RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 COL28A1Q2UY09 1125 aa3.68□□□□□ -1.82
VPS41-207ENST00000439468 CES5AQ6NT32 575 aa3.68□□□□□ -1.82
VPS41-207ENST00000439468 TTI2Q6NXR4 508 aa3.68□□□□□ -1.82
VPS41-207ENST00000439468 CDC73Q6P1J9 531 aa3.68□□□□□ -1.82
VPS41-207ENST00000439468 FBXO46Q6PJ61 603 aaPredicted RBP3.68□□□□□ -1.82
VPS41-207ENST00000439468 C11orf65Q8NCR3 313 aa3.68□□□□□ -1.82
VPS41-207ENST00000439468 ETNPPLQ8TBG4 499 aa3.68□□□□□ -1.82
VPS41-207ENST00000439468 GPT2Q8TD30 523 aa3.68□□□□□ -1.82
VPS41-207ENST00000439468 CREB3L4Q8TEY5 395 aa3.68□□□□□ -1.82
VPS41-207ENST00000439468 MARK4Q96L34 752 aa3.68□□□□□ -1.82
VPS41-207ENST00000439468 CENPOQ9BU64 300 aa3.68□□□□□ -1.82
VPS41-207ENST00000439468 FTOQ9C0B1 505 aaKnown RBP eCLIP3.68□□□□□ -1.82
VPS41-207ENST00000439468 TKTL2Q9H0I9 626 aa3.68□□□□□ -1.82
VPS41-207ENST00000439468 HIPK2Q9H2X6 1198 aa3.68□□□□□ -1.82
VPS41-207ENST00000439468 GHITMQ9H3K2 345 aa3.68□□□□□ -1.82
VPS41-207ENST00000439468 MRPL44Q9H9J2 332 aaKnown RBP3.68□□□□□ -1.82
VPS41-207ENST00000439468 POLR1BQ9H9Y6 1135 aa3.68□□□□□ -1.82
VPS41-207ENST00000439468 FBXO40Q9UH90 709 aa3.68□□□□□ -1.82
VPS41-207ENST00000439468 PCDHA12Q9UN75 941 aa3.68□□□□□ -1.82
VPS41-207ENST00000439468 A4GNTQ9UNA3 340 aa3.68□□□□□ -1.82
VPS41-207ENST00000439468 TYW5A2RUC4 315 aaKnown RBP3.67□□□□□ -1.82
VPS41-207ENST00000439468 HSPB2A8KAH6 182 aa3.67□□□□□ -1.82
VPS41-207ENST00000439468 KLRF2D3W0D1 207 aa3.67□□□□□ -1.82
VPS41-207ENST00000439468 F5H0A9 414 aaPredicted RBP3.67□□□□□ -1.82
VPS41-207ENST00000439468 H0YGN5 161 aa3.67□□□□□ -1.82
VPS41-207ENST00000439468 RNMTO43148 476 aaKnown RBP3.67□□□□□ -1.82
VPS41-207ENST00000439468 ZBED4O75132 1171 aa3.67□□□□□ -1.82
VPS41-207ENST00000439468 TIPRLO75663 272 aa3.67□□□□□ -1.82
VPS41-207ENST00000439468 GJB3O75712 270 aa3.67□□□□□ -1.82
VPS41-207ENST00000439468 EPN2O95208 641 aa3.67□□□□□ -1.82
VPS41-207ENST00000439468 MLYCDO95822 493 aa3.67□□□□□ -1.82
VPS41-207ENST00000439468 FGF2P09038 288 aa3.67□□□□□ -1.82
VPS41-207ENST00000439468 T-ENOLP0DO92 83 aa3.67□□□□□ -1.82
VPS41-207ENST00000439468 SRD5A1P18405 259 aa3.67□□□□□ -1.82
VPS41-207ENST00000439468 ITGAXP20702 1163 aa3.67□□□□□ -1.82
VPS41-207ENST00000439468 CCKBRP32239 447 aa3.67□□□□□ -1.82
VPS41-207ENST00000439468 RYKP34925 604 aa3.67□□□□□ -1.82
VPS41-207ENST00000439468 HADHAP40939 763 aa3.67□□□□□ -1.82
VPS41-207ENST00000439468 CASP2P42575 452 aa3.67□□□□□ -1.82
VPS41-207ENST00000439468 THBS3P49746 956 aa3.67□□□□□ -1.82
VPS41-207ENST00000439468 YWHAZP63104 245 aaKnown RBP3.67□□□□□ -1.82
VPS41-207ENST00000439468 FRG1Q14331 258 aaKnown RBP3.67□□□□□ -1.82
VPS41-207ENST00000439468 TOMM20Q15388 145 aa3.67□□□□□ -1.82
VPS41-207ENST00000439468 HSPB2Q16082 182 aa3.67□□□□□ -1.82
VPS41-207ENST00000439468 PRAMEF19Q5SWL8 479 aa3.67□□□□□ -1.82
VPS41-207ENST00000439468 TXNDC8Q6A555 127 aa3.67□□□□□ -1.82
VPS41-207ENST00000439468 CYP20A1Q6UW02 462 aa3.67□□□□□ -1.82
VPS41-207ENST00000439468 IKBIPQ70UQ0 350 aa3.67□□□□□ -1.82
VPS41-207ENST00000439468 CTU1Q7Z7A3 348 aaKnown RBP3.67□□□□□ -1.82
VPS41-207ENST00000439468 PCGF5Q86SE9 256 aa3.67□□□□□ -1.82
VPS41-207ENST00000439468 ENGASEQ8NFI3 743 aa3.67□□□□□ -1.82
VPS41-207ENST00000439468 TMEM170AQ8WVE7 144 aa3.67□□□□□ -1.82
VPS41-207ENST00000439468 LPAR1Q92633 364 aa3.67□□□□□ -1.82
VPS41-207ENST00000439468 USP6NLQ92738 828 aa3.67□□□□□ -1.82
VPS41-207ENST00000439468 INPP5DQ92835 1189 aa3.67□□□□□ -1.82
VPS41-207ENST00000439468 INTS12Q96CB8 462 aaKnown RBP3.67□□□□□ -1.82
VPS41-207ENST00000439468 LYZL4Q96KX0 146 aa3.67□□□□□ -1.82
VPS41-207ENST00000439468 NEUROD6Q96NK8 337 aa3.67□□□□□ -1.82
VPS41-207ENST00000439468 BBS4Q96RK4 519 aa3.67□□□□□ -1.82
VPS41-207ENST00000439468 WDR77Q9BQA1 342 aaPredicted RBP3.67□□□□□ -1.82
VPS41-207ENST00000439468 NPFFR1Q9GZQ6 430 aa3.67□□□□□ -1.82
VPS41-207ENST00000439468 FZD3Q9NPG1 666 aa3.67□□□□□ -1.82
VPS41-207ENST00000439468 EIF2B3Q9NR50 452 aaKnown RBP3.67□□□□□ -1.82
VPS41-207ENST00000439468 WWOXQ9NZC7 414 aa3.67□□□□□ -1.82
VPS41-207ENST00000439468 SEL1LQ9UBV2 794 aa3.67□□□□□ -1.82
VPS41-207ENST00000439468 ADAM18Q9Y3Q7 739 aa3.67□□□□□ -1.82
VPS41-207ENST00000439468 LSM4Q9Y4Z0 139 aaKnown RBP3.67□□□□□ -1.82
VPS41-207ENST00000439468 KCNE2Q9Y6J6 123 aa3.67□□□□□ -1.82
VPS41-207ENST00000439468 RSF1Q96T23 1441 aaPredicted RBP3.67□□□□□ -1.82
VPS41-207ENST00000439468 CNTNAP2Q9UHC6 1331 aa3.67□□□□□ -1.82
VPS41-207ENST00000439468 A0A096LPK6 155 aa3.66□□□□□ -1.82
VPS41-207ENST00000439468 A0A1W2PQF6 199 aa3.66□□□□□ -1.82
VPS41-207ENST00000439468 LACTBL1A8MY62 500 aa3.66□□□□□ -1.82
VPS41-207ENST00000439468 LAMP2P13473 410 aa3.66□□□□□ -1.82
VPS41-207ENST00000439468 IL7RP16871 459 aa3.66□□□□□ -1.82
VPS41-207ENST00000439468 TBXAS1P24557 533 aaPredicted RBP3.66□□□□□ -1.82
VPS41-207ENST00000439468 MLH1P40692 756 aa3.66□□□□□ -1.82
VPS41-207ENST00000439468 KCNJ4P48050 445 aa3.66□□□□□ -1.82
VPS41-207ENST00000439468 RFX5P48382 616 aaPredicted RBP3.66□□□□□ -1.82
VPS41-207ENST00000439468 CENPAP49450 140 aa3.66□□□□□ -1.82
VPS41-207ENST00000439468 RGS19P49795 217 aa3.66□□□□□ -1.82
VPS41-207ENST00000439468 RARSP54136 660 aaKnown RBP3.66□□□□□ -1.82
VPS41-207ENST00000439468 DRG2P55039 364 aaKnown RBP3.66□□□□□ -1.82
VPS41-207ENST00000439468 EIF3BP55884 814 aaKnown RBP3.66□□□□□ -1.82
VPS41-207ENST00000439468 P2RX3P56373 397 aa3.66□□□□□ -1.82
VPS41-207ENST00000439468 HDAC4P56524 1084 aa3.66□□□□□ -1.82
VPS41-207ENST00000439468 NANOS2P60321 138 aaKnown RBP3.66□□□□□ -1.82
VPS41-207ENST00000439468 RPL7AP62424 266 aaKnown RBP3.66□□□□□ -1.82
VPS41-207ENST00000439468 OLR1P78380 273 aa3.66□□□□□ -1.82
VPS41-207ENST00000439468 EIF4A2Q14240 407 aaKnown RBP3.66□□□□□ -1.82
VPS41-207ENST00000439468 FGFBP1Q14512 234 aa3.66□□□□□ -1.82
VPS41-207ENST00000439468 GSTA3Q16772 222 aa3.66□□□□□ -1.82
VPS41-207ENST00000439468 SOWAHAQ2M3V2 549 aa3.66□□□□□ -1.82
VPS41-207ENST00000439468 ATG9BQ674R7 924 aa3.66□□□□□ -1.82
VPS41-207ENST00000439468 CPLX2Q6PUV4 134 aaKnown RBP3.66□□□□□ -1.82
VPS41-207ENST00000439468 SLC16A12Q6ZSM3 486 aa3.66□□□□□ -1.82
VPS41-207ENST00000439468 TBC1D26Q86UD7 250 aa3.66□□□□□ -1.82
VPS41-207ENST00000439468 FAM185AQ8N0U4 392 aa3.66□□□□□ -1.82
VPS41-207ENST00000439468 ADSSL1Q8N142 457 aa3.66□□□□□ -1.82
VPS41-207ENST00000439468 WDTC1Q8N5D0 677 aa3.66□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms