RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 C2CD4AQ8NCU7 369 aaPredicted RBP10.42□□□□□ -0.74
LIMA1-201ENST00000341247 OR52K2Q8NGK3 314 aa10.42□□□□□ -0.74
LIMA1-201ENST00000341247 SIKE1Q9BRV8 207 aa10.42□□□□□ -0.74
LIMA1-201ENST00000341247 MTPAPQ9NVV4 582 aaKnown RBP eCLIP10.42□□□□□ -0.74
LIMA1-201ENST00000341247 CDH22Q9UJ99 828 aa10.42□□□□□ -0.74
LIMA1-201ENST00000341247 LRFN2Q9ULH4 789 aa10.42□□□□□ -0.74
LIMA1-201ENST00000341247 RPL26L1Q9UNX3 145 aaKnown RBP10.42□□□□□ -0.74
LIMA1-201ENST00000341247 PCDHB7Q9Y5E2 793 aa10.42□□□□□ -0.74
LIMA1-201ENST00000341247 PATJQ8NI35 1801 aa10.42□□□□□ -0.74
LIMA1-201ENST00000341247 A0A1W2PQ45 241 aaPredicted RBP10.42□□□□□ -0.74
LIMA1-201ENST00000341247 A0A1W2PQY0 241 aa10.42□□□□□ -0.74
LIMA1-201ENST00000341247 HEATR9A2RTY3 570 aa10.42□□□□□ -0.74
LIMA1-201ENST00000341247 MTMR11A4FU01 709 aa10.42□□□□□ -0.74
LIMA1-201ENST00000341247 TMEM114B3SHH9 223 aa10.42□□□□□ -0.74
LIMA1-201ENST00000341247 AP3B1O00203 1094 aa10.42□□□□□ -0.74
LIMA1-201ENST00000341247 MAP3K7O43318 606 aa10.42□□□□□ -0.74
LIMA1-201ENST00000341247 GRID2O43424 1007 aa10.42□□□□□ -0.74
LIMA1-201ENST00000341247 EOMESO95936 686 aa10.42□□□□□ -0.74
LIMA1-201ENST00000341247 RHOQP17081 205 aa10.42□□□□□ -0.74
LIMA1-201ENST00000341247 ATP6V1C1P21283 382 aa10.42□□□□□ -0.74
LIMA1-201ENST00000341247 GLDCP23378 1020 aa10.42□□□□□ -0.74
LIMA1-201ENST00000341247 PIK3R1P27986 724 aa10.42□□□□□ -0.74
LIMA1-201ENST00000341247 CDK18Q07002 472 aa10.42□□□□□ -0.74
LIMA1-201ENST00000341247 ZNF235Q14590 738 aa10.42□□□□□ -0.74
LIMA1-201ENST00000341247 FSCBQ5H9T9 825 aa10.42□□□□□ -0.74
LIMA1-201ENST00000341247 GPR158Q5T848 1215 aa10.42□□□□□ -0.74
LIMA1-201ENST00000341247 OR13C4Q8NGS5 318 aa10.42□□□□□ -0.74
LIMA1-201ENST00000341247 OR13J1Q8NGT2 312 aa10.42□□□□□ -0.74
LIMA1-201ENST00000341247 IMP4Q96G21 291 aaKnown RBP10.42□□□□□ -0.74
LIMA1-201ENST00000341247 SCLYQ96I15 445 aa10.42□□□□□ -0.74
LIMA1-201ENST00000341247 GPR78Q96P69 363 aa10.42□□□□□ -0.74
LIMA1-201ENST00000341247 ALG9Q9H6U8 611 aa10.42□□□□□ -0.74
LIMA1-201ENST00000341247 TNFRSF12AQ9NP84 129 aa10.42□□□□□ -0.74
LIMA1-201ENST00000341247 PRDM5Q9NQX1 630 aaPredicted RBP10.42□□□□□ -0.74
LIMA1-201ENST00000341247 ANKRD6Q9Y2G4 727 aa10.42□□□□□ -0.74
LIMA1-201ENST00000341247 MYO16Q9Y6X6 1858 aa10.42□□□□□ -0.74
LIMA1-201ENST00000341247 ATP6AP2A0A1C7CYW4 349 aa10.42□□□□□ -0.74
LIMA1-201ENST00000341247 STX16-NPEPL1H3BU86 382 aa10.42□□□□□ -0.74
LIMA1-201ENST00000341247 ATP6AP2O75787 350 aa10.42□□□□□ -0.74
LIMA1-201ENST00000341247 ALDH2P05091 517 aa10.42□□□□□ -0.74
LIMA1-201ENST00000341247 MMP2P08253 660 aa10.42□□□□□ -0.74
LIMA1-201ENST00000341247 CCNG1P51959 295 aa10.42□□□□□ -0.74
LIMA1-201ENST00000341247 RPS24P62847 133 aaKnown RBP10.42□□□□□ -0.74
LIMA1-201ENST00000341247 MAP3K21Q5TCX8 1036 aa10.42□□□□□ -0.74
LIMA1-201ENST00000341247 IFT43Q96FT9 208 aa10.42□□□□□ -0.74
LIMA1-201ENST00000341247 DNAJC1Q96KC8 554 aaKnown RBP10.42□□□□□ -0.74
LIMA1-201ENST00000341247 BTN2A3PQ96KV6 586 aa10.42□□□□□ -0.74
LIMA1-201ENST00000341247 MRPL46Q9H2W6 279 aaKnown RBP10.42□□□□□ -0.74
LIMA1-201ENST00000341247 TLR8Q9NR97 1041 aaKnown RBP10.42□□□□□ -0.74
LIMA1-201ENST00000341247 NDE1Q9NXR1 346 aa10.42□□□□□ -0.74
LIMA1-201ENST00000341247 PRUNE2Q8WUY3 3088 aa10.41□□□□□ -0.74
LIMA1-201ENST00000341247 TBKBP1A7MCY6 615 aa10.41□□□□□ -0.74
LIMA1-201ENST00000341247 TSPAN3O60637 253 aa10.41□□□□□ -0.74
LIMA1-201ENST00000341247 NBNO60934 754 aa10.41□□□□□ -0.74
LIMA1-201ENST00000341247 SLC2A3P11169 496 aa10.41□□□□□ -0.74
LIMA1-201ENST00000341247 CDH13P55290 713 aa10.41□□□□□ -0.74
LIMA1-201ENST00000341247 AP2B1P63010 937 aa10.41□□□□□ -0.74
LIMA1-201ENST00000341247 ZNF33AQ06730 810 aa10.41□□□□□ -0.74
LIMA1-201ENST00000341247 PTPRRQ15256 657 aa10.41□□□□□ -0.74
LIMA1-201ENST00000341247 AFMIDQ63HM1 303 aa10.41□□□□□ -0.74
LIMA1-201ENST00000341247 LPCAT4Q643R3 524 aa10.41□□□□□ -0.74
LIMA1-201ENST00000341247 NADSYN1Q6IA69 706 aa10.41□□□□□ -0.74
LIMA1-201ENST00000341247 KIAA0930Q6ICG6 404 aaPredicted RBP10.41□□□□□ -0.74
LIMA1-201ENST00000341247 IZUMO2Q6UXV1 221 aa10.41□□□□□ -0.74
LIMA1-201ENST00000341247 ACAD11Q709F0 780 aa10.41□□□□□ -0.74
LIMA1-201ENST00000341247 BEND5Q7L4P6 421 aa10.41□□□□□ -0.74
LIMA1-201ENST00000341247 UMODL1-AS1Q8N2C9 162 aa10.41□□□□□ -0.74
LIMA1-201ENST00000341247 PDCD6IPQ8WUM4 868 aaKnown RBP10.41□□□□□ -0.74
LIMA1-201ENST00000341247 RCN3Q96D15 328 aa10.41□□□□□ -0.74
LIMA1-201ENST00000341247 TMA16Q96EY4 203 aaKnown RBP10.41□□□□□ -0.74
LIMA1-201ENST00000341247 C8orf48Q96LL4 319 aa10.41□□□□□ -0.74
LIMA1-201ENST00000341247 ZNF512Q96ME7 567 aaPredicted RBP10.41□□□□□ -0.74
LIMA1-201ENST00000341247 STN1Q9H668 368 aaKnown RBP10.41□□□□□ -0.74
LIMA1-201ENST00000341247 TSR3Q9UJK0 312 aaKnown RBP10.41□□□□□ -0.74
LIMA1-201ENST00000341247 MID2Q9UJV3 735 aa10.41□□□□□ -0.74
LIMA1-201ENST00000341247 SORCS3Q9UPU3 1222 aa10.41□□□□□ -0.74
LIMA1-201ENST00000341247 CDYLQ9Y232 598 aa10.41□□□□□ -0.74
LIMA1-201ENST00000341247 ZNF189O75820 626 aaPredicted RBP10.41□□□□□ -0.74
LIMA1-201ENST00000341247 UBTFL6P0CB48 400 aaPredicted RBP10.41□□□□□ -0.74
LIMA1-201ENST00000341247 ALOX15P16050 662 aaPredicted RBP10.41□□□□□ -0.74
LIMA1-201ENST00000341247 CDKN2DP55273 166 aa10.41□□□□□ -0.74
LIMA1-201ENST00000341247 PRKAA1Q13131 559 aa10.41□□□□□ -0.74
LIMA1-201ENST00000341247 FAM26DQ5JW98 314 aa10.41□□□□□ -0.74
LIMA1-201ENST00000341247 HECTD2Q5U5R9 776 aa10.41□□□□□ -0.74
LIMA1-201ENST00000341247 FUT10Q6P4F1 479 aa10.41□□□□□ -0.74
LIMA1-201ENST00000341247 ISLR2Q6UXK2 745 aa10.41□□□□□ -0.74
LIMA1-201ENST00000341247 LRRC8DQ7L1W4 858 aa10.41□□□□□ -0.74
LIMA1-201ENST00000341247 SDCCAG8Q86SQ7 713 aaPredicted RBP10.41□□□□□ -0.74
LIMA1-201ENST00000341247 LMNTD2Q8IXW0 634 aa10.41□□□□□ -0.74
LIMA1-201ENST00000341247 NAT14Q8WUY8 206 aa10.41□□□□□ -0.74
LIMA1-201ENST00000341247 DDX50Q9BQ39 737 aaKnown RBP10.41□□□□□ -0.74
LIMA1-201ENST00000341247 FAM96AQ9H5X1 160 aa10.41□□□□□ -0.74
LIMA1-201ENST00000341247 GKN1Q9NS71 199 aa10.41□□□□□ -0.74
LIMA1-201ENST00000341247 ARHGAP26Q9UNA1 814 aa10.41□□□□□ -0.74
LIMA1-201ENST00000341247 SCN5AQ14524 2016 aa10.41□□□□□ -0.74
LIMA1-201ENST00000341247 UBA6A0AVT1 1052 aaPredicted RBP10.41□□□□□ -0.74
LIMA1-201ENST00000341247 GJB5O95377 273 aa10.41□□□□□ -0.74
LIMA1-201ENST00000341247 RPLP2P05387 115 aaKnown RBP10.41□□□□□ -0.74
LIMA1-201ENST00000341247 APOA4P06727 396 aa10.41□□□□□ -0.74
LIMA1-201ENST00000341247 PAX7P23759 505 aa10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms