O43847	1150 aa		4.94	□□□□□ -1.62
PTPN4-206	ENST00000441089	PSPN	O60542	156 aa		4.94	□□□□□ -1.62
PTPN4-206	ENST00000441089	HUS1	O60921	280 aa		4.94	□□□□□ -1.62
PTPN4-206	ENST00000441089	OAZ2	O95190	189 aa		4.94	□□□□□ -1.62
PTPN4-206	ENST00000441089	HTR3B	O95264	441 aa		4.94	□□□□□ -1.62
PTPN4-206	ENST00000441089	CKM	P06732	381 aa		4.94	□□□□□ -1.62
PTPN4-206	ENST00000441089	FAM163B	P0C2L3	166 aa		4.94	□□□□□ -1.62
PTPN4-206	ENST00000441089	CCDC172	P0C7W6	258 aa		4.94	□□□□□ -1.62
PTPN4-206	ENST00000441089	VDR	P11473	427 aa		4.94	□□□□□ -1.62
PTPN4-206	ENST00000441089	NCAM1	P13591	858 aa		4.94	□□□□□ -1.62
PTPN4-206	ENST00000441089	CD19	P15391	556 aa		4.94	□□□□□ -1.62
PTPN4-206	ENST00000441089	CD6	P30203	668 aa		4.94	□□□□□ -1.62
PTPN4-206	ENST00000441089	NTSR1	P30989	418 aa		4.94	□□□□□ -1.62
PTPN4-206	ENST00000441089	CDH5	P33151	784 aa	Predicted RBP	4.94	□□□□□ -1.62
PTPN4-206	ENST00000441089	GNL1	P36915	607 aa	Predicted RBP	4.94	□□□□□ -1.62
PTPN4-206	ENST00000441089	MAGEA1	P43355	309 aa		4.94	□□□□□ -1.62
PTPN4-206	ENST00000441089	LSS	P48449	732 aa		4.94	□□□□□ -1.62
PTPN4-206	ENST00000441089	ACADVL	P49748	655 aa		4.94	□□□□□ -1.62
PTPN4-206	ENST00000441089	CDR1	P51861	262 aa		4.94	□□□□□ -1.62
PTPN4-206	ENST00000441089	VAV2	P52735	878 aa		4.94	□□□□□ -1.62
PTPN4-206	ENST00000441089	GALC	P54803	685 aa		4.94	□□□□□ -1.62
PTPN4-206	ENST00000441089	CLDN6	P56747	220 aa		4.94	□□□□□ -1.62
PTPN4-206	ENST00000441089	BPIFB4	P59827	614 aa		4.94	□□□□□ -1.62
PTPN4-206	ENST00000441089	PSMC1	P62191	440 aa	Known RBP	4.94	□□□□□ -1.62
PTPN4-206	ENST00000441089	YWHAE	P62258	255 aa	Known RBP	4.94	□□□□□ -1.62
PTPN4-206	ENST00000441089	NOMO3	P69849	1222 aa		4.94	□□□□□ -1.62
PTPN4-206	ENST00000441089	GABRE	P78334	506 aa		4.94	□□□□□ -1.62
PTPN4-206	ENST00000441089	E2F1	Q01094	437 aa		4.94	□□□□□ -1.62
PTPN4-206	ENST00000441089	BNC1	Q01954	994 aa		4.94	□□□□□ -1.62
PTPN4-206	ENST00000441089	PTP4A2	Q12974	167 aa		4.94	□□□□□ -1.62
PTPN4-206	ENST00000441089	ZNF77	Q15935	545 aa		4.94	□□□□□ -1.62
PTPN4-206	ENST00000441089	CLEC16A	Q2KHT3	1053 aa		4.94	□□□□□ -1.62
PTPN4-206	ENST00000441089	KIF19	Q2TAC6	998 aa		4.94	□□□□□ -1.62
PTPN4-206	ENST00000441089	CCDC122	Q5T0U0	273 aa		4.94	□□□□□ -1.62
PTPN4-206	ENST00000441089	EMC10	Q5UCC4	262 aa		4.94	□□□□□ -1.62
PTPN4-206	ENST00000441089	NAA35	Q5VZE5	725 aa		4.94	□□□□□ -1.62
PTPN4-206	ENST00000441089	ARHGAP17	Q68EM7	881 aa		4.94	□□□□□ -1.62
PTPN4-206	ENST00000441089	ALKBH5	Q6P6C2	394 aa	Known RBP	4.94	□□□□□ -1.62
PTPN4-206	ENST00000441089	PAQR9	Q6ZVX9	377 aa		4.94	□□□□□ -1.62
PTPN4-206	ENST00000441089	DPH6	Q7L8W6	267 aa		4.94	□□□□□ -1.62
PTPN4-206	ENST00000441089	LRRTM3	Q86VH5	581 aa		4.94	□□□□□ -1.62
PTPN4-206	ENST00000441089	UNC93A	Q86WB7	457 aa		4.94	□□□□□ -1.62
PTPN4-206	ENST00000441089	CRYBG2	Q8N1P7	616 aa		4.94	□□□□□ -1.62
PTPN4-206	ENST00000441089	KIAA1958	Q8N8K9	716 aa		4.94	□□□□□ -1.62
PTPN4-206	ENST00000441089	GOLM1	Q8NBJ4	401 aa		4.94	□□□□□ -1.62
PTPN4-206	ENST00000441089	C1orf131	Q8NDD1	294 aa	Known RBP	4.94	□□□□□ -1.62
PTPN4-206	ENST00000441089	PDZD8	Q8NEN9	1154 aa		4.94	□□□□□ -1.62
PTPN4-206	ENST00000441089	ARHGEF26	Q96DR7	871 aa		4.94	□□□□□ -1.62
PTPN4-206	ENST00000441089	CYFIP2	Q96F07	1278 aa		4.94	□□□□□ -1.62
PTPN4-206	ENST00000441089	CNDP2	Q96KP4	475 aa	Known RBP	4.94	□□□□□ -1.62
PTPN4-206	ENST00000441089	PGLYRP2	Q96PD5	576 aa		4.94	□□□□□ -1.62
PTPN4-206	ENST00000441089	PKMYT1	Q99640	499 aa		4.94	□□□□□ -1.62
PTPN4-206	ENST00000441089	SYT15	Q9BQS2	421 aa		4.94	□□□□□ -1.62
PTPN4-206	ENST00000441089	GPR174	Q9BXC1	333 aa		4.94	□□□□□ -1.62
PTPN4-206	ENST00000441089	NT5C1A	Q9BXI3	368 aa		4.94	□□□□□ -1.62
PTPN4-206	ENST00000441089	ASPN	Q9BXN1	380 aa		4.94	□□□□□ -1.62
PTPN4-206	ENST00000441089	THAP2	Q9H0W7	228 aa		4.94	□□□□□ -1.62
PTPN4-206	ENST00000441089	ISCU	Q9H1K1	167 aa		4.94	□□□□□ -1.62
PTPN4-206	ENST00000441089	SLC25A18	Q9H1K4	315 aa		4.94	□□□□□ -1.62
PTPN4-206	ENST00000441089	PCED1A	Q9H1Q7	454 aa		4.94	□□□□□ -1.62
PTPN4-206	ENST00000441089	SLC6A17	Q9H1V8	727 aa		4.94	□□□□□ -1.62
PTPN4-206	ENST00000441089	SNX25	Q9H3E2	840 aa		4.94	□□□□□ -1.62
PTPN4-206	ENST00000441089	DEF6	Q9H4E7	631 aa		4.94	□□□□□ -1.62
PTPN4-206	ENST00000441089	ARHGEF4	Q9NR80	690 aa		4.94	□□□□□ -1.62
PTPN4-206	ENST00000441089	FAM49B	Q9NUQ9	324 aa		4.94	□□□□□ -1.62
PTPN4-206	ENST00000441089	TMEM30A	Q9NV96	361 aa		4.94	□□□□□ -1.62
PTPN4-206	ENST00000441089	SEPT11	Q9NVA2	429 aa	Known RBP	4.94	□□□□□ -1.62
PTPN4-206	ENST00000441089	GPATCH2	Q9NW75	528 aa		4.94	□□□□□ -1.62
PTPN4-206	ENST00000441089	DDX43	Q9NXZ2	648 aa	Known RBP	4.94	□□□□□ -1.62
PTPN4-206	ENST00000441089	R3HCC1	Q9Y3T6	440 aa	Known RBP	4.94	□□□□□ -1.62
PTPN4-206	ENST00000441089	PCDHA13	Q9Y5I0	950 aa		4.94	□□□□□ -1.62
PTPN4-206	ENST00000441089	DUSP10	Q9Y6W6	482 aa		4.94	□□□□□ -1.62
PTPN4-206	ENST00000441089	COL6A5	A8TX70	2615 aa		4.93	□□□□□ -1.62
PTPN4-206	ENST00000441089	RTTN	Q86VV8	2226 aa		4.93	□□□□□ -1.62
PTPN4-206	ENST00000441089	ZFC3H1	O60293	1989 aa	Known RBP	4.93	□□□□□ -1.62
PTPN4-206	ENST00000441089	TRAV19	A0A0A6YYK7	116 aa		4.93	□□□□□ -1.62
PTPN4-206	ENST00000441089	TCRBV5S1A1T	A0A578	114 aa		4.93	□□□□□ -1.62
PTPN4-206	ENST00000441089	MTMR11	A4FU01	709 aa		4.93	□□□□□ -1.62
PTPN4-206	ENST00000441089		M0QYV0	167 aa		4.93	□□□□□ -1.62
PTPN4-206	ENST00000441089	TULP2	O00295	520 aa		4.93	□□□□□ -1.62
PTPN4-206	ENST00000441089	CLDN5	O00501	218 aa		4.93	□□□□□ -1.62
PTPN4-206	ENST00000441089	SLC9A3R1	O14745	358 aa	Predicted RBP	4.93	□□□□□ -1.62
PTPN4-206	ENST00000441089	YKT6	O15498	198 aa		4.93	□□□□□ -1.62

Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms