RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 FZD6O60353 706 aa22.33■■□□□ 1.17
SHMT1-203ENST00000354098 PHF2O75151 1096 aa22.33■■□□□ 1.17
SHMT1-203ENST00000354098 PMPCBO75439 489 aa22.33■■□□□ 1.17
SHMT1-203ENST00000354098 URI1O94763 535 aaPredicted RBP22.33■■□□□ 1.17
SHMT1-203ENST00000354098 PGLSO95336 258 aa22.33■■□□□ 1.17
SHMT1-203ENST00000354098 METTL18O95568 372 aa22.33■■□□□ 1.17
SHMT1-203ENST00000354098 PRLP01236 227 aa22.33■■□□□ 1.17
SHMT1-203ENST00000354098 PCSK7Q16549 785 aa22.33■■□□□ 1.17
SHMT1-203ENST00000354098 UGP2Q16851 508 aa22.33■■□□□ 1.17
SHMT1-203ENST00000354098 ITPRIPL1Q6GPH6 555 aa22.33■■□□□ 1.17
SHMT1-203ENST00000354098 BRAT1Q6PJG6 821 aa22.33■■□□□ 1.17
SHMT1-203ENST00000354098 CCDC137Q6PK04 289 aaKnown RBP22.33■■□□□ 1.17
SHMT1-203ENST00000354098 ARHGEF18Q6ZSZ5 1173 aa22.33■■□□□ 1.17
SHMT1-203ENST00000354098 GSTA5Q7RTV2 222 aa22.33■■□□□ 1.17
SHMT1-203ENST00000354098 GPR174Q9BXC1 333 aa22.33■■□□□ 1.17
SHMT1-203ENST00000354098 SGK2Q9HBY8 427 aa22.33■■□□□ 1.17
SHMT1-203ENST00000354098 ITM2BQ9Y287 266 aa22.33■■□□□ 1.17
SHMT1-203ENST00000354098 DMDP11532 3685 aa22.33■■□□□ 1.17
SHMT1-203ENST00000354098 SPINT1O43278 529 aa22.33■■□□□ 1.16
SHMT1-203ENST00000354098 MAP3K13O43283 966 aa22.33■■□□□ 1.16
SHMT1-203ENST00000354098 PLRG1O43660 514 aaKnown RBP22.33■■□□□ 1.16
SHMT1-203ENST00000354098 CNR2P34972 360 aa22.33■■□□□ 1.16
SHMT1-203ENST00000354098 SEMG2Q02383 582 aa22.33■■□□□ 1.16
SHMT1-203ENST00000354098 P3H1Q32P28 736 aa22.33■■□□□ 1.16
SHMT1-203ENST00000354098 ARMC12Q5T9G4 340 aa22.33■■□□□ 1.16
SHMT1-203ENST00000354098 ATL2Q8NHH9 583 aa22.33■■□□□ 1.16
SHMT1-203ENST00000354098 DDX47Q9H0S4 455 aaKnown RBP22.33■■□□□ 1.16
SHMT1-203ENST00000354098 GGT7Q9UJ14 662 aa22.33■■□□□ 1.16
SHMT1-203ENST00000354098 NUMA1Q14980 2115 aa22.32■■□□□ 1.16
SHMT1-203ENST00000354098 PRR23AA6NEV1 266 aa22.32■■□□□ 1.16
SHMT1-203ENST00000354098 SLC7A4O43246 635 aa22.32■■□□□ 1.16
SHMT1-203ENST00000354098 SEMA4FO95754 770 aa22.32■■□□□ 1.16
SHMT1-203ENST00000354098 RPL6Q02878 288 aaKnown RBP22.32■■□□□ 1.16
SHMT1-203ENST00000354098 PTPRRQ15256 657 aa22.32■■□□□ 1.16
SHMT1-203ENST00000354098 FAXCQ5TGI0 409 aa22.32■■□□□ 1.16
SHMT1-203ENST00000354098 KDELC1Q6UW63 502 aa22.32■■□□□ 1.16
SHMT1-203ENST00000354098 CCDC89Q8N998 374 aa22.32■■□□□ 1.16
SHMT1-203ENST00000354098 PIH1D2Q8WWB5 315 aa22.32■■□□□ 1.16
SHMT1-203ENST00000354098 SMIM14Q96QK8 99 aa22.32■■□□□ 1.16
SHMT1-203ENST00000354098 MLPHQ9BV36 600 aaPredicted RBP22.32■■□□□ 1.16
SHMT1-203ENST00000354098 C6orf106Q9H6K1 298 aaPredicted RBP22.32■■□□□ 1.16
SHMT1-203ENST00000354098 PCDH9Q9HC56 1237 aa22.32■■□□□ 1.16
SHMT1-203ENST00000354098 FAM153AQ9UHL3 310 aa22.32■■□□□ 1.16
SHMT1-203ENST00000354098 FADS3Q9Y5Q0 445 aa22.32■■□□□ 1.16
SHMT1-203ENST00000354098 MYO15AQ9UKN7 3530 aa22.32■■□□□ 1.16
SHMT1-203ENST00000354098 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa22.31■■□□□ 1.16
SHMT1-203ENST00000354098 UPK3BL1B0FP48 263 aa22.31■■□□□ 1.16
SHMT1-203ENST00000354098 UPK3BL2E5RIL1 263 aa22.31■■□□□ 1.16
SHMT1-203ENST00000354098 NDUFS2O75306 463 aa22.31■■□□□ 1.16
SHMT1-203ENST00000354098 CPP00450 1065 aa22.31■■□□□ 1.16
SHMT1-203ENST00000354098 RPL22P35268 128 aaKnown RBP22.31■■□□□ 1.16
SHMT1-203ENST00000354098 PTPN5P54829 565 aa22.31■■□□□ 1.16
SHMT1-203ENST00000354098 CCDC15Q0P6D6 951 aa22.31■■□□□ 1.16
SHMT1-203ENST00000354098 PARP6Q2NL67 630 aa22.31■■□□□ 1.16
SHMT1-203ENST00000354098 CEP68Q76N32 757 aa22.31■■□□□ 1.16
SHMT1-203ENST00000354098 TMEFF1Q8IYR6 380 aa22.31■■□□□ 1.16
SHMT1-203ENST00000354098 ATOH1Q92858 354 aaPredicted RBP22.31■■□□□ 1.16
SHMT1-203ENST00000354098 KCNH6Q9H252 994 aa22.31■■□□□ 1.16
SHMT1-203ENST00000354098 PCDH12Q9NPG4 1184 aa22.31■■□□□ 1.16
SHMT1-203ENST00000354098 FAM86C1Q9NVL1 165 aa22.31■■□□□ 1.16
SHMT1-203ENST00000354098 TBC1D3DA0A087WVF3 549 aa22.3■■□□□ 1.16
SHMT1-203ENST00000354098 TBC1D3IA0A087WXS9 549 aa22.3■■□□□ 1.16
SHMT1-203ENST00000354098 TBC1D3EA0A087X179 549 aa22.3■■□□□ 1.16
SHMT1-203ENST00000354098 TBC1D3KA0A087X1G2 549 aa22.3■■□□□ 1.16
SHMT1-203ENST00000354098 TBC1D3FA6NER0 549 aaPredicted RBP22.3■■□□□ 1.16
SHMT1-203ENST00000354098 TBC1D3LB9A6J9 549 aa22.3■■□□□ 1.16
SHMT1-203ENST00000354098 TBC1D3HP0C7X1 549 aa22.3■■□□□ 1.16
SHMT1-203ENST00000354098 XPAP23025 273 aaPredicted RBP22.3■■□□□ 1.16
SHMT1-203ENST00000354098 WNT3AP56704 352 aa22.3■■□□□ 1.16
SHMT1-203ENST00000354098 SIM2Q14190 667 aaPredicted RBP22.3■■□□□ 1.16
SHMT1-203ENST00000354098 TRIP13Q15645 432 aaPredicted RBP22.3■■□□□ 1.16
SHMT1-203ENST00000354098 TBC1D3GQ6DHY5 549 aa22.3■■□□□ 1.16
SHMT1-203ENST00000354098 TBC1D3CQ6IPX1 549 aa22.3■■□□□ 1.16
SHMT1-203ENST00000354098 SLC36A4Q6YBV0 504 aa22.3■■□□□ 1.16
SHMT1-203ENST00000354098 TBC1D3Q8IZP1 549 aaPredicted RBP22.3■■□□□ 1.16
SHMT1-203ENST00000354098 SPOCK2Q92563 424 aa22.3■■□□□ 1.16
SHMT1-203ENST00000354098 MRGPRX2Q96LB1 330 aa22.3■■□□□ 1.16
SHMT1-203ENST00000354098 TRIB3Q96RU7 358 aa22.3■■□□□ 1.16
SHMT1-203ENST00000354098 DUSP15Q9H1R2 295 aaPredicted RBP22.3■■□□□ 1.16
SHMT1-203ENST00000354098 RAPGEFL1Q9UHV5 662 aa22.3■■□□□ 1.16
SHMT1-203ENST00000354098 CDC23Q9UJX2 597 aa22.3■■□□□ 1.16
SHMT1-203ENST00000354098 HCN4Q9Y3Q4 1203 aa22.3■■□□□ 1.16
SHMT1-203ENST00000354098 PLXND1Q9Y4D7 1925 aa22.3■■□□□ 1.16
SHMT1-203ENST00000354098 AREL1O15033 823 aa22.3■■□□□ 1.16
SHMT1-203ENST00000354098 CTPS1P17812 591 aa22.3■■□□□ 1.16
SHMT1-203ENST00000354098 FNTAP49354 379 aa22.3■■□□□ 1.16
SHMT1-203ENST00000354098 POLR2LP62875 67 aaKnown RBP22.3■■□□□ 1.16
SHMT1-203ENST00000354098 CDK18Q07002 472 aa22.3■■□□□ 1.16
SHMT1-203ENST00000354098 GALNT3Q14435 633 aa22.3■■□□□ 1.16
SHMT1-203ENST00000354098 SLC14A2Q15849 920 aa22.3■■□□□ 1.16
SHMT1-203ENST00000354098 PLK5Q496M5 336 aa22.3■■□□□ 1.16
SHMT1-203ENST00000354098 ZC3H14Q6PJT7 736 aaKnown RBP22.3■■□□□ 1.16
SHMT1-203ENST00000354098 KLHL7Q8IXQ5 586 aa22.3■■□□□ 1.16
SHMT1-203ENST00000354098 LPCAT1Q8NF37 534 aa22.3■■□□□ 1.16
SHMT1-203ENST00000354098 IPMKQ8NFU5 416 aa22.3■■□□□ 1.16
SHMT1-203ENST00000354098 OR2T34Q8NGX1 318 aa22.3■■□□□ 1.16
SHMT1-203ENST00000354098 KIF18AQ8NI77 898 aa22.3■■□□□ 1.16
SHMT1-203ENST00000354098 RAB7BQ96AH8 199 aa22.3■■□□□ 1.16
SHMT1-203ENST00000354098 VPS45Q9NRW7 570 aa22.3■■□□□ 1.16
SHMT1-203ENST00000354098 PHTF1Q9UMS5 762 aa22.3■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms