RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 PCDHGA7Q9Y5G6 932 aa12.23□□□□□ -0.45
CLIP3-201ENST00000360535 DOCK3Q8IZD9 2030 aa12.23□□□□□ -0.45
CLIP3-201ENST00000360535 HEATR9A2RTY3 570 aa12.22□□□□□ -0.45
CLIP3-201ENST00000360535 PLOD2O00469 737 aa12.22□□□□□ -0.45
CLIP3-201ENST00000360535 TADA2AO75478 443 aa12.22□□□□□ -0.45
CLIP3-201ENST00000360535 MT-ND1P03886 318 aa12.22□□□□□ -0.45
CLIP3-201ENST00000360535 LRPAP1P30533 357 aa12.22□□□□□ -0.45
CLIP3-201ENST00000360535 SEMA3BQ13214 749 aa12.22□□□□□ -0.45
CLIP3-201ENST00000360535 TRIM25Q14258 630 aaKnown RBP12.22□□□□□ -0.45
CLIP3-201ENST00000360535 CAPRIN1Q14444 709 aaKnown RBP12.22□□□□□ -0.45
CLIP3-201ENST00000360535 MFSD10Q14728 455 aa12.22□□□□□ -0.45
CLIP3-201ENST00000360535 BTBD8Q5XKL5 378 aa12.22□□□□□ -0.45
CLIP3-201ENST00000360535 ZBTB49Q6ZSB9 765 aa12.22□□□□□ -0.45
CLIP3-201ENST00000360535 DDIASQ8IXT1 998 aa12.22□□□□□ -0.45
CLIP3-201ENST00000360535 TOP6BLQ8N6T0 577 aa12.22□□□□□ -0.45
CLIP3-201ENST00000360535 TSPAN14Q8NG11 270 aa12.22□□□□□ -0.45
CLIP3-201ENST00000360535 NPLOC4Q8TAT6 608 aa12.22□□□□□ -0.45
CLIP3-201ENST00000360535 SPPL2BQ8TCT7 592 aa12.22□□□□□ -0.45
CLIP3-201ENST00000360535 ANKRD49Q8WVL7 239 aa12.22□□□□□ -0.45
CLIP3-201ENST00000360535 TINF2Q9BSI4 451 aa12.22□□□□□ -0.45
CLIP3-201ENST00000360535 CNGB3Q9NQW8 809 aa12.22□□□□□ -0.45
CLIP3-201ENST00000360535 TSR3Q9UJK0 312 aaKnown RBP12.22□□□□□ -0.45
CLIP3-201ENST00000360535 LTBP3Q9NS15 1303 aa12.22□□□□□ -0.45
CLIP3-201ENST00000360535 ACOT8O14734 319 aa12.22□□□□□ -0.45
CLIP3-201ENST00000360535 STAMBPO95630 424 aa12.22□□□□□ -0.45
CLIP3-201ENST00000360535 CLIC3O95833 236 aa12.22□□□□□ -0.45
CLIP3-201ENST00000360535 ASLP04424 464 aa12.22□□□□□ -0.45
CLIP3-201ENST00000360535 ATP5F1P24539 256 aaPredicted RBP12.22□□□□□ -0.45
CLIP3-201ENST00000360535 GPR142Q7Z601 462 aa12.22□□□□□ -0.45
CLIP3-201ENST00000360535 CATSPER1Q8NEC5 780 aa12.22□□□□□ -0.45
CLIP3-201ENST00000360535 EMID1Q96A84 441 aaPredicted RBP12.22□□□□□ -0.45
CLIP3-201ENST00000360535 MAML3Q96JK9 1138 aa12.22□□□□□ -0.45
CLIP3-201ENST00000360535 GPR78Q96P69 363 aa12.22□□□□□ -0.45
CLIP3-201ENST00000360535 CCDC28BQ9BUN5 200 aa12.22□□□□□ -0.45
CLIP3-201ENST00000360535 KCTD3Q9Y597 815 aa12.22□□□□□ -0.45
CLIP3-201ENST00000360535 A8MT66 165 aa12.22□□□□□ -0.45
CLIP3-201ENST00000360535 SLCO1B7G3V0H7 640 aa12.22□□□□□ -0.45
CLIP3-201ENST00000360535 FBP2O00757 339 aa12.22□□□□□ -0.45
CLIP3-201ENST00000360535 FOXD2O60548 495 aaPredicted RBP12.22□□□□□ -0.45
CLIP3-201ENST00000360535 PAGE1O75459 146 aa12.22□□□□□ -0.45
CLIP3-201ENST00000360535 SIX3O95343 332 aaPredicted RBP12.22□□□□□ -0.45
CLIP3-201ENST00000360535 CHRM3P20309 590 aa12.22□□□□□ -0.45
CLIP3-201ENST00000360535 CES1P23141 567 aa12.22□□□□□ -0.45
CLIP3-201ENST00000360535 RDH11Q8TC12 318 aa12.22□□□□□ -0.45
CLIP3-201ENST00000360535 SNRNP27Q8WVK2 155 aaKnown RBP12.22□□□□□ -0.45
CLIP3-201ENST00000360535 KCTD13Q8WZ19 329 aa12.22□□□□□ -0.45
CLIP3-201ENST00000360535 NTAN1Q96AB6 310 aa12.22□□□□□ -0.45
CLIP3-201ENST00000360535 FCRL2Q96LA5 508 aaPredicted RBP12.22□□□□□ -0.45
CLIP3-201ENST00000360535 MRPL57Q9BQC6 102 aaKnown RBP12.22□□□□□ -0.45
CLIP3-201ENST00000360535 DCUN1D5Q9BTE7 237 aa12.22□□□□□ -0.45
CLIP3-201ENST00000360535 MRPS26Q9BYN8 205 aaKnown RBP12.22□□□□□ -0.45
CLIP3-201ENST00000360535 CACNA2D2Q9NY47 1150 aa12.22□□□□□ -0.45
CLIP3-201ENST00000360535 KCNH4Q9UQ05 1017 aa12.22□□□□□ -0.45
CLIP3-201ENST00000360535 CLEC11AQ9Y240 323 aa12.22□□□□□ -0.45
CLIP3-201ENST00000360535 TCAF1Q9Y4C2 921 aa12.22□□□□□ -0.45
CLIP3-201ENST00000360535 PRSS51A0A1B0GVH4 220 aa12.21□□□□□ -0.45
CLIP3-201ENST00000360535 PAMP19021 973 aa12.21□□□□□ -0.45
CLIP3-201ENST00000360535 ARL1P40616 181 aaPredicted RBP12.21□□□□□ -0.45
CLIP3-201ENST00000360535 GALK1P51570 392 aa12.21□□□□□ -0.45
CLIP3-201ENST00000360535 WNT3AP56704 352 aa12.21□□□□□ -0.45
CLIP3-201ENST00000360535 STX5Q13190 355 aa12.21□□□□□ -0.45
CLIP3-201ENST00000360535 TMEM102Q8N9M5 508 aaPredicted RBP12.21□□□□□ -0.45
CLIP3-201ENST00000360535 CANT1Q8WVQ1 401 aa12.21□□□□□ -0.45
CLIP3-201ENST00000360535 NCSTNQ92542 709 aa12.21□□□□□ -0.45
CLIP3-201ENST00000360535 NSMCE4AQ9NXX6 385 aa12.21□□□□□ -0.45
CLIP3-201ENST00000360535 CCL15-CCL14A0A0B4J2E2 113 aa12.21□□□□□ -0.45
CLIP3-201ENST00000360535 TARM1B6A8C7 271 aa12.21□□□□□ -0.45
CLIP3-201ENST00000360535 ANXA9O76027 345 aa12.21□□□□□ -0.45
CLIP3-201ENST00000360535 THP07101 528 aa12.21□□□□□ -0.45
CLIP3-201ENST00000360535 HMBSP08397 361 aa12.21□□□□□ -0.45
CLIP3-201ENST00000360535 OR4Q2P0C623 313 aa12.21□□□□□ -0.45
CLIP3-201ENST00000360535 CD86P42081 329 aa12.21□□□□□ -0.45
CLIP3-201ENST00000360535 KCNC1P48547 511 aa12.21□□□□□ -0.45
CLIP3-201ENST00000360535 MAPK10P53779 464 aa12.21□□□□□ -0.45
CLIP3-201ENST00000360535 RPS6KA2Q15349 733 aa12.21□□□□□ -0.45
CLIP3-201ENST00000360535 CCL15Q16663 113 aa12.21□□□□□ -0.45
CLIP3-201ENST00000360535 FUT11Q495W5 492 aa12.21□□□□□ -0.45
CLIP3-201ENST00000360535 DENND5AQ6IQ26 1287 aa12.21□□□□□ -0.45
CLIP3-201ENST00000360535 KLC3Q6P597 504 aa12.21□□□□□ -0.45
CLIP3-201ENST00000360535 SCIMPQ6UWF3 145 aa12.21□□□□□ -0.45
CLIP3-201ENST00000360535 PIWIL4Q7Z3Z4 852 aaKnown RBP12.21□□□□□ -0.45
CLIP3-201ENST00000360535 NUP93Q8N1F7 819 aa12.21□□□□□ -0.45
CLIP3-201ENST00000360535 CPSF7Q8N684 471 aaKnown RBP12.21□□□□□ -0.45
CLIP3-201ENST00000360535 SLC9A7Q96T83 725 aa12.21□□□□□ -0.45
CLIP3-201ENST00000360535 VAT1Q99536 393 aa12.21□□□□□ -0.45
CLIP3-201ENST00000360535 ABHD16BQ9H3Z7 469 aa12.21□□□□□ -0.45
CLIP3-201ENST00000360535 GALNT8Q9NY28 637 aa12.21□□□□□ -0.45
CLIP3-201ENST00000360535 CPA4Q9UI42 421 aa12.21□□□□□ -0.45
CLIP3-201ENST00000360535 CROTQ9UKG9 612 aa12.21□□□□□ -0.45
CLIP3-201ENST00000360535 BTRCQ9Y297 605 aa12.21□□□□□ -0.45
CLIP3-201ENST00000360535 A0A0G2JMZ2 1700 aa12.21□□□□□ -0.46
CLIP3-201ENST00000360535 LRRC37A2A6NM11 1700 aa12.21□□□□□ -0.46
CLIP3-201ENST00000360535 SBF1O95248 1867 aa12.21□□□□□ -0.46
CLIP3-201ENST00000360535 PLXNA1Q9UIW2 1896 aa12.21□□□□□ -0.46
CLIP3-201ENST00000360535 RNF103-CHMP3A0A140T963 221 aa12.21□□□□□ -0.46
CLIP3-201ENST00000360535 BTBD19C9JJ37 291 aa12.21□□□□□ -0.46
CLIP3-201ENST00000360535 SRP72O76094 671 aaKnown RBP12.21□□□□□ -0.46
CLIP3-201ENST00000360535 IPO13O94829 963 aaKnown RBP12.21□□□□□ -0.46
CLIP3-201ENST00000360535 F9P00740 461 aa12.21□□□□□ -0.46
CLIP3-201ENST00000360535 SNRPB2P08579 225 aaKnown RBP12.21□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms