RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 TDRD1Q9BXT4 1180 aaKnown RBP10.19□□□□□ -0.78
CD44-207ENST00000425428 ZDHHC4Q9NPG8 344 aa10.19□□□□□ -0.78
CD44-207ENST00000425428 HACD3Q9P035 362 aa10.19□□□□□ -0.78
CD44-207ENST00000425428 DKK3Q9UBP4 350 aa10.19□□□□□ -0.78
CD44-207ENST00000425428 CHKBQ9Y259 395 aa10.19□□□□□ -0.78
CD44-207ENST00000425428 TCRBV21S2A2A0A5A6 115 aa10.18□□□□□ -0.78
CD44-207ENST00000425428 MAGEB16A2A368 324 aa10.18□□□□□ -0.78
CD44-207ENST00000425428 TMEM221A6NGB7 291 aa10.18□□□□□ -0.78
CD44-207ENST00000425428 M0R296 226 aa10.18□□□□□ -0.78
CD44-207ENST00000425428 MUSKO15146 869 aa10.18□□□□□ -0.78
CD44-207ENST00000425428 PGLSO95336 258 aa10.18□□□□□ -0.78
CD44-207ENST00000425428 PIGNO95427 931 aa10.18□□□□□ -0.78
CD44-207ENST00000425428 CRTAMO95727 393 aa10.18□□□□□ -0.78
CD44-207ENST00000425428 MLNP12872 115 aa10.18□□□□□ -0.78
CD44-207ENST00000425428 ITGB7P26010 798 aa10.18□□□□□ -0.78
CD44-207ENST00000425428 SLC8A1P32418 973 aa10.18□□□□□ -0.78
CD44-207ENST00000425428 CLCN5P51795 746 aa10.18□□□□□ -0.78
CD44-207ENST00000425428 NEK3P51956 506 aa10.18□□□□□ -0.78
CD44-207ENST00000425428 SATB1Q01826 763 aa10.18□□□□□ -0.78
CD44-207ENST00000425428 NIPAL4Q0D2K0 466 aa10.18□□□□□ -0.78
CD44-207ENST00000425428 CST6Q15828 149 aa10.18□□□□□ -0.78
CD44-207ENST00000425428 HIF1AQ16665 826 aa10.18□□□□□ -0.78
CD44-207ENST00000425428 SYCP2LQ5T4T6 812 aa10.18□□□□□ -0.78
CD44-207ENST00000425428 IER5LQ5T953 404 aa10.18□□□□□ -0.78
CD44-207ENST00000425428 LRRC8BQ6P9F7 803 aa10.18□□□□□ -0.78
CD44-207ENST00000425428 KIAA1324Q6UXG2 1013 aaKnown RBP10.18□□□□□ -0.78
CD44-207ENST00000425428 SFTPA1Q8IWL2 248 aa10.18□□□□□ -0.78
CD44-207ENST00000425428 SLC25A41Q8N5S1 370 aa10.18□□□□□ -0.78
CD44-207ENST00000425428 EIF1ADQ8N9N8 165 aaKnown RBP10.18□□□□□ -0.78
CD44-207ENST00000425428 GLIS1Q8NBF1 620 aa10.18□□□□□ -0.78
CD44-207ENST00000425428 CHST14Q8NCH0 376 aa10.18□□□□□ -0.78
CD44-207ENST00000425428 PPHLN1Q8NEY8 458 aaKnown RBP10.18□□□□□ -0.78
CD44-207ENST00000425428 CPT1BQ92523 772 aa10.18□□□□□ -0.78
CD44-207ENST00000425428 FMO2Q99518 471 aa10.18□□□□□ -0.78
CD44-207ENST00000425428 NAT9Q9BTE0 207 aa10.18□□□□□ -0.78
CD44-207ENST00000425428 IL22Q9GZX6 179 aa10.18□□□□□ -0.78
CD44-207ENST00000425428 RSPH9Q9H1X1 276 aaPredicted RBP10.18□□□□□ -0.78
CD44-207ENST00000425428 CHRDQ9H2X0 955 aa10.18□□□□□ -0.78
CD44-207ENST00000425428 CD320Q9NPF0 282 aa10.18□□□□□ -0.78
CD44-207ENST00000425428 ARGLU1Q9NWB6 273 aaPredicted RBP10.18□□□□□ -0.78
CD44-207ENST00000425428 PPM1HQ9ULR3 514 aa10.18□□□□□ -0.78
CD44-207ENST00000425428 NEU2Q9Y3R4 380 aa10.18□□□□□ -0.78
CD44-207ENST00000425428 TTC24A2A3L6 582 aaPredicted RBP10.17□□□□□ -0.78
CD44-207ENST00000425428 C2orf81A6NN90 581 aa10.17□□□□□ -0.78
CD44-207ENST00000425428 ANKRD66B4E2M5 251 aa10.17□□□□□ -0.78
CD44-207ENST00000425428 GOLGA8MH3BSY2 632 aa10.17□□□□□ -0.78
CD44-207ENST00000425428 PPFIA2O75334 1257 aa10.17□□□□□ -0.78
CD44-207ENST00000425428 ZNF217O75362 1048 aa10.17□□□□□ -0.78
CD44-207ENST00000425428 ZNF821O75541 412 aaPredicted RBP10.17□□□□□ -0.78
CD44-207ENST00000425428 SUN1O94901 812 aa10.17□□□□□ -0.78
CD44-207ENST00000425428 APBB3O95704 486 aa10.17□□□□□ -0.78
CD44-207ENST00000425428 MAGEA6P43360 314 aa10.17□□□□□ -0.78
CD44-207ENST00000425428 RGRP47804 291 aa10.17□□□□□ -0.78
CD44-207ENST00000425428 CXCL12P48061 93 aa10.17□□□□□ -0.78
CD44-207ENST00000425428 KCNJ11Q14654 390 aa10.17□□□□□ -0.78
CD44-207ENST00000425428 SLC1A5Q15758 541 aa10.17□□□□□ -0.78
CD44-207ENST00000425428 RNASEH2BQ5TBB1 312 aaKnown RBP10.17□□□□□ -0.78
CD44-207ENST00000425428 ARMC3Q5W041 872 aa10.17□□□□□ -0.78
CD44-207ENST00000425428 HIBCHQ6NVY1 386 aaPredicted RBP10.17□□□□□ -0.78
CD44-207ENST00000425428 ERN2Q76MJ5 926 aaKnown RBP10.17□□□□□ -0.78
CD44-207ENST00000425428 NLRP9Q7RTR0 991 aa10.17□□□□□ -0.78
CD44-207ENST00000425428 PRPF39Q86UA1 669 aaKnown RBP10.17□□□□□ -0.78
CD44-207ENST00000425428 CCDC25Q86WR0 208 aa10.17□□□□□ -0.78
CD44-207ENST00000425428 CCNJLQ8IV13 435 aa10.17□□□□□ -0.78
CD44-207ENST00000425428 CAMKK1Q8N5S9 505 aa10.17□□□□□ -0.78
CD44-207ENST00000425428 HMGB4Q8WW32 186 aa10.17□□□□□ -0.78
CD44-207ENST00000425428 PBXIP1Q96AQ6 731 aa10.17□□□□□ -0.78
CD44-207ENST00000425428 CLDN23Q96B33 292 aa10.17□□□□□ -0.78
CD44-207ENST00000425428 OXNAD1Q96HP4 312 aaPredicted RBP10.17□□□□□ -0.78
CD44-207ENST00000425428 MRGPRX2Q96LB1 330 aa10.17□□□□□ -0.78
CD44-207ENST00000425428 TRABDQ9H4I3 376 aa10.17□□□□□ -0.78
CD44-207ENST00000425428 SPATA6Q9NWH7 488 aaPredicted RBP10.17□□□□□ -0.78
CD44-207ENST00000425428 COL6A3P12111 3177 aa10.17□□□□□ -0.78
CD44-207ENST00000425428 MUC22E2RYF6 1773 aaPredicted RBP10.16□□□□□ -0.78
CD44-207ENST00000425428 ESYT3A0FGR9 886 aa10.16□□□□□ -0.78
CD44-207ENST00000425428 SDR42E2A6NKP2 422 aa10.16□□□□□ -0.78
CD44-207ENST00000425428 C16orf96A6NNT2 1141 aa10.16□□□□□ -0.78
CD44-207ENST00000425428 UPK3BL1B0FP48 263 aa10.16□□□□□ -0.78
CD44-207ENST00000425428 UPK3BL2E5RIL1 263 aa10.16□□□□□ -0.78
CD44-207ENST00000425428 EIF3HO15372 352 aaKnown RBP eCLIP10.16□□□□□ -0.78
CD44-207ENST00000425428 HTRA2O43464 458 aaPredicted RBP10.16□□□□□ -0.78
CD44-207ENST00000425428 RNASEH2AO75792 299 aaKnown RBP10.16□□□□□ -0.78
CD44-207ENST00000425428 AGTP01019 485 aa10.16□□□□□ -0.78
CD44-207ENST00000425428 MMP2P08253 660 aa10.16□□□□□ -0.78
CD44-207ENST00000425428 PAMP19021 973 aa10.16□□□□□ -0.78
CD44-207ENST00000425428 OXTRP30559 389 aa10.16□□□□□ -0.78
CD44-207ENST00000425428 FAM193AP78312 1265 aa10.16□□□□□ -0.78
CD44-207ENST00000425428 TRAF2Q12933 501 aa10.16□□□□□ -0.78
CD44-207ENST00000425428 GALNT3Q14435 633 aa10.16□□□□□ -0.78
CD44-207ENST00000425428 SPARCL1Q14515 664 aa10.16□□□□□ -0.78
CD44-207ENST00000425428 SLMAPQ14BN4 828 aa10.16□□□□□ -0.78
CD44-207ENST00000425428 ERCC6LQ2NKX8 1250 aa10.16□□□□□ -0.78
CD44-207ENST00000425428 KDELC1Q6UW63 502 aa10.16□□□□□ -0.78
CD44-207ENST00000425428 HDDC3Q8N4P3 179 aa10.16□□□□□ -0.78
CD44-207ENST00000425428 ZCCHC9Q8N567 271 aaKnown RBP10.16□□□□□ -0.78
CD44-207ENST00000425428 NAT8LQ8N9F0 302 aa10.16□□□□□ -0.78
CD44-207ENST00000425428 OR52K1Q8NGK4 314 aa10.16□□□□□ -0.78
CD44-207ENST00000425428 EZH1Q92800 747 aaPredicted RBP10.16□□□□□ -0.78
CD44-207ENST00000425428 LRRC39Q96DD0 335 aa10.16□□□□□ -0.78
CD44-207ENST00000425428 SPACA7Q96KW9 195 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms