RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 AKAP10O43572 662 aa16.51■□□□□ 0.23
SDC4-201ENST00000372733 ATP6AP2O75787 350 aa16.51■□□□□ 0.23
SDC4-201ENST00000372733 USP17L7P0C7H9 530 aa16.51■□□□□ 0.23
SDC4-201ENST00000372733 TSPAN8P19075 237 aa16.51■□□□□ 0.23
SDC4-201ENST00000372733 UGT1A6P19224 532 aa16.51■□□□□ 0.23
SDC4-201ENST00000372733 GRIA3P42263 894 aa16.51■□□□□ 0.23
SDC4-201ENST00000372733 CD151P48509 253 aa16.51■□□□□ 0.23
SDC4-201ENST00000372733 DNAJB13P59910 316 aa16.51■□□□□ 0.23
SDC4-201ENST00000372733 TRAP1Q12931 704 aaKnown RBP16.51■□□□□ 0.23
SDC4-201ENST00000372733 SV2CQ496J9 727 aa16.51■□□□□ 0.23
SDC4-201ENST00000372733 TECRLQ5HYJ1 363 aa16.51■□□□□ 0.23
SDC4-201ENST00000372733 NHSL2Q5HYW2 709 aa16.51■□□□□ 0.23
SDC4-201ENST00000372733 WSCD1Q658N2 575 aa16.51■□□□□ 0.23
SDC4-201ENST00000372733 CLEC6AQ6EIG7 209 aa16.51■□□□□ 0.23
SDC4-201ENST00000372733 LIMS2Q7Z4I7 341 aa16.51■□□□□ 0.23
SDC4-201ENST00000372733 CANT1Q8WVQ1 401 aa16.51■□□□□ 0.23
SDC4-201ENST00000372733 LZICQ8WZA0 190 aa16.51■□□□□ 0.23
SDC4-201ENST00000372733 ATXN3LQ9H3M9 355 aa16.51■□□□□ 0.23
SDC4-201ENST00000372733 FBRSL1Q9HCM7 1045 aaKnown RBP16.51■□□□□ 0.23
SDC4-201ENST00000372733 TMEM30AQ9NV96 361 aa16.51■□□□□ 0.23
SDC4-201ENST00000372733 CACNG4Q9UBN1 327 aa16.51■□□□□ 0.23
SDC4-201ENST00000372733 CROTQ9UKG9 612 aa16.51■□□□□ 0.23
SDC4-201ENST00000372733 PPP2R3BQ9Y5P8 575 aa16.51■□□□□ 0.23
SDC4-201ENST00000372733 ZNF189O75820 626 aaPredicted RBP16.5■□□□□ 0.23
SDC4-201ENST00000372733 CPB1P15086 417 aa16.5■□□□□ 0.23
SDC4-201ENST00000372733 CHRNA4P43681 627 aa16.5■□□□□ 0.23
SDC4-201ENST00000372733 HCAR3P49019 387 aa16.5■□□□□ 0.23
SDC4-201ENST00000372733 SLC12A2P55011 1212 aa16.5■□□□□ 0.23
SDC4-201ENST00000372733 LILRA4P59901 499 aa16.5■□□□□ 0.23
SDC4-201ENST00000372733 CCNA1P78396 465 aa16.5■□□□□ 0.23
SDC4-201ENST00000372733 SEPT6Q14141 434 aa16.5■□□□□ 0.23
SDC4-201ENST00000372733 ZNF789Q5FWF6 425 aa16.5■□□□□ 0.23
SDC4-201ENST00000372733 INTS6LQ5JSJ4 861 aaKnown RBP16.5■□□□□ 0.23
SDC4-201ENST00000372733 SAMD4BQ5PRF9 694 aaKnown RBP16.5■□□□□ 0.23
SDC4-201ENST00000372733 BTBD8Q5XKL5 378 aa16.5■□□□□ 0.23
SDC4-201ENST00000372733 DENND5AQ6IQ26 1287 aa16.5■□□□□ 0.23
SDC4-201ENST00000372733 PPHLN1Q8NEY8 458 aaKnown RBP16.5■□□□□ 0.23
SDC4-201ENST00000372733 PHF21BQ96EK2 531 aa16.5■□□□□ 0.23
SDC4-201ENST00000372733 RANBP9Q96S59 729 aa16.5■□□□□ 0.23
SDC4-201ENST00000372733 OLFM1Q99784 485 aa16.5■□□□□ 0.23
SDC4-201ENST00000372733 COLEC11Q9BWP8 271 aa16.5■□□□□ 0.23
SDC4-201ENST00000372733 TKTL2Q9H0I9 626 aa16.5■□□□□ 0.23
SDC4-201ENST00000372733 CLK4Q9HAZ1 481 aaKnown RBP16.5■□□□□ 0.23
SDC4-201ENST00000372733 TMEM181Q9P2C4 612 aa16.5■□□□□ 0.23
SDC4-201ENST00000372733 EBF1Q9UH73 591 aa16.5■□□□□ 0.23
SDC4-201ENST00000372733 SQORQ9Y6N5 450 aa16.5■□□□□ 0.23
SDC4-201ENST00000372733 OTOFQ9HC10 1997 aa16.5■□□□□ 0.23
SDC4-201ENST00000372733 GPC4O75487 556 aa16.5■□□□□ 0.23
SDC4-201ENST00000372733 WARSP23381 471 aaKnown RBP16.5■□□□□ 0.23
SDC4-201ENST00000372733 DNAJB1P25685 340 aa16.5■□□□□ 0.23
SDC4-201ENST00000372733 AIF1P55008 147 aa16.5■□□□□ 0.23
SDC4-201ENST00000372733 CTBSQ01459 385 aa16.5■□□□□ 0.23
SDC4-201ENST00000372733 PLOD1Q02809 727 aaPredicted RBP16.5■□□□□ 0.23
SDC4-201ENST00000372733 PRKCQQ04759 706 aa16.5■□□□□ 0.23
SDC4-201ENST00000372733 DHFR2Q86XF0 187 aa16.5■□□□□ 0.23
SDC4-201ENST00000372733 CLVS1Q8IUQ0 354 aaPredicted RBP16.5■□□□□ 0.23
SDC4-201ENST00000372733 MAML3Q96JK9 1138 aa16.5■□□□□ 0.23
SDC4-201ENST00000372733 SPON1Q9HCB6 807 aa16.5■□□□□ 0.23
SDC4-201ENST00000372733 PIN4Q9Y237 131 aaKnown RBP16.5■□□□□ 0.23
SDC4-201ENST00000372733 POLR2AP24928 1970 aaKnown RBP16.5■□□□□ 0.23
SDC4-201ENST00000372733 A0A087X1B8 175 aa16.49■□□□□ 0.23
SDC4-201ENST00000372733 ASB14A6NK59 587 aa16.49■□□□□ 0.23
SDC4-201ENST00000372733 NRP2O60462 931 aa16.49■□□□□ 0.23
SDC4-201ENST00000372733 PNPLA4P41247 253 aa16.49■□□□□ 0.23
SDC4-201ENST00000372733 ZNF786Q8N393 782 aa16.49■□□□□ 0.23
SDC4-201ENST00000372733 HM13Q8TCT9 377 aa16.49■□□□□ 0.23
SDC4-201ENST00000372733 EFHD1Q9BUP0 239 aa16.49■□□□□ 0.23
SDC4-201ENST00000372733 IL1RL2Q9HB29 575 aa16.49■□□□□ 0.23
SDC4-201ENST00000372733 GPRC5DQ9NZD1 345 aa16.49■□□□□ 0.23
SDC4-201ENST00000372733 RGS17Q9UGC6 210 aaPredicted RBP16.49■□□□□ 0.23
SDC4-201ENST00000372733 FBXO5Q9UKT4 447 aa16.49■□□□□ 0.23
SDC4-201ENST00000372733 FAF1Q9UNN5 650 aaPredicted RBP16.49■□□□□ 0.23
SDC4-201ENST00000372733 TCAF1Q9Y4C2 921 aa16.49■□□□□ 0.23
SDC4-201ENST00000372733 FAM149AA5PLN7 773 aa16.49■□□□□ 0.23
SDC4-201ENST00000372733 FAM155AB1AL88 458 aaPredicted RBP16.49■□□□□ 0.23
SDC4-201ENST00000372733 TMX2-CTNND1H3BSU7 103 aa16.49■□□□□ 0.23
SDC4-201ENST00000372733 ENTPD1P49961 510 aa16.49■□□□□ 0.23
SDC4-201ENST00000372733 NME5P56597 212 aa16.49■□□□□ 0.23
SDC4-201ENST00000372733 TUBA4AP68366 448 aa16.49■□□□□ 0.23
SDC4-201ENST00000372733 PFKPQ01813 784 aa16.49■□□□□ 0.23
SDC4-201ENST00000372733 ARL13BQ3SXY8 428 aa16.49■□□□□ 0.23
SDC4-201ENST00000372733 NOMO2Q5JPE7 1267 aa16.49■□□□□ 0.23
SDC4-201ENST00000372733 RWDD4Q6NW29 188 aaKnown RBP16.49■□□□□ 0.23
SDC4-201ENST00000372733 CYHR1Q6ZMK1 362 aa16.49■□□□□ 0.23
SDC4-201ENST00000372733 TRIM74Q86UV6 250 aa16.49■□□□□ 0.23
SDC4-201ENST00000372733 TRIM73Q86UV7 250 aa16.49■□□□□ 0.23
SDC4-201ENST00000372733 CPNE9Q8IYJ1 553 aa16.49■□□□□ 0.23
SDC4-201ENST00000372733 CBR4Q8N4T8 237 aa16.49■□□□□ 0.23
SDC4-201ENST00000372733 ANKFN1Q8N957 763 aa16.49■□□□□ 0.23
SDC4-201ENST00000372733 C2CD4AQ8NCU7 369 aaPredicted RBP16.49■□□□□ 0.23
SDC4-201ENST00000372733 TFAP2CQ92754 450 aa16.49■□□□□ 0.23
SDC4-201ENST00000372733 DUS3LQ96G46 650 aaKnown RBP16.49■□□□□ 0.23
SDC4-201ENST00000372733 LRCH3Q96II8 777 aa16.49■□□□□ 0.23
SDC4-201ENST00000372733 FAR2Q96K12 515 aa16.49■□□□□ 0.23
SDC4-201ENST00000372733 SMOQ99835 787 aa16.49■□□□□ 0.23
SDC4-201ENST00000372733 DCUN1D5Q9BTE7 237 aa16.49■□□□□ 0.23
SDC4-201ENST00000372733 SLC25A23Q9BV35 468 aa16.49■□□□□ 0.23
SDC4-201ENST00000372733 CRTAC1Q9NQ79 661 aa16.49■□□□□ 0.23
SDC4-201ENST00000372733 SMOXQ9NWM0 555 aa16.49■□□□□ 0.23
SDC4-201ENST00000372733 TPST1O60507 370 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms