RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 TRAF2Q12933 501 aa13.49□□□□□ -0.25
VPS28-202ENST00000377348 IHHQ14623 411 aa13.49□□□□□ -0.25
VPS28-202ENST00000377348 GSE1Q14687 1217 aa13.49□□□□□ -0.25
VPS28-202ENST00000377348 GRM3Q14832 879 aa13.49□□□□□ -0.25
VPS28-202ENST00000377348 ZNF284Q2VY69 593 aa13.49□□□□□ -0.25
VPS28-202ENST00000377348 CFAP58Q5T655 872 aa13.49□□□□□ -0.25
VPS28-202ENST00000377348 BBS12Q6ZW61 710 aa13.49□□□□□ -0.25
VPS28-202ENST00000377348 PRPF39Q86UA1 669 aaKnown RBP13.49□□□□□ -0.25
VPS28-202ENST00000377348 ZC3H18Q86VM9 953 aaKnown RBP13.49□□□□□ -0.25
VPS28-202ENST00000377348 HORMAD1Q86X24 394 aa13.49□□□□□ -0.25
VPS28-202ENST00000377348 UBL4BQ8N7F7 174 aa13.49□□□□□ -0.25
VPS28-202ENST00000377348 OR2I1PQ8NGU4 316 aa13.49□□□□□ -0.25
VPS28-202ENST00000377348 PDCD6IPQ8WUM4 868 aaKnown RBP13.49□□□□□ -0.25
VPS28-202ENST00000377348 FATE1Q969F0 183 aa13.49□□□□□ -0.25
VPS28-202ENST00000377348 RAB7BQ96AH8 199 aa13.49□□□□□ -0.25
VPS28-202ENST00000377348 HES6Q96HZ4 224 aa13.49□□□□□ -0.25
VPS28-202ENST00000377348 SERAC1Q96JX3 654 aa13.49□□□□□ -0.25
VPS28-202ENST00000377348 ZNF641Q96N77 438 aaPredicted RBP13.49□□□□□ -0.25
VPS28-202ENST00000377348 SEMA3CQ99985 751 aa13.49□□□□□ -0.25
VPS28-202ENST00000377348 GTPBP2Q9BX10 602 aaKnown RBP13.49□□□□□ -0.25
VPS28-202ENST00000377348 OSBPL8Q9BZF1 889 aa13.49□□□□□ -0.25
VPS28-202ENST00000377348 POLR1EQ9GZS1 481 aaKnown RBP13.49□□□□□ -0.25
VPS28-202ENST00000377348 FZD3Q9NPG1 666 aa13.49□□□□□ -0.25
VPS28-202ENST00000377348 DCHS1Q96JQ0 3298 aa13.49□□□□□ -0.25
VPS28-202ENST00000377348 PLXNA2O75051 1894 aa13.48□□□□□ -0.25
VPS28-202ENST00000377348 A0A1B0GVT2 93 aa13.48□□□□□ -0.25
VPS28-202ENST00000377348 IGLON5A6NGN9 336 aa13.48□□□□□ -0.25
VPS28-202ENST00000377348 MIF4GDA9UHW6 222 aaKnown RBP13.48□□□□□ -0.25
VPS28-202ENST00000377348 UPK3BL1B0FP48 263 aa13.48□□□□□ -0.25
VPS28-202ENST00000377348 UPK3BL2E5RIL1 263 aa13.48□□□□□ -0.25
VPS28-202ENST00000377348 WNT1P04628 370 aa13.48□□□□□ -0.25
VPS28-202ENST00000377348 NR2C2P49116 596 aa13.48□□□□□ -0.25
VPS28-202ENST00000377348 NIPAL4Q0D2K0 466 aa13.48□□□□□ -0.25
VPS28-202ENST00000377348 GRIK2Q13002 908 aa13.48□□□□□ -0.25
VPS28-202ENST00000377348 FGL2Q14314 439 aa13.48□□□□□ -0.25
VPS28-202ENST00000377348 PRKD1Q15139 912 aaPredicted RBP13.48□□□□□ -0.25
VPS28-202ENST00000377348 UGP2Q16851 508 aa13.48□□□□□ -0.25
VPS28-202ENST00000377348 TMEM259Q4ZIN3 620 aa13.48□□□□□ -0.25
VPS28-202ENST00000377348 CCDC181Q5TID7 509 aa13.48□□□□□ -0.25
VPS28-202ENST00000377348 NEK5Q6P3R8 708 aa13.48□□□□□ -0.25
VPS28-202ENST00000377348 BRAT1Q6PJG6 821 aa13.48□□□□□ -0.25
VPS28-202ENST00000377348 ZNF662Q6ZS27 426 aa13.48□□□□□ -0.25
VPS28-202ENST00000377348 RABEPKQ7Z6M1 372 aa13.48□□□□□ -0.25
VPS28-202ENST00000377348 PAF1Q8N7H5 531 aa13.48□□□□□ -0.25
VPS28-202ENST00000377348 CNTD1Q8N815 330 aa13.48□□□□□ -0.25
VPS28-202ENST00000377348 P3H4Q92791 437 aa13.48□□□□□ -0.25
VPS28-202ENST00000377348 ECHDC3Q96DC8 303 aa13.48□□□□□ -0.25
VPS28-202ENST00000377348 FEM1CQ96JP0 617 aa13.48□□□□□ -0.25
VPS28-202ENST00000377348 IL12RB2Q99665 862 aa13.48□□□□□ -0.25
VPS28-202ENST00000377348 FAM118BQ9BPY3 351 aa13.48□□□□□ -0.25
VPS28-202ENST00000377348 WRAP53Q9BUR4 548 aaKnown RBP13.48□□□□□ -0.25
VPS28-202ENST00000377348 C10orf88Q9H8K7 445 aa13.48□□□□□ -0.25
VPS28-202ENST00000377348 PCDH12Q9NPG4 1184 aa13.48□□□□□ -0.25
VPS28-202ENST00000377348 AASDHPPTQ9NRN7 309 aa13.48□□□□□ -0.25
VPS28-202ENST00000377348 CACNA1EQ15878 2313 aa13.48□□□□□ -0.25
VPS28-202ENST00000377348 KNL1Q8NG31 2342 aa13.48□□□□□ -0.25
VPS28-202ENST00000377348 DOCK9Q9BZ29 2069 aa13.48□□□□□ -0.25
VPS28-202ENST00000377348 PCDH15Q96QU1 1955 aa13.47□□□□□ -0.25
VPS28-202ENST00000377348 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP13.47□□□□□ -0.25
VPS28-202ENST00000377348 C4orf47A7E2U8 309 aa13.47□□□□□ -0.25
VPS28-202ENST00000377348 PRR5-ARHGAP8B1AHC4 643 aa13.47□□□□□ -0.25
VPS28-202ENST00000377348 APOC4-APOC2K7ER74 178 aa13.47□□□□□ -0.25
VPS28-202ENST00000377348 ARHGAP33O14559 1287 aa13.47□□□□□ -0.25
VPS28-202ENST00000377348 CDX4O14627 284 aaPredicted RBP13.47□□□□□ -0.25
VPS28-202ENST00000377348 HTRA2O43464 458 aaPredicted RBP13.47□□□□□ -0.25
VPS28-202ENST00000377348 TSPAN6O43657 245 aa13.47□□□□□ -0.25
VPS28-202ENST00000377348 FOXD2O60548 495 aaPredicted RBP13.47□□□□□ -0.25
VPS28-202ENST00000377348 MMP20O60882 483 aa13.47□□□□□ -0.25
VPS28-202ENST00000377348 APOC2P02655 101 aa13.47□□□□□ -0.25
VPS28-202ENST00000377348 PTPN7P35236 360 aa13.47□□□□□ -0.25
VPS28-202ENST00000377348 AFF3P51826 1226 aaKnown RBP13.47□□□□□ -0.25
VPS28-202ENST00000377348 RPS21P63220 83 aaKnown RBP13.47□□□□□ -0.25
VPS28-202ENST00000377348 RACK1P63244 317 aaKnown RBP13.47□□□□□ -0.25
VPS28-202ENST00000377348 IFI35P80217 286 aaPredicted RBP13.47□□□□□ -0.25
VPS28-202ENST00000377348 RSPO4Q2I0M5 234 aaPredicted RBP13.47□□□□□ -0.25
VPS28-202ENST00000377348 SETMARQ53H47 684 aaPredicted RBP13.47□□□□□ -0.25
VPS28-202ENST00000377348 STPG1Q5TH74 334 aa13.47□□□□□ -0.25
VPS28-202ENST00000377348 ALG1LQ6GMV1 187 aa13.47□□□□□ -0.25
VPS28-202ENST00000377348 NAPEPLDQ6IQ20 393 aa13.47□□□□□ -0.25
VPS28-202ENST00000377348 KIAA1161Q6NSJ0 714 aa13.47□□□□□ -0.25
VPS28-202ENST00000377348 BZW1Q7L1Q6 419 aaKnown RBP13.47□□□□□ -0.25
VPS28-202ENST00000377348 ADAT2Q7Z6V5 191 aaKnown RBP13.47□□□□□ -0.25
VPS28-202ENST00000377348 ARRDC2Q8TBH0 407 aa13.47□□□□□ -0.25
VPS28-202ENST00000377348 HCAR2Q8TDS4 363 aa13.47□□□□□ -0.25
VPS28-202ENST00000377348 TFB1MQ8WVM0 346 aaKnown RBP13.47□□□□□ -0.25
VPS28-202ENST00000377348 AGAP3Q96P47 875 aa13.47□□□□□ -0.25
VPS28-202ENST00000377348 ATP8A1Q9Y2Q0 1164 aa13.47□□□□□ -0.25
VPS28-202ENST00000377348 PCDHB9Q9Y5E1 797 aa13.47□□□□□ -0.25
VPS28-202ENST00000377348 ANKRD36A6QL64 1941 aa13.47□□□□□ -0.25
VPS28-202ENST00000377348 ADAMTS9Q9P2N4 1935 aa13.47□□□□□ -0.25
VPS28-202ENST00000377348 A0A1W2PR77 199 aa13.46□□□□□ -0.25
VPS28-202ENST00000377348 A8MX80 341 aa13.46□□□□□ -0.25
VPS28-202ENST00000377348 H0Y8X5 98 aa13.46□□□□□ -0.25
VPS28-202ENST00000377348 KCNK3O14649 394 aa13.46□□□□□ -0.25
VPS28-202ENST00000377348 RIOK3O14730 519 aaKnown RBP13.46□□□□□ -0.25
VPS28-202ENST00000377348 RAD51BO15315 384 aa13.46□□□□□ -0.25
VPS28-202ENST00000377348 SOCS5O75159 536 aa13.46□□□□□ -0.25
VPS28-202ENST00000377348 PAK4O96013 591 aaPredicted RBP13.46□□□□□ -0.25
VPS28-202ENST00000377348 PTPN3P26045 913 aa13.46□□□□□ -0.25
VPS28-202ENST00000377348 CD38P28907 300 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms