RNA–Protein interactions for RNA: ENST00000368440.4

SMPDL3A-201, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPDL3A, Length 1,851 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-201ENST00000368440 GRM3Q14832 879 aa15.22■□□□□ 0.03
SMPDL3A-201ENST00000368440 NOMO1Q15155 1222 aa15.22■□□□□ 0.03
SMPDL3A-201ENST00000368440 TRIM61Q5EBN2 209 aa15.22■□□□□ 0.03
SMPDL3A-201ENST00000368440 SEL1L3Q68CR1 1132 aa15.22■□□□□ 0.03
SMPDL3A-201ENST00000368440 ALG1LQ6GMV1 187 aa15.22■□□□□ 0.03
SMPDL3A-201ENST00000368440 LAYNQ6UX15 382 aa15.22■□□□□ 0.03
SMPDL3A-201ENST00000368440 TTC7BQ86TV6 843 aa15.22■□□□□ 0.03
SMPDL3A-201ENST00000368440 TRIM69Q86WT6 500 aa15.22■□□□□ 0.03
SMPDL3A-201ENST00000368440 ECHDC3Q96DC8 303 aa15.22■□□□□ 0.03
SMPDL3A-201ENST00000368440 ZNF641Q96N77 438 aaPredicted RBP15.22■□□□□ 0.03
SMPDL3A-201ENST00000368440 ALS2CR12Q96Q35 445 aa15.22■□□□□ 0.03
SMPDL3A-201ENST00000368440 POLR1EQ9GZS1 481 aaKnown RBP15.22■□□□□ 0.03
SMPDL3A-201ENST00000368440 C10orf88Q9H8K7 445 aa15.22■□□□□ 0.03
SMPDL3A-201ENST00000368440 EFR3BQ9Y2G0 817 aa15.22■□□□□ 0.03
SMPDL3A-201ENST00000368440 ATP8A1Q9Y2Q0 1164 aa15.22■□□□□ 0.03
SMPDL3A-201ENST00000368440 CFAP54Q96N23 3096 aa15.22■□□□□ 0.03
SMPDL3A-201ENST00000368440 FAM186AA6NE01 2351 aa15.22■□□□□ 0.03
SMPDL3A-201ENST00000368440 PI4KAP42356 2102 aa15.21■□□□□ 0.03
SMPDL3A-201ENST00000368440 RIF1Q5UIP0 2472 aaKnown RBP15.21■□□□□ 0.03
SMPDL3A-201ENST00000368440 A0A1W2PPC4 97 aa15.21■□□□□ 0.03
SMPDL3A-201ENST00000368440 WNT9AO14904 365 aa15.21■□□□□ 0.03
SMPDL3A-201ENST00000368440 AREL1O15033 823 aa15.21■□□□□ 0.03
SMPDL3A-201ENST00000368440 AP1G1O43747 822 aa15.21■□□□□ 0.03
SMPDL3A-201ENST00000368440 CFIP05156 583 aa15.21■□□□□ 0.03
SMPDL3A-201ENST00000368440 IRX4P78413 519 aa15.21■□□□□ 0.03
SMPDL3A-201ENST00000368440 OTUD4Q01804 1114 aaKnown RBP15.21■□□□□ 0.03
SMPDL3A-201ENST00000368440 CCDC15Q0P6D6 951 aa15.21■□□□□ 0.03
SMPDL3A-201ENST00000368440 ZNF569Q5MCW4 686 aa15.21■□□□□ 0.03
SMPDL3A-201ENST00000368440 CCDC181Q5TID7 509 aa15.21■□□□□ 0.03
SMPDL3A-201ENST00000368440 ARRDC2Q8TBH0 407 aa15.21■□□□□ 0.03
SMPDL3A-201ENST00000368440 ACTL9Q8TC94 416 aa15.21■□□□□ 0.03
SMPDL3A-201ENST00000368440 TFB1MQ8WVM0 346 aaKnown RBP15.21■□□□□ 0.03
SMPDL3A-201ENST00000368440 SLC6A18Q96N87 628 aa15.21■□□□□ 0.03
SMPDL3A-201ENST00000368440 WDR24Q96S15 920 aa15.21■□□□□ 0.03
SMPDL3A-201ENST00000368440 TM9SF3Q9HD45 589 aa15.21■□□□□ 0.03
SMPDL3A-201ENST00000368440 GVINP1Q7Z2Y8 2422 aa15.21■□□□□ 0.02
SMPDL3A-201ENST00000368440 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP15.2■□□□□ 0.02
SMPDL3A-201ENST00000368440 TCRBV7S2A1N4TA0A589 114 aa15.2■□□□□ 0.02
SMPDL3A-201ENST00000368440 KIF5CO60282 957 aa15.2■□□□□ 0.02
SMPDL3A-201ENST00000368440 GDF9O60383 454 aa15.2■□□□□ 0.02
SMPDL3A-201ENST00000368440 PRLRP16471 622 aa15.2■□□□□ 0.02
SMPDL3A-201ENST00000368440 HOXD12P35452 270 aa15.2■□□□□ 0.02
SMPDL3A-201ENST00000368440 MAPK8P45983 427 aa15.2■□□□□ 0.02
SMPDL3A-201ENST00000368440 ETF1P62495 437 aaKnown RBP15.2■□□□□ 0.02
SMPDL3A-201ENST00000368440 UGP2Q16851 508 aa15.2■□□□□ 0.02
SMPDL3A-201ENST00000368440 DUOXA1Q1HG43 343 aa15.2■□□□□ 0.02
SMPDL3A-201ENST00000368440 ZNF284Q2VY69 593 aa15.2■□□□□ 0.02
SMPDL3A-201ENST00000368440 CFAP58Q5T655 872 aa15.2■□□□□ 0.02
SMPDL3A-201ENST00000368440 SLC23A3Q6PIS1 610 aa15.2■□□□□ 0.02
SMPDL3A-201ENST00000368440 BZW1Q7L1Q6 419 aaKnown RBP15.2■□□□□ 0.02
SMPDL3A-201ENST00000368440 RAB7BQ96AH8 199 aa15.2■□□□□ 0.02
SMPDL3A-201ENST00000368440 QKIQ96PU8 341 aaKnown RBP eCLIP15.2■□□□□ 0.02
SMPDL3A-201ENST00000368440 BRD8Q9H0E9 1235 aa15.2■□□□□ 0.02
SMPDL3A-201ENST00000368440 AMACRQ9UHK6 382 aa15.2■□□□□ 0.02
SMPDL3A-201ENST00000368440 TMEM131Q92545 1883 aa15.2■□□□□ 0.02
SMPDL3A-201ENST00000368440 TRPM6Q9BX84 2022 aa15.2■□□□□ 0.02
SMPDL3A-201ENST00000368440 A0A1B0GTW7 788 aa15.2■□□□□ 0.02
SMPDL3A-201ENST00000368440 LNP1A1A4G5 178 aa15.2■□□□□ 0.02
SMPDL3A-201ENST00000368440 UPK3BL1B0FP48 263 aa15.2■□□□□ 0.02
SMPDL3A-201ENST00000368440 UPK3BL2E5RIL1 263 aa15.2■□□□□ 0.02
SMPDL3A-201ENST00000368440 KHNYNO15037 678 aaKnown RBP15.2■□□□□ 0.02
SMPDL3A-201ENST00000368440 BCAT2O15382 392 aaPredicted RBP15.2■□□□□ 0.02
SMPDL3A-201ENST00000368440 HTRA2O43464 458 aaPredicted RBP15.2■□□□□ 0.02
SMPDL3A-201ENST00000368440 NEBLO76041 1014 aa15.2■□□□□ 0.02
SMPDL3A-201ENST00000368440 MMP2P08253 660 aa15.2■□□□□ 0.02
SMPDL3A-201ENST00000368440 PTPN3P26045 913 aa15.2■□□□□ 0.02
SMPDL3A-201ENST00000368440 CETN2P41208 172 aa15.2■□□□□ 0.02
SMPDL3A-201ENST00000368440 DPP6P42658 865 aa15.2■□□□□ 0.02
SMPDL3A-201ENST00000368440 WASHC5Q12768 1159 aa15.2■□□□□ 0.02
SMPDL3A-201ENST00000368440 KLF1Q13351 362 aaPredicted RBP15.2■□□□□ 0.02
SMPDL3A-201ENST00000368440 FGL2Q14314 439 aa15.2■□□□□ 0.02
SMPDL3A-201ENST00000368440 RPS6KA1Q15418 735 aa15.2■□□□□ 0.02
SMPDL3A-201ENST00000368440 TMEM259Q4ZIN3 620 aa15.2■□□□□ 0.02
SMPDL3A-201ENST00000368440 NEK5Q6P3R8 708 aa15.2■□□□□ 0.02
SMPDL3A-201ENST00000368440 BRAT1Q6PJG6 821 aa15.2■□□□□ 0.02
SMPDL3A-201ENST00000368440 HORMAD1Q86X24 394 aa15.2■□□□□ 0.02
SMPDL3A-201ENST00000368440 C12orf50Q8NA57 414 aaPredicted RBP15.2■□□□□ 0.02
SMPDL3A-201ENST00000368440 TRIM58Q8NG06 486 aa15.2■□□□□ 0.02
SMPDL3A-201ENST00000368440 KIF18AQ8NI77 898 aa15.2■□□□□ 0.02
SMPDL3A-201ENST00000368440 HCAR2Q8TDS4 363 aa15.2■□□□□ 0.02
SMPDL3A-201ENST00000368440 PDCD6IPQ8WUM4 868 aaKnown RBP15.2■□□□□ 0.02
SMPDL3A-201ENST00000368440 AGAP3Q96P47 875 aa15.2■□□□□ 0.02
SMPDL3A-201ENST00000368440 MYOCQ99972 504 aa15.2■□□□□ 0.02
SMPDL3A-201ENST00000368440 TLR10Q9BXR5 811 aa15.2■□□□□ 0.02
SMPDL3A-201ENST00000368440 CAPN10Q9HC96 672 aa15.2■□□□□ 0.02
SMPDL3A-201ENST00000368440 FZD3Q9NPG1 666 aa15.2■□□□□ 0.02
SMPDL3A-201ENST00000368440 PCDH12Q9NPG4 1184 aa15.2■□□□□ 0.02
SMPDL3A-201ENST00000368440 SUSD2Q9UGT4 822 aa15.2■□□□□ 0.02
SMPDL3A-201ENST00000368440 KIF2AO00139 706 aaPredicted RBP15.19■□□□□ 0.02
SMPDL3A-201ENST00000368440 SOCS5O75159 536 aa15.19■□□□□ 0.02
SMPDL3A-201ENST00000368440 TJP3O95049 919 aa15.19■□□□□ 0.02
SMPDL3A-201ENST00000368440 SERPINF2P08697 491 aa15.19■□□□□ 0.02
SMPDL3A-201ENST00000368440 GNSP15586 552 aa15.19■□□□□ 0.02
SMPDL3A-201ENST00000368440 PTPRRQ15256 657 aa15.19■□□□□ 0.02
SMPDL3A-201ENST00000368440 SLC45A4Q5BKX6 768 aa15.19■□□□□ 0.02
SMPDL3A-201ENST00000368440 RALGPS1Q5JS13 557 aa15.19■□□□□ 0.02
SMPDL3A-201ENST00000368440 WRAP53Q9BUR4 548 aaKnown RBP15.19■□□□□ 0.02
SMPDL3A-201ENST00000368440 SLC6A14Q9UN76 642 aa15.19■□□□□ 0.02
SMPDL3A-201ENST00000368440 CA5BQ9Y2D0 317 aa15.19■□□□□ 0.02
SMPDL3A-201ENST00000368440 R3HDM2Q9Y2K5 976 aaKnown RBP15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms