RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 SDCCAG8Q86SQ7 713 aaPredicted RBP9.95□□□□□ -0.82
SS18-203ENST00000415083 OR10T2Q8NGX3 314 aa9.95□□□□□ -0.82
SS18-203ENST00000415083 PDCD6IPQ8WUM4 868 aaKnown RBP9.95□□□□□ -0.82
SS18-203ENST00000415083 NUDT5Q9UKK9 219 aa9.95□□□□□ -0.82
SS18-203ENST00000415083 ACOT9Q9Y305 439 aa9.95□□□□□ -0.82
SS18-203ENST00000415083 PLXNA3P51805 1871 aa9.95□□□□□ -0.82
SS18-203ENST00000415083 RRN3P2A6NIE6 340 aa9.95□□□□□ -0.82
SS18-203ENST00000415083 NCAM2O15394 837 aa9.95□□□□□ -0.82
SS18-203ENST00000415083 NPHS1O60500 1241 aa9.95□□□□□ -0.82
SS18-203ENST00000415083 ARSDP51689 593 aa9.95□□□□□ -0.82
SS18-203ENST00000415083 EMP3P54852 163 aa9.95□□□□□ -0.82
SS18-203ENST00000415083 DNAJB13P59910 316 aa9.95□□□□□ -0.82
SS18-203ENST00000415083 PSME3P61289 254 aa9.95□□□□□ -0.82
SS18-203ENST00000415083 REP15Q6BDI9 236 aa9.95□□□□□ -0.82
SS18-203ENST00000415083 CLEC6AQ6EIG7 209 aa9.95□□□□□ -0.82
SS18-203ENST00000415083 DCLRE1AQ6PJP8 1040 aa9.95□□□□□ -0.82
SS18-203ENST00000415083 CARM1Q86X55 608 aa9.95□□□□□ -0.82
SS18-203ENST00000415083 AHI1Q8N157 1196 aa9.95□□□□□ -0.82
SS18-203ENST00000415083 ADCY4Q8NFM4 1077 aa9.95□□□□□ -0.82
SS18-203ENST00000415083 MYLPFQ96A32 169 aa9.95□□□□□ -0.82
SS18-203ENST00000415083 UBXN10Q96LJ8 280 aa9.95□□□□□ -0.82
SS18-203ENST00000415083 ZNF597Q96LX8 424 aa9.95□□□□□ -0.82
SS18-203ENST00000415083 PHF12Q96QT6 1004 aa9.95□□□□□ -0.82
SS18-203ENST00000415083 GAD1Q99259 594 aa9.95□□□□□ -0.82
SS18-203ENST00000415083 PRPF18Q99633 342 aaKnown RBP9.95□□□□□ -0.82
SS18-203ENST00000415083 SLC52A3Q9NQ40 469 aa9.95□□□□□ -0.82
SS18-203ENST00000415083 OLAHQ9NV23 265 aa9.95□□□□□ -0.82
SS18-203ENST00000415083 FIS1Q9Y3D6 152 aa9.95□□□□□ -0.82
SS18-203ENST00000415083 CROCCQ5TZA2 2017 aa9.95□□□□□ -0.82
SS18-203ENST00000415083 PLXNA4Q9HCM2 1894 aa9.94□□□□□ -0.82
SS18-203ENST00000415083 TCRBV3S1A0A5B6 114 aa9.94□□□□□ -0.82
SS18-203ENST00000415083 OR51F1A6NGY5 319 aa9.94□□□□□ -0.82
SS18-203ENST00000415083 MT-CO1P00395 513 aa9.94□□□□□ -0.82
SS18-203ENST00000415083 ITGB1P05556 798 aa9.94□□□□□ -0.82
SS18-203ENST00000415083 ZNF865P0CJ78 1059 aaPredicted RBP9.94□□□□□ -0.82
SS18-203ENST00000415083 MTX3Q5HYI7 312 aa9.94□□□□□ -0.82
SS18-203ENST00000415083 FAM171BQ6P995 826 aa9.94□□□□□ -0.82
SS18-203ENST00000415083 ARHGAP22Q7Z5H3 698 aa9.94□□□□□ -0.82
SS18-203ENST00000415083 SCD5Q86SK9 330 aa9.94□□□□□ -0.82
SS18-203ENST00000415083 PIM3Q86V86 326 aa9.94□□□□□ -0.82
SS18-203ENST00000415083 TMEM126BQ8IUX1 230 aa9.94□□□□□ -0.82
SS18-203ENST00000415083 ZNF683Q8IZ20 524 aa9.94□□□□□ -0.82
SS18-203ENST00000415083 ARHGAP18Q8N392 663 aa9.94□□□□□ -0.82
SS18-203ENST00000415083 CASP10Q92851 521 aa9.94□□□□□ -0.82
SS18-203ENST00000415083 NSMCE3Q96MG7 304 aa9.94□□□□□ -0.82
SS18-203ENST00000415083 UHRF1Q96T88 793 aaPredicted RBP9.94□□□□□ -0.82
SS18-203ENST00000415083 TRIM8Q9BZR9 551 aa9.94□□□□□ -0.82
SS18-203ENST00000415083 MARCH4Q9P2E8 410 aaPredicted RBP9.94□□□□□ -0.82
SS18-203ENST00000415083 MAP10Q9P2G4 905 aa9.94□□□□□ -0.82
SS18-203ENST00000415083 KCTD3Q9Y597 815 aa9.94□□□□□ -0.82
SS18-203ENST00000415083 ANKRD36A6QL64 1941 aa9.94□□□□□ -0.82
SS18-203ENST00000415083 ZFC3H1O60293 1989 aaKnown RBP9.94□□□□□ -0.82
SS18-203ENST00000415083 MYADML2A6NDP7 307 aa9.94□□□□□ -0.82
SS18-203ENST00000415083 TMX2-CTNND1H3BSU7 103 aa9.94□□□□□ -0.82
SS18-203ENST00000415083 COL6A2P12110 1019 aa9.94□□□□□ -0.82
SS18-203ENST00000415083 BDNFP23560 247 aa9.94□□□□□ -0.82
SS18-203ENST00000415083 AXLP30530 894 aa9.94□□□□□ -0.82
SS18-203ENST00000415083 PRKAA2P54646 552 aa9.94□□□□□ -0.82
SS18-203ENST00000415083 FOXA1P55317 472 aa9.94□□□□□ -0.82
SS18-203ENST00000415083 IKBKEQ14164 716 aa9.94□□□□□ -0.82
SS18-203ENST00000415083 CSHL1Q14406 222 aa9.94□□□□□ -0.82
SS18-203ENST00000415083 SLC14A2Q15849 920 aa9.94□□□□□ -0.82
SS18-203ENST00000415083 CCL14Q16627 93 aa9.94□□□□□ -0.82
SS18-203ENST00000415083 PAN2Q504Q3 1202 aaKnown RBP9.94□□□□□ -0.82
SS18-203ENST00000415083 ZNF470Q6ECI4 717 aa9.94□□□□□ -0.82
SS18-203ENST00000415083 AGMOQ6ZNB7 445 aa9.94□□□□□ -0.82
SS18-203ENST00000415083 LARP4Q71RC2 724 aaKnown RBP eCLIP9.94□□□□□ -0.82
SS18-203ENST00000415083 EPHX4Q8IUS5 362 aa9.94□□□□□ -0.82
SS18-203ENST00000415083 PHYKPLQ8IUZ5 450 aa9.94□□□□□ -0.82
SS18-203ENST00000415083 LPGAT1Q92604 370 aa9.94□□□□□ -0.82
SS18-203ENST00000415083 PTERQ96BW5 349 aa9.94□□□□□ -0.82
SS18-203ENST00000415083 DGCR14Q96DF8 476 aaKnown RBP9.94□□□□□ -0.82
SS18-203ENST00000415083 ASB9Q96DX5 294 aa9.94□□□□□ -0.82
SS18-203ENST00000415083 ELMO2Q96JJ3 720 aa9.94□□□□□ -0.82
SS18-203ENST00000415083 RPL10LQ96L21 214 aaKnown RBP9.94□□□□□ -0.82
SS18-203ENST00000415083 NMUR1Q9HB89 426 aa9.94□□□□□ -0.82
SS18-203ENST00000415083 CHST12Q9NRB3 414 aa9.94□□□□□ -0.82
SS18-203ENST00000415083 MPP6Q9NZW5 540 aa9.94□□□□□ -0.82
SS18-203ENST00000415083 TMEM181Q9P2C4 612 aa9.94□□□□□ -0.82
SS18-203ENST00000415083 VTI1BQ9UEU0 232 aa9.94□□□□□ -0.82
SS18-203ENST00000415083 TLK1Q9UKI8 766 aa9.94□□□□□ -0.82
SS18-203ENST00000415083 IKZF3Q9UKT9 509 aa9.94□□□□□ -0.82
SS18-203ENST00000415083 SMIM31A0A1B0GVY4 71 aa9.94□□□□□ -0.82
SS18-203ENST00000415083 CCDC160A6NGH7 325 aa9.94□□□□□ -0.82
SS18-203ENST00000415083 CASTOR2A6NHX0 329 aa9.94□□□□□ -0.82
SS18-203ENST00000415083 SOCS2O14508 198 aa9.94□□□□□ -0.82
SS18-203ENST00000415083 PMPCBO75439 489 aa9.94□□□□□ -0.82
SS18-203ENST00000415083 APOA4P06727 396 aa9.94□□□□□ -0.82
SS18-203ENST00000415083 UGT1A6P19224 532 aa9.94□□□□□ -0.82
SS18-203ENST00000415083 ATP6V1B2P21281 511 aa9.94□□□□□ -0.82
SS18-203ENST00000415083 CCNCP24863 283 aa9.94□□□□□ -0.82
SS18-203ENST00000415083 RPL5P46777 297 aaKnown RBP9.94□□□□□ -0.82
SS18-203ENST00000415083 APLP1P51693 650 aa9.94□□□□□ -0.82
SS18-203ENST00000415083 PTPRCAPQ14761 206 aa9.94□□□□□ -0.82
SS18-203ENST00000415083 TBC1D25Q3MII6 688 aa9.94□□□□□ -0.82
SS18-203ENST00000415083 IL31Q6EBC2 164 aa9.94□□□□□ -0.82
SS18-203ENST00000415083 NAPEPLDQ6IQ20 393 aa9.94□□□□□ -0.82
SS18-203ENST00000415083 CPNE9Q8IYJ1 553 aa9.94□□□□□ -0.82
SS18-203ENST00000415083 RANBP9Q96S59 729 aa9.94□□□□□ -0.82
SS18-203ENST00000415083 SIK2Q9H0K1 926 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms