RNA–Protein interactions for RNA: ENST00000417040.1

UBR4-205, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 5

Gene UBR4, Length 6,175 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-205ENST00000417040 SLC25A24Q6NUK1 477 aa12.12□□□□□ -0.47
UBR4-205ENST00000417040 PACS1Q6VY07 963 aa12.12□□□□□ -0.47
UBR4-205ENST00000417040 TPGS1Q6ZTW0 290 aa12.12□□□□□ -0.47
UBR4-205ENST00000417040 ARCQ7LC44 396 aa12.12□□□□□ -0.47
UBR4-205ENST00000417040 MCFD2Q8NI22 146 aa12.12□□□□□ -0.47
UBR4-205ENST00000417040 ZNF398Q8TD17 642 aa12.12□□□□□ -0.47
UBR4-205ENST00000417040 MCOLN3Q8TDD5 553 aa12.12□□□□□ -0.47
UBR4-205ENST00000417040 EBNA1BP2Q99848 306 aaKnown RBP12.12□□□□□ -0.47
UBR4-205ENST00000417040 OSBPL7Q9BZF2 842 aa12.12□□□□□ -0.47
UBR4-205ENST00000417040 A0A0J9YYE9 177 aa12.12□□□□□ -0.47
UBR4-205ENST00000417040 ZBTB14O43829 449 aa12.12□□□□□ -0.47
UBR4-205ENST00000417040 GUCY1B2O75343 617 aa12.12□□□□□ -0.47
UBR4-205ENST00000417040 OR6A2O95222 327 aa12.12□□□□□ -0.47
UBR4-205ENST00000417040 BPGMP07738 259 aa12.12□□□□□ -0.47
UBR4-205ENST00000417040 PAEPP09466 180 aa12.12□□□□□ -0.47
UBR4-205ENST00000417040 SLURP2P0DP57 97 aa12.12□□□□□ -0.47
UBR4-205ENST00000417040 VCLP18206 1134 aa12.12□□□□□ -0.47
UBR4-205ENST00000417040 RBBP4Q09028 425 aa12.12□□□□□ -0.47
UBR4-205ENST00000417040 SFSWAPQ12872 951 aaKnown RBP12.12□□□□□ -0.47
UBR4-205ENST00000417040 IKBIPQ70UQ0 350 aa12.12□□□□□ -0.47
UBR4-205ENST00000417040 ZNF438Q7Z4V0 828 aa12.12□□□□□ -0.47
UBR4-205ENST00000417040 DNAJC19Q96DA6 116 aa12.12□□□□□ -0.47
UBR4-205ENST00000417040 SLC9A7Q96T83 725 aa12.12□□□□□ -0.47
UBR4-205ENST00000417040 C3orf18Q9UK00 162 aa12.12□□□□□ -0.47
UBR4-205ENST00000417040 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.12□□□□□ -0.47
UBR4-205ENST00000417040 NPEPPSL1A6NEC2 478 aa12.11□□□□□ -0.47
UBR4-205ENST00000417040 BIRC5O15392 142 aa12.11□□□□□ -0.47
UBR4-205ENST00000417040 TRMUO75648 421 aaKnown RBP12.11□□□□□ -0.47
UBR4-205ENST00000417040 PSMA3P25788 255 aa12.11□□□□□ -0.47
UBR4-205ENST00000417040 AQP1P29972 269 aa12.11□□□□□ -0.47
UBR4-205ENST00000417040 TTKP33981 857 aa12.11□□□□□ -0.47
UBR4-205ENST00000417040 GJA8P48165 433 aa12.11□□□□□ -0.47
UBR4-205ENST00000417040 RXRGP48443 463 aa12.11□□□□□ -0.47
UBR4-205ENST00000417040 HSPA14Q0VDF9 509 aa12.11□□□□□ -0.47
UBR4-205ENST00000417040 IL18Q14116 193 aa12.11□□□□□ -0.47
UBR4-205ENST00000417040 CNSTQ6PJW8 725 aa12.11□□□□□ -0.47
UBR4-205ENST00000417040 BRSK2Q8IWQ3 736 aa12.11□□□□□ -0.47
UBR4-205ENST00000417040 STAG3L4Q8TBR4 150 aa12.11□□□□□ -0.47
UBR4-205ENST00000417040 MYLPFQ96A32 169 aa12.11□□□□□ -0.47
UBR4-205ENST00000417040 INPP4AQ96PE3 977 aaPredicted RBP12.11□□□□□ -0.47
UBR4-205ENST00000417040 HES2Q9Y543 173 aa12.11□□□□□ -0.47
UBR4-205ENST00000417040 H0Y858 1186 aa12.11□□□□□ -0.47
UBR4-205ENST00000417040 HDAC3O15379 428 aa12.11□□□□□ -0.47
UBR4-205ENST00000417040 NOS1APO75052 506 aaPredicted RBP12.11□□□□□ -0.47
UBR4-205ENST00000417040 CCNB1P14635 433 aa12.11□□□□□ -0.47
UBR4-205ENST00000417040 NCK1P16333 377 aa12.11□□□□□ -0.47
UBR4-205ENST00000417040 GTF2E2P29084 291 aaKnown RBP12.11□□□□□ -0.47
UBR4-205ENST00000417040 ZNF143P52747 638 aaPredicted RBP12.11□□□□□ -0.47
UBR4-205ENST00000417040 ACSM2AQ08AH3 577 aa12.11□□□□□ -0.47
UBR4-205ENST00000417040 VPS72Q15906 364 aa12.11□□□□□ -0.47
UBR4-205ENST00000417040 ACSM2BQ68CK6 577 aa12.11□□□□□ -0.47
UBR4-205ENST00000417040 NEK5Q6P3R8 708 aa12.11□□□□□ -0.47
UBR4-205ENST00000417040 KLHL24Q6TFL4 600 aa12.11□□□□□ -0.47
UBR4-205ENST00000417040 C12orf56Q8IXR9 622 aa12.11□□□□□ -0.47
UBR4-205ENST00000417040 ASB2Q96Q27 587 aa12.11□□□□□ -0.47
UBR4-205ENST00000417040 ZNF221Q9UK13 617 aa12.11□□□□□ -0.47
UBR4-205ENST00000417040 ERGIC3Q9Y282 383 aa12.11□□□□□ -0.47
UBR4-205ENST00000417040 OR10H3O60404 316 aa12.11□□□□□ -0.47
UBR4-205ENST00000417040 DPEP1P16444 411 aa12.11□□□□□ -0.47
UBR4-205ENST00000417040 SIM2Q14190 667 aaPredicted RBP12.11□□□□□ -0.47
UBR4-205ENST00000417040 TIMM50Q3ZCQ8 353 aa12.11□□□□□ -0.47
UBR4-205ENST00000417040 LIN52Q52LA3 116 aa12.11□□□□□ -0.47
UBR4-205ENST00000417040 RASSF6Q6ZTQ3 369 aa12.11□□□□□ -0.47
UBR4-205ENST00000417040 KBTBD8Q8NFY9 601 aa12.11□□□□□ -0.47
UBR4-205ENST00000417040 OR4A15Q8NGL6 344 aa12.11□□□□□ -0.47
UBR4-205ENST00000417040 PIGKQ92643 395 aa12.11□□□□□ -0.47
UBR4-205ENST00000417040 NELL1Q92832 810 aa12.11□□□□□ -0.47
UBR4-205ENST00000417040 AKT1S1Q96B36 256 aa12.11□□□□□ -0.47
UBR4-205ENST00000417040 ZDHHC15Q96MV8 337 aa12.11□□□□□ -0.47
UBR4-205ENST00000417040 RHOBTB2Q9BYZ6 727 aa12.11□□□□□ -0.47
UBR4-205ENST00000417040 ALG2Q9H553 416 aa12.11□□□□□ -0.47
UBR4-205ENST00000417040 AHSPQ9NZD4 102 aa12.11□□□□□ -0.47
UBR4-205ENST00000417040 MBD2Q9UBB5 411 aa12.11□□□□□ -0.47
UBR4-205ENST00000417040 SRRM3A6NNA2 597 aaPredicted RBP12.11□□□□□ -0.47
UBR4-205ENST00000417040 ERBB2P04626 1255 aa12.11□□□□□ -0.47
UBR4-205ENST00000417040 PRKAR1AP10644 381 aa12.11□□□□□ -0.47
UBR4-205ENST00000417040 TKTP29401 623 aaKnown RBP12.11□□□□□ -0.47
UBR4-205ENST00000417040 ZFP69Q49AA0 526 aa12.11□□□□□ -0.47
UBR4-205ENST00000417040 REP15Q6BDI9 236 aa12.11□□□□□ -0.47
UBR4-205ENST00000417040 PMF1Q6P1K2 205 aa12.11□□□□□ -0.47
UBR4-205ENST00000417040 IQCKQ8N0W5 287 aa12.11□□□□□ -0.47
UBR4-205ENST00000417040 FBXL16Q8N461 479 aa12.11□□□□□ -0.47
UBR4-205ENST00000417040 EXOC2Q96KP1 924 aa12.11□□□□□ -0.47
UBR4-205ENST00000417040 ACSS3Q9H6R3 686 aa12.11□□□□□ -0.47
UBR4-205ENST00000417040 NKIRAS2Q9NYR9 191 aa12.11□□□□□ -0.47
UBR4-205ENST00000417040 ITSN1Q15811 1721 aa12.11□□□□□ -0.47
UBR4-205ENST00000417040 GJB1P08034 283 aa12.11□□□□□ -0.47
UBR4-205ENST00000417040 CCNFP41002 786 aa12.11□□□□□ -0.47
UBR4-205ENST00000417040 RHAGQ02094 409 aa12.11□□□□□ -0.47
UBR4-205ENST00000417040 KLF10Q13118 480 aa12.11□□□□□ -0.47
UBR4-205ENST00000417040 NBPF12Q5TAG4 269 aaPredicted RBP12.11□□□□□ -0.47
UBR4-205ENST00000417040 JOSD2Q8TAC2 188 aa12.11□□□□□ -0.47
UBR4-205ENST00000417040 MRPL57Q9BQC6 102 aaKnown RBP12.11□□□□□ -0.47
UBR4-205ENST00000417040 UBA2Q9UBT2 640 aaPredicted RBP12.11□□□□□ -0.47
UBR4-205ENST00000417040 FADS3Q9Y5Q0 445 aa12.11□□□□□ -0.47
UBR4-205ENST00000417040 RBAK-RBAKDNI3L0D1 243 aa12.1□□□□□ -0.47
UBR4-205ENST00000417040 TCEA3O75764 348 aa12.1□□□□□ -0.47
UBR4-205ENST00000417040 CREB1P16220 341 aa12.1□□□□□ -0.47
UBR4-205ENST00000417040 CTPS1P17812 591 aa12.1□□□□□ -0.47
UBR4-205ENST00000417040 TRAP1Q12931 704 aaKnown RBP12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms