RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 VWA7Q9Y334 891 aa6.85□□□□□ -1.31
VPS39-202ENST00000348544 MAFBQ9Y5Q3 323 aaPredicted RBP6.85□□□□□ -1.31
VPS39-202ENST00000348544 DGKBQ9Y6T7 804 aa6.85□□□□□ -1.31
VPS39-202ENST00000348544 ZNF638Q14966 1978 aaKnown RBP6.85□□□□□ -1.31
VPS39-202ENST00000348544 NEMP2A6NFY4 417 aa6.84□□□□□ -1.31
VPS39-202ENST00000348544 TRPC5OSA6NMA1 111 aa6.84□□□□□ -1.31
VPS39-202ENST00000348544 TIMM44O43615 452 aa6.84□□□□□ -1.31
VPS39-202ENST00000348544 SYNCRIPO60506 623 aaKnown RBP6.84□□□□□ -1.31
VPS39-202ENST00000348544 NOL3O60936 208 aaKnown RBP6.84□□□□□ -1.31
VPS39-202ENST00000348544 RSL1D1O76021 490 aaKnown RBP6.84□□□□□ -1.31
VPS39-202ENST00000348544 TOMM70O94826 608 aa6.84□□□□□ -1.31
VPS39-202ENST00000348544 PGK1P00558 417 aa6.84□□□□□ -1.31
VPS39-202ENST00000348544 ITGB3P05106 788 aa6.84□□□□□ -1.31
VPS39-202ENST00000348544 MBL2P11226 248 aaPredicted RBP6.84□□□□□ -1.31
VPS39-202ENST00000348544 JUNBP17275 347 aaPredicted RBP6.84□□□□□ -1.31
VPS39-202ENST00000348544 TGM1P22735 817 aa6.84□□□□□ -1.31
VPS39-202ENST00000348544 NR4A1P22736 598 aa6.84□□□□□ -1.31
VPS39-202ENST00000348544 S100A1P23297 94 aa6.84□□□□□ -1.31
VPS39-202ENST00000348544 ARCN1P48444 511 aaKnown RBP6.84□□□□□ -1.31
VPS39-202ENST00000348544 NDST1P52848 882 aa6.84□□□□□ -1.31
VPS39-202ENST00000348544 PRKAA2P54646 552 aa6.84□□□□□ -1.31
VPS39-202ENST00000348544 ADARB1P78563 741 aaKnown RBP6.84□□□□□ -1.31
VPS39-202ENST00000348544 ANO4Q32M45 955 aa6.84□□□□□ -1.31
VPS39-202ENST00000348544 CERCAMQ5T4B2 595 aa6.84□□□□□ -1.31
VPS39-202ENST00000348544 AGAP7PQ5VUJ5 663 aa6.84□□□□□ -1.31
VPS39-202ENST00000348544 EEF1DP3Q658K8 133 aa6.84□□□□□ -1.31
VPS39-202ENST00000348544 LCLAT1Q6UWP7 414 aa6.84□□□□□ -1.31
VPS39-202ENST00000348544 CYHR1Q6ZMK1 362 aa6.84□□□□□ -1.31
VPS39-202ENST00000348544 KCNMB4Q86W47 210 aa6.84□□□□□ -1.31
VPS39-202ENST00000348544 ZC3HC1Q86WB0 502 aaKnown RBP6.84□□□□□ -1.31
VPS39-202ENST00000348544 FUNDC1Q8IVP5 155 aa6.84□□□□□ -1.31
VPS39-202ENST00000348544 MFSD6LQ8IWD5 586 aa6.84□□□□□ -1.31
VPS39-202ENST00000348544 ANKRD13AQ8IZ07 590 aa6.84□□□□□ -1.31
VPS39-202ENST00000348544 DHRSXQ8N5I4 330 aa6.84□□□□□ -1.31
VPS39-202ENST00000348544 PDPRQ8NCN5 879 aa6.84□□□□□ -1.31
VPS39-202ENST00000348544 CLEC4CQ8WTT0 213 aa6.84□□□□□ -1.31
VPS39-202ENST00000348544 ZC3H15Q8WU90 426 aaKnown RBP6.84□□□□□ -1.31
VPS39-202ENST00000348544 HDAC10Q969S8 669 aa6.84□□□□□ -1.31
VPS39-202ENST00000348544 ZUFSPQ96AP4 578 aa6.84□□□□□ -1.31
VPS39-202ENST00000348544 FKBP10Q96AY3 582 aa6.84□□□□□ -1.31
VPS39-202ENST00000348544 CENPNQ96H22 339 aaPredicted RBP6.84□□□□□ -1.31
VPS39-202ENST00000348544 SLC45A3Q96JT2 553 aa6.84□□□□□ -1.31
VPS39-202ENST00000348544 C9orf16Q9BUW7 83 aa6.84□□□□□ -1.31
VPS39-202ENST00000348544 AKIP1Q9NQ31 210 aa6.84□□□□□ -1.31
VPS39-202ENST00000348544 SCUBE2Q9NQ36 999 aa6.84□□□□□ -1.31
VPS39-202ENST00000348544 ZNF302Q9NR11 478 aa6.84□□□□□ -1.31
VPS39-202ENST00000348544 SMPD3Q9NY59 655 aaPredicted RBP6.84□□□□□ -1.31
VPS39-202ENST00000348544 VANGL2Q9ULK5 521 aa6.84□□□□□ -1.31
VPS39-202ENST00000348544 CCDC78A2IDD5 438 aa6.84□□□□□ -1.31
VPS39-202ENST00000348544 HACD1B0YJ81 288 aa6.84□□□□□ -1.31
VPS39-202ENST00000348544 FAM47E-STBD1D6RA91 191 aa6.84□□□□□ -1.31
VPS39-202ENST00000348544 UBDO15205 165 aa6.84□□□□□ -1.31
VPS39-202ENST00000348544 MT-CO1P00395 513 aa6.84□□□□□ -1.31
VPS39-202ENST00000348544 FASP25445 335 aa6.84□□□□□ -1.31
VPS39-202ENST00000348544 YWHAQP27348 245 aa6.84□□□□□ -1.31
VPS39-202ENST00000348544 SHMT2P34897 504 aa6.84□□□□□ -1.31
VPS39-202ENST00000348544 CSE1LP55060 971 aaKnown RBP6.84□□□□□ -1.31
VPS39-202ENST00000348544 GJA9P57773 515 aa6.84□□□□□ -1.31
VPS39-202ENST00000348544 SLC6A3Q01959 620 aa6.84□□□□□ -1.31
VPS39-202ENST00000348544 DNASE1L3Q13609 305 aa6.84□□□□□ -1.31
VPS39-202ENST00000348544 USP10Q14694 798 aaKnown RBP6.84□□□□□ -1.31
VPS39-202ENST00000348544 SURF1Q15526 300 aa6.84□□□□□ -1.31
VPS39-202ENST00000348544 MAPRE2Q15555 327 aa6.84□□□□□ -1.31
VPS39-202ENST00000348544 GOLGA7BQ2TAP0 167 aa6.84□□□□□ -1.31
VPS39-202ENST00000348544 PGS1Q32NB8 556 aa6.84□□□□□ -1.31
VPS39-202ENST00000348544 CCNYL2Q5T2Q4 361 aa6.84□□□□□ -1.31
VPS39-202ENST00000348544 TBPL2Q6SJ96 375 aa6.84□□□□□ -1.31
VPS39-202ENST00000348544 HACD2Q6Y1H2 254 aa6.84□□□□□ -1.31
VPS39-202ENST00000348544 SLC16A12Q6ZSM3 486 aa6.84□□□□□ -1.31
VPS39-202ENST00000348544 FAM35AQ86V20 835 aa6.84□□□□□ -1.31
VPS39-202ENST00000348544 NT5DC4Q86YG4 428 aa6.84□□□□□ -1.31
VPS39-202ENST00000348544 SLC41A1Q8IVJ1 513 aa6.84□□□□□ -1.31
VPS39-202ENST00000348544 CEP97Q8IW35 865 aa6.84□□□□□ -1.31
VPS39-202ENST00000348544 DDIASQ8IXT1 998 aa6.84□□□□□ -1.31
VPS39-202ENST00000348544 RAB2BQ8WUD1 216 aa6.84□□□□□ -1.31
VPS39-202ENST00000348544 EFHD2Q96C19 240 aaPredicted RBP6.84□□□□□ -1.31
VPS39-202ENST00000348544 NXNL1Q96CM4 212 aa6.84□□□□□ -1.31
VPS39-202ENST00000348544 ZNF668Q96K58 619 aaPredicted RBP6.84□□□□□ -1.31
VPS39-202ENST00000348544 MYRFLQ96LU7 910 aa6.84□□□□□ -1.31
VPS39-202ENST00000348544 TRIM8Q9BZR9 551 aa6.84□□□□□ -1.31
VPS39-202ENST00000348544 TMEM39BQ9GZU3 492 aa6.84□□□□□ -1.31
VPS39-202ENST00000348544 KLHL25Q9H0H3 589 aa6.84□□□□□ -1.31
VPS39-202ENST00000348544 RAD21L1Q9H4I0 556 aa6.84□□□□□ -1.31
VPS39-202ENST00000348544 EHD1Q9H4M9 534 aa6.84□□□□□ -1.31
VPS39-202ENST00000348544 MEAF6Q9HAF1 191 aa6.84□□□□□ -1.31
VPS39-202ENST00000348544 IL1RL2Q9HB29 575 aa6.84□□□□□ -1.31
VPS39-202ENST00000348544 FBRSL1Q9HCM7 1045 aaKnown RBP6.84□□□□□ -1.31
VPS39-202ENST00000348544 CHRAC1Q9NRG0 131 aa6.84□□□□□ -1.31
VPS39-202ENST00000348544 TMPRSS4Q9NRS4 437 aa6.84□□□□□ -1.31
VPS39-202ENST00000348544 SCHIP1Q9P0W5 487 aaPredicted RBP6.84□□□□□ -1.31
VPS39-202ENST00000348544 MAP10Q9P2G4 905 aa6.84□□□□□ -1.31
VPS39-202ENST00000348544 SEPT3Q9UH03 358 aa6.84□□□□□ -1.31
VPS39-202ENST00000348544 KLHL3Q9UH77 587 aa6.84□□□□□ -1.31
VPS39-202ENST00000348544 TLK1Q9UKI8 766 aa6.84□□□□□ -1.31
VPS39-202ENST00000348544 ERVK-11Q9UQG0 969 aa6.84□□□□□ -1.31
VPS39-202ENST00000348544 ANKRD6Q9Y2G4 727 aa6.84□□□□□ -1.31
VPS39-202ENST00000348544 COL11A2P13942 1736 aaPredicted RBP6.84□□□□□ -1.31
VPS39-202ENST00000348544 TTC24A2A3L6 582 aaPredicted RBP6.83□□□□□ -1.32
VPS39-202ENST00000348544 AQP12BA6NM10 295 aa6.83□□□□□ -1.32
VPS39-202ENST00000348544 CLDN25C9JDP6 229 aa6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms