RNA–Protein interactions for RNA: ENST00000428728.5

TRIM39-209, Transcript of tripartite motif containing 39, humanhuman

TSL 3

Gene TRIM39, Length 1,013 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-209ENST00000428728 FAXCQ5TGI0 409 aa17.25■□□□□ 0.35
TRIM39-209ENST00000428728 E4F1Q66K89 784 aaPredicted RBP17.25■□□□□ 0.35
TRIM39-209ENST00000428728 PPP1R2P3Q6NXS1 205 aa17.25■□□□□ 0.35
TRIM39-209ENST00000428728 MACC1Q6ZN28 852 aa17.25■□□□□ 0.35
TRIM39-209ENST00000428728 EFL1Q7Z2Z2 1120 aaKnown RBP17.25■□□□□ 0.35
TRIM39-209ENST00000428728 BTN2A2Q8WVV5 523 aa17.25■□□□□ 0.35
TRIM39-209ENST00000428728 VCPIP1Q96JH7 1222 aa17.25■□□□□ 0.35
TRIM39-209ENST00000428728 BBC3Q96PG8 261 aaPredicted RBP17.25■□□□□ 0.35
TRIM39-209ENST00000428728 KCTD15Q96SI1 283 aaPredicted RBP17.25■□□□□ 0.35
TRIM39-209ENST00000428728 CPEB1Q9BZB8 566 aaKnown RBP17.25■□□□□ 0.35
TRIM39-209ENST00000428728 SLC13A1Q9BZW2 595 aa17.25■□□□□ 0.35
TRIM39-209ENST00000428728 SLC39A8Q9C0K1 460 aa17.25■□□□□ 0.35
TRIM39-209ENST00000428728 PCDH12Q9NPG4 1184 aa17.25■□□□□ 0.35
TRIM39-209ENST00000428728 RTN4Q9NQC3 1192 aaKnown RBP17.25■□□□□ 0.35
TRIM39-209ENST00000428728 MYO6Q9UM54 1294 aa17.25■□□□□ 0.35
TRIM39-209ENST00000428728 PTPRQQ9UMZ3 2332 aa17.25■□□□□ 0.35
TRIM39-209ENST00000428728 ARHGAP42A6NI28 874 aa17.24■□□□□ 0.35
TRIM39-209ENST00000428728 MUSKO15146 869 aa17.24■□□□□ 0.35
TRIM39-209ENST00000428728 DAPK3O43293 454 aa17.24■□□□□ 0.35
TRIM39-209ENST00000428728 PRAMEF11O60813 436 aa17.24■□□□□ 0.35
TRIM39-209ENST00000428728 USP12O75317 370 aa17.24■□□□□ 0.35
TRIM39-209ENST00000428728 GCATO75600 419 aa17.24■□□□□ 0.35
TRIM39-209ENST00000428728 PRKCGP05129 697 aa17.24■□□□□ 0.35
TRIM39-209ENST00000428728 C6P13671 934 aa17.24■□□□□ 0.35
TRIM39-209ENST00000428728 TGM2P21980 687 aa17.24■□□□□ 0.35
TRIM39-209ENST00000428728 EIF4A3P38919 411 aaKnown RBP17.24■□□□□ 0.35
TRIM39-209ENST00000428728 RGRP47804 291 aa17.24■□□□□ 0.35
TRIM39-209ENST00000428728 PAPOLAP51003 745 aaKnown RBP17.24■□□□□ 0.35
TRIM39-209ENST00000428728 NDST2P52849 883 aa17.24■□□□□ 0.35
TRIM39-209ENST00000428728 ADKP55263 362 aaKnown RBP17.24■□□□□ 0.35
TRIM39-209ENST00000428728 YPEL5P62699 121 aa17.24■□□□□ 0.35
TRIM39-209ENST00000428728 GABREP78334 506 aa17.24■□□□□ 0.35
TRIM39-209ENST00000428728 NR0B2Q15466 257 aa17.24■□□□□ 0.35
TRIM39-209ENST00000428728 TMEM52BQ4KMG9 183 aa17.24■□□□□ 0.35
TRIM39-209ENST00000428728 PPP6R3Q5H9R7 873 aaPredicted RBP17.24■□□□□ 0.35
TRIM39-209ENST00000428728 ERMARDQ5T6L9 678 aa17.24■□□□□ 0.35
TRIM39-209ENST00000428728 PLEKHA7Q6IQ23 1121 aa17.24■□□□□ 0.35
TRIM39-209ENST00000428728 FGF11Q92914 225 aa17.24■□□□□ 0.35
TRIM39-209ENST00000428728 ZNF653Q96CK0 615 aa17.24■□□□□ 0.35
TRIM39-209ENST00000428728 SUV39H2Q9H5I1 410 aa17.24■□□□□ 0.35
TRIM39-209ENST00000428728 HAUS4Q9H6D7 363 aa17.24■□□□□ 0.35
TRIM39-209ENST00000428728 SP110Q9HB58 689 aa17.24■□□□□ 0.35
TRIM39-209ENST00000428728 DONSONQ9NYP3 566 aa17.24■□□□□ 0.35
TRIM39-209ENST00000428728 LOC400499M0QZD8 3231 aa17.24■□□□□ 0.35
TRIM39-209ENST00000428728 BAHCC1Q9P281 2608 aa17.23■□□□□ 0.35
TRIM39-209ENST00000428728 TSPAN11A1L157 253 aa17.23■□□□□ 0.35
TRIM39-209ENST00000428728 DFFAO00273 331 aa17.23■□□□□ 0.35
TRIM39-209ENST00000428728 PRPSAP2O60256 369 aa17.23■□□□□ 0.35
TRIM39-209ENST00000428728 RNF8O76064 485 aa17.23■□□□□ 0.35
TRIM39-209ENST00000428728 CELA2BP08218 269 aaPredicted RBP17.23■□□□□ 0.35
TRIM39-209ENST00000428728 MMP12P39900 470 aa17.23■□□□□ 0.35
TRIM39-209ENST00000428728 PPARDQ03181 441 aa17.23■□□□□ 0.35
TRIM39-209ENST00000428728 GRM3Q14832 879 aa17.23■□□□□ 0.35
TRIM39-209ENST00000428728 LRRC14Q15048 493 aa17.23■□□□□ 0.35
TRIM39-209ENST00000428728 UGP2Q16851 508 aa17.23■□□□□ 0.35
TRIM39-209ENST00000428728 FILIP1LQ4L180 1135 aa17.23■□□□□ 0.35
TRIM39-209ENST00000428728 PERM1Q5SV97 790 aa17.23■□□□□ 0.35
TRIM39-209ENST00000428728 ERAP2Q6P179 960 aa17.23■□□□□ 0.35
TRIM39-209ENST00000428728 RFX8Q6ZV50 586 aa17.23■□□□□ 0.35
TRIM39-209ENST00000428728 ZNF571Q7Z3V5 609 aaPredicted RBP17.23■□□□□ 0.35
TRIM39-209ENST00000428728 ZSWIM9Q86XI8 627 aa17.23■□□□□ 0.35
TRIM39-209ENST00000428728 CAMK1DQ8IU85 385 aa17.23■□□□□ 0.35
TRIM39-209ENST00000428728 SLC35F3Q8IY50 421 aa17.23■□□□□ 0.35
TRIM39-209ENST00000428728 ARFGAP1Q8N6T3 406 aa17.23■□□□□ 0.35
TRIM39-209ENST00000428728 NPWQ8N729 165 aa17.23■□□□□ 0.35
TRIM39-209ENST00000428728 PAF1Q8N7H5 531 aa17.23■□□□□ 0.35
TRIM39-209ENST00000428728 TSEN2Q8NCE0 465 aaKnown RBP17.23■□□□□ 0.35
TRIM39-209ENST00000428728 NAF1Q96HR8 494 aaKnown RBP17.23■□□□□ 0.35
TRIM39-209ENST00000428728 CINPQ9BW66 212 aaPredicted RBP17.23■□□□□ 0.35
TRIM39-209ENST00000428728 NCKIPSDQ9NZQ3 722 aa17.23■□□□□ 0.35
TRIM39-209ENST00000428728 CNOT8Q9UFF9 292 aaKnown RBP17.23■□□□□ 0.35
TRIM39-209ENST00000428728 SALL4Q9UJQ4 1053 aa17.23■□□□□ 0.35
TRIM39-209ENST00000428728 IGSF10Q6WRI0 2623 aa17.22■□□□□ 0.35
TRIM39-209ENST00000428728 TPP1O14773 563 aa17.22■□□□□ 0.35
TRIM39-209ENST00000428728 BUB1BO60566 1050 aaPredicted RBP17.22■□□□□ 0.35
TRIM39-209ENST00000428728 PALMO75781 387 aa17.22■□□□□ 0.35
TRIM39-209ENST00000428728 FTLP02792 175 aaPredicted RBP17.22■□□□□ 0.35
TRIM39-209ENST00000428728 PCCBP05166 539 aa17.22■□□□□ 0.35
TRIM39-209ENST00000428728 ANXA6P08133 673 aa17.22■□□□□ 0.35
TRIM39-209ENST00000428728 TSHRP16473 764 aa17.22■□□□□ 0.35
TRIM39-209ENST00000428728 ERCC2P18074 760 aa17.22■□□□□ 0.35
TRIM39-209ENST00000428728 MIPP30301 263 aa17.22■□□□□ 0.35
TRIM39-209ENST00000428728 SUOXP51687 545 aa17.22■□□□□ 0.35
TRIM39-209ENST00000428728 ACAP1Q15027 740 aa17.22■□□□□ 0.35
TRIM39-209ENST00000428728 WSCD2Q2TBF2 565 aa17.22■□□□□ 0.35
TRIM39-209ENST00000428728 C6orf132Q5T0Z8 1188 aa17.22■□□□□ 0.35
TRIM39-209ENST00000428728 BRAT1Q6PJG6 821 aa17.22■□□□□ 0.35
TRIM39-209ENST00000428728 ARHGAP36Q6ZRI8 547 aa17.22■□□□□ 0.35
TRIM39-209ENST00000428728 CYP4V2Q6ZWL3 525 aaPredicted RBP17.22■□□□□ 0.35
TRIM39-209ENST00000428728 HID1Q8IV36 788 aa17.22■□□□□ 0.35
TRIM39-209ENST00000428728 ARHGAP12Q8IWW6 846 aa17.22■□□□□ 0.35
TRIM39-209ENST00000428728 TSACCQ96A04 125 aaPredicted RBP17.22■□□□□ 0.35
TRIM39-209ENST00000428728 FCRL3Q96P31 734 aaPredicted RBP17.22■□□□□ 0.35
TRIM39-209ENST00000428728 LGMNQ99538 433 aa17.22■□□□□ 0.35
TRIM39-209ENST00000428728 BPIFA3Q9BQP9 254 aa17.22■□□□□ 0.35
TRIM39-209ENST00000428728 BOCQ9BWV1 1114 aa17.22■□□□□ 0.35
TRIM39-209ENST00000428728 CLPBQ9H078 707 aa17.22■□□□□ 0.35
TRIM39-209ENST00000428728 ATP13A3Q9H7F0 1226 aa17.22■□□□□ 0.35
TRIM39-209ENST00000428728 SYNDIG1Q9H7V2 258 aa17.22■□□□□ 0.35
TRIM39-209ENST00000428728 MYO1AQ9UBC5 1043 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms