RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 ZFP1Q6P2D0 407 aa13.79□□□□□ -0.2
COL4A1-201ENST00000375820 FBXW8Q8N3Y1 598 aa13.79□□□□□ -0.2
COL4A1-201ENST00000375820 TRIM63Q969Q1 353 aa13.79□□□□□ -0.2
COL4A1-201ENST00000375820 SKA1Q96BD8 255 aa13.79□□□□□ -0.2
COL4A1-201ENST00000375820 MCMBPQ9BTE3 642 aa13.79□□□□□ -0.2
COL4A1-201ENST00000375820 CNOT6Q9ULM6 557 aaKnown RBP13.79□□□□□ -0.2
COL4A1-201ENST00000375820 NPEPPSL1A6NEC2 478 aa13.79□□□□□ -0.2
COL4A1-201ENST00000375820 WNT10BO00744 389 aa13.79□□□□□ -0.2
COL4A1-201ENST00000375820 MGRN1O60291 552 aa13.79□□□□□ -0.2
COL4A1-201ENST00000375820 TMCC2O75069 709 aa13.79□□□□□ -0.2
COL4A1-201ENST00000375820 ENTPD5O75356 428 aa13.79□□□□□ -0.2
COL4A1-201ENST00000375820 PURAQ00577 322 aaKnown RBP13.79□□□□□ -0.2
COL4A1-201ENST00000375820 ARHGAP22Q7Z5H3 698 aa13.79□□□□□ -0.2
COL4A1-201ENST00000375820 STX12Q86Y82 276 aa13.79□□□□□ -0.2
COL4A1-201ENST00000375820 LZTR1Q8N653 840 aa13.79□□□□□ -0.2
COL4A1-201ENST00000375820 CERS2Q96G23 380 aa13.79□□□□□ -0.2
COL4A1-201ENST00000375820 PANX1Q96RD7 426 aa13.79□□□□□ -0.2
COL4A1-201ENST00000375820 A0A087WXM4 84 aa13.79□□□□□ -0.2
COL4A1-201ENST00000375820 SGTAO43765 313 aa13.79□□□□□ -0.2
COL4A1-201ENST00000375820 KPNA6O60684 536 aa13.79□□□□□ -0.2
COL4A1-201ENST00000375820 ITPKAP23677 461 aa13.79□□□□□ -0.2
COL4A1-201ENST00000375820 TARBP2Q15633 366 aaKnown RBP13.79□□□□□ -0.2
COL4A1-201ENST00000375820 TAB1Q15750 504 aa13.79□□□□□ -0.2
COL4A1-201ENST00000375820 ATL1Q8WXF7 558 aa13.79□□□□□ -0.2
COL4A1-201ENST00000375820 NDRG1Q92597 394 aaKnown RBP13.79□□□□□ -0.2
COL4A1-201ENST00000375820 LINGO1Q96FE5 620 aa13.79□□□□□ -0.2
COL4A1-201ENST00000375820 CHID1Q9BWS9 393 aa13.79□□□□□ -0.2
COL4A1-201ENST00000375820 IL22Q9GZX6 179 aa13.79□□□□□ -0.2
COL4A1-201ENST00000375820 CLIC5Q9NZA1 410 aa13.79□□□□□ -0.2
COL4A1-201ENST00000375820 VPS4AQ9UN37 437 aa13.79□□□□□ -0.2
COL4A1-201ENST00000375820 TFECO14948 347 aaPredicted RBP13.78□□□□□ -0.2
COL4A1-201ENST00000375820 NRP2O60462 931 aa13.78□□□□□ -0.2
COL4A1-201ENST00000375820 ERN1O75460 977 aaKnown RBP13.78□□□□□ -0.2
COL4A1-201ENST00000375820 STX11O75558 287 aa13.78□□□□□ -0.2
COL4A1-201ENST00000375820 RXRGP48443 463 aa13.78□□□□□ -0.2
COL4A1-201ENST00000375820 CHN2P52757 468 aa13.78□□□□□ -0.2
COL4A1-201ENST00000375820 TAS2R41P59536 307 aa13.78□□□□□ -0.2
COL4A1-201ENST00000375820 KCNJ2P63252 427 aa13.78□□□□□ -0.2
COL4A1-201ENST00000375820 CYP4F8P98187 520 aa13.78□□□□□ -0.2
COL4A1-201ENST00000375820 SUZ12Q15022 739 aaKnown RBP13.78□□□□□ -0.2
COL4A1-201ENST00000375820 NTRK3Q16288 839 aa13.78□□□□□ -0.2
COL4A1-201ENST00000375820 MZT2BQ6NZ67 158 aa13.78□□□□□ -0.2
COL4A1-201ENST00000375820 KYAT3Q6YP21 454 aaKnown RBP13.78□□□□□ -0.2
COL4A1-201ENST00000375820 LENG9Q96B70 501 aa13.78□□□□□ -0.2
COL4A1-201ENST00000375820 RCN3Q96D15 328 aa13.78□□□□□ -0.2
COL4A1-201ENST00000375820 SLC47A1Q96FL8 570 aa13.78□□□□□ -0.2
COL4A1-201ENST00000375820 PCDHAC2Q9Y5I4 1007 aa13.78□□□□□ -0.2
COL4A1-201ENST00000375820 TMEM119Q4V9L6 283 aa13.78□□□□□ -0.2
COL4A1-201ENST00000375820 BAP1Q92560 729 aa13.78□□□□□ -0.2
COL4A1-201ENST00000375820 COPS4Q9BT78 406 aa13.78□□□□□ -0.2
COL4A1-201ENST00000375820 IMP3Q9NV31 184 aaKnown RBP13.78□□□□□ -0.2
COL4A1-201ENST00000375820 MRPS23Q9Y3D9 190 aaKnown RBP13.78□□□□□ -0.2
COL4A1-201ENST00000375820 A0A0A0MRY4 1105 aa13.78□□□□□ -0.2
COL4A1-201ENST00000375820 ECDO95905 644 aaPredicted RBP13.78□□□□□ -0.2
COL4A1-201ENST00000375820 NPR3P17342 541 aa13.78□□□□□ -0.2
COL4A1-201ENST00000375820 CDH13P55290 713 aa13.78□□□□□ -0.2
COL4A1-201ENST00000375820 PSME3P61289 254 aa13.78□□□□□ -0.2
COL4A1-201ENST00000375820 HECTD3Q5T447 861 aa13.78□□□□□ -0.2
COL4A1-201ENST00000375820 AGAP11Q8TF27 550 aa13.78□□□□□ -0.2
COL4A1-201ENST00000375820 SPATA13Q96N96 652 aa13.78□□□□□ -0.2
COL4A1-201ENST00000375820 HMG20AQ9NP66 347 aa13.78□□□□□ -0.2
COL4A1-201ENST00000375820 ATAD3AQ9NVI7 634 aa13.78□□□□□ -0.2
COL4A1-201ENST00000375820 RRN3Q9NYV6 651 aa13.78□□□□□ -0.2
COL4A1-201ENST00000375820 SAMHD1Q9Y3Z3 626 aaKnown RBP13.78□□□□□ -0.2
COL4A1-201ENST00000375820 PSMD9O00233 223 aa13.78□□□□□ -0.2
COL4A1-201ENST00000375820 MTRF1O75570 445 aaKnown RBP13.78□□□□□ -0.2
COL4A1-201ENST00000375820 PAEPP09466 180 aa13.78□□□□□ -0.2
COL4A1-201ENST00000375820 NOS2P35228 1153 aa13.78□□□□□ -0.2
COL4A1-201ENST00000375820 USP4Q13107 963 aa13.78□□□□□ -0.2
COL4A1-201ENST00000375820 MTX3Q5HYI7 312 aa13.78□□□□□ -0.2
COL4A1-201ENST00000375820 GALNTL5Q7Z4T8 443 aa13.78□□□□□ -0.2
COL4A1-201ENST00000375820 TSPAN14Q8NG11 270 aa13.78□□□□□ -0.2
COL4A1-201ENST00000375820 AENQ8WTP8 325 aaKnown RBP13.78□□□□□ -0.2
COL4A1-201ENST00000375820 ABCB9Q9NP78 766 aa13.78□□□□□ -0.2
COL4A1-201ENST00000375820 ENOPH1Q9UHY7 261 aa13.78□□□□□ -0.2
COL4A1-201ENST00000375820 MTF2Q9Y483 593 aaPredicted RBP13.78□□□□□ -0.2
COL4A1-201ENST00000375820 C1orf167Q5SNV9 1468 aa13.78□□□□□ -0.2
COL4A1-201ENST00000375820 PXDNLA1KZ92 1463 aa13.78□□□□□ -0.2
COL4A1-201ENST00000375820 NEDD8-MDP1E9PL57 170 aa13.78□□□□□ -0.2
COL4A1-201ENST00000375820 KPNA5O15131 536 aa13.78□□□□□ -0.2
COL4A1-201ENST00000375820 LGR5O75473 907 aa13.78□□□□□ -0.2
COL4A1-201ENST00000375820 SMIM10L2AP0DMW4 78 aa13.78□□□□□ -0.2
COL4A1-201ENST00000375820 SMIM10L2BP0DMW5 78 aa13.78□□□□□ -0.2
COL4A1-201ENST00000375820 STARP49675 285 aa13.78□□□□□ -0.2
COL4A1-201ENST00000375820 PDK3Q15120 406 aa13.78□□□□□ -0.2
COL4A1-201ENST00000375820 CARTPTQ16568 116 aa13.78□□□□□ -0.2
COL4A1-201ENST00000375820 MAB21L3Q8N8X9 362 aa13.78□□□□□ -0.2
COL4A1-201ENST00000375820 ZNF563Q8TA94 476 aa13.78□□□□□ -0.2
COL4A1-201ENST00000375820 ASB7Q9H672 318 aa13.78□□□□□ -0.2
COL4A1-201ENST00000375820 BIRC5O15392 142 aa13.77□□□□□ -0.2
COL4A1-201ENST00000375820 FADS2O95864 444 aaKnown RBP13.77□□□□□ -0.2
COL4A1-201ENST00000375820 RPL22P35268 128 aaKnown RBP13.77□□□□□ -0.2
COL4A1-201ENST00000375820 SQLEQ14534 574 aa13.77□□□□□ -0.2
COL4A1-201ENST00000375820 IKBIPQ70UQ0 350 aa13.77□□□□□ -0.2
COL4A1-201ENST00000375820 ULK2Q8IYT8 1036 aa13.77□□□□□ -0.2
COL4A1-201ENST00000375820 KAT2AQ92830 837 aa13.77□□□□□ -0.2
COL4A1-201ENST00000375820 SLC38A2Q96QD8 506 aa13.77□□□□□ -0.2
COL4A1-201ENST00000375820 ASAH2Q9NR71 780 aa13.77□□□□□ -0.2
COL4A1-201ENST00000375820 TMEM216Q9P0N5 145 aa13.77□□□□□ -0.2
COL4A1-201ENST00000375820 PNPLA6Q8IY17 1366 aa13.77□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms