RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 L2HGDHQ9H9P8 463 aa3.31□□□□□ -1.88
CSMD3-202ENST00000339701 MYNNQ9NPC7 610 aa3.31□□□□□ -1.88
CSMD3-202ENST00000339701 IL23AQ9NPF7 189 aa3.31□□□□□ -1.88
CSMD3-202ENST00000339701 ADAM22Q9P0K1 906 aa3.31□□□□□ -1.88
CSMD3-202ENST00000339701 CKLFQ9UBR5 152 aa3.31□□□□□ -1.88
CSMD3-202ENST00000339701 CDYLQ9Y232 598 aa3.31□□□□□ -1.88
CSMD3-202ENST00000339701 PTCH2Q9Y6C5 1203 aa3.31□□□□□ -1.88
CSMD3-202ENST00000339701 TSC2P49815 1807 aa3.31□□□□□ -1.88
CSMD3-202ENST00000339701 COL16A1Q07092 1604 aaPredicted RBP3.31□□□□□ -1.88
CSMD3-202ENST00000339701 NOTOA8MTQ0 251 aa3.31□□□□□ -1.88
CSMD3-202ENST00000339701 H3BNH8 94 aa3.31□□□□□ -1.88
CSMD3-202ENST00000339701 USP2O75604 605 aaPredicted RBP3.31□□□□□ -1.88
CSMD3-202ENST00000339701 IL1R1P14778 569 aa3.31□□□□□ -1.88
CSMD3-202ENST00000339701 HLA-DPA1P20036 260 aa3.31□□□□□ -1.88
CSMD3-202ENST00000339701 PTPN3P26045 913 aa3.31□□□□□ -1.88
CSMD3-202ENST00000339701 DDX6P26196 483 aaKnown RBP eCLIP3.31□□□□□ -1.88
CSMD3-202ENST00000339701 S100A12P80511 92 aa3.31□□□□□ -1.88
CSMD3-202ENST00000339701 CSTF1Q05048 431 aaKnown RBP3.31□□□□□ -1.88
CSMD3-202ENST00000339701 CDK18Q07002 472 aa3.31□□□□□ -1.88
CSMD3-202ENST00000339701 GRM2Q14416 872 aa3.31□□□□□ -1.88
CSMD3-202ENST00000339701 ZNF846Q147U1 533 aa3.31□□□□□ -1.88
CSMD3-202ENST00000339701 NDUFA9Q16795 377 aa3.31□□□□□ -1.88
CSMD3-202ENST00000339701 RABL3Q5HYI8 236 aa3.31□□□□□ -1.88
CSMD3-202ENST00000339701 OTOP1Q7RTM1 612 aa3.31□□□□□ -1.88
CSMD3-202ENST00000339701 ZNF720Q7Z2F6 126 aa3.31□□□□□ -1.88
CSMD3-202ENST00000339701 PHF6Q8IWS0 365 aaKnown RBP eCLIP3.31□□□□□ -1.88
CSMD3-202ENST00000339701 CCNYQ8ND76 341 aa3.31□□□□□ -1.88
CSMD3-202ENST00000339701 HES6Q96HZ4 224 aa3.31□□□□□ -1.88
CSMD3-202ENST00000339701 NSL1Q96IY1 281 aa3.31□□□□□ -1.88
CSMD3-202ENST00000339701 ZIM3Q96PE6 472 aa3.31□□□□□ -1.88
CSMD3-202ENST00000339701 AGPAT4Q9NRZ5 378 aa3.31□□□□□ -1.88
CSMD3-202ENST00000339701 MYRFQ9Y2G1 1151 aa3.31□□□□□ -1.88
CSMD3-202ENST00000339701 TTC3P53804 2025 aa3.31□□□□□ -1.88
CSMD3-202ENST00000339701 ROBO3Q96MS0 1386 aa3.31□□□□□ -1.88
CSMD3-202ENST00000339701 ARID2Q68CP9 1835 aa3.31□□□□□ -1.88
CSMD3-202ENST00000339701 ADAMTSL1Q8N6G6 1762 aa3.31□□□□□ -1.88
CSMD3-202ENST00000339701 HTR3EA5X5Y0 456 aa3.31□□□□□ -1.88
CSMD3-202ENST00000339701 HACD1B0YJ81 288 aa3.31□□□□□ -1.88
CSMD3-202ENST00000339701 DNALI1O14645 258 aaPredicted RBP3.31□□□□□ -1.88
CSMD3-202ENST00000339701 MRPS14O60783 128 aaKnown RBP3.31□□□□□ -1.88
CSMD3-202ENST00000339701 ABHD2P08910 425 aa3.31□□□□□ -1.88
CSMD3-202ENST00000339701 FAM163BP0C2L3 166 aa3.31□□□□□ -1.88
CSMD3-202ENST00000339701 FAM58BPP0C7Q3 252 aa3.31□□□□□ -1.88
CSMD3-202ENST00000339701 PRKAR1AP10644 381 aa3.31□□□□□ -1.88
CSMD3-202ENST00000339701 PSKH1P11801 424 aa3.31□□□□□ -1.88
CSMD3-202ENST00000339701 KCNA3P22001 575 aa3.31□□□□□ -1.88
CSMD3-202ENST00000339701 BCAT1P54687 386 aa3.31□□□□□ -1.88
CSMD3-202ENST00000339701 NR1D2Q14995 579 aa3.31□□□□□ -1.88
CSMD3-202ENST00000339701 VWA2Q5GFL6 755 aa3.31□□□□□ -1.88
CSMD3-202ENST00000339701 ATXN7L2Q5T6C5 722 aaPredicted RBP3.31□□□□□ -1.88
CSMD3-202ENST00000339701 USP53Q70EK8 1073 aa3.31□□□□□ -1.88
CSMD3-202ENST00000339701 ATG9AQ7Z3C6 839 aa3.31□□□□□ -1.88
CSMD3-202ENST00000339701 CHERPQ8IWX8 916 aaKnown RBP3.31□□□□□ -1.88
CSMD3-202ENST00000339701 KATNAL2Q8IYT4 538 aa3.31□□□□□ -1.88
CSMD3-202ENST00000339701 PACRGLQ8N7B6 248 aa3.31□□□□□ -1.88
CSMD3-202ENST00000339701 SLC7A14Q8TBB6 771 aa3.31□□□□□ -1.88
CSMD3-202ENST00000339701 PRCCQ92733 491 aaPredicted RBP3.31□□□□□ -1.88
CSMD3-202ENST00000339701 KCNJ9Q92806 393 aa3.31□□□□□ -1.88
CSMD3-202ENST00000339701 ECSITQ9BQ95 431 aa3.31□□□□□ -1.88
CSMD3-202ENST00000339701 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP3.31□□□□□ -1.88
CSMD3-202ENST00000339701 SLC6A15Q9H2J7 730 aa3.31□□□□□ -1.88
CSMD3-202ENST00000339701 DPH5Q9H2P9 285 aa3.31□□□□□ -1.88
CSMD3-202ENST00000339701 SP140LQ9H930 580 aa3.31□□□□□ -1.88
CSMD3-202ENST00000339701 CDKN2AIPQ9NXV6 580 aaPredicted RBP3.31□□□□□ -1.88
CSMD3-202ENST00000339701 FNIP2Q9P278 1114 aa3.31□□□□□ -1.88
CSMD3-202ENST00000339701 MRPS33Q9Y291 106 aaKnown RBP3.31□□□□□ -1.88
CSMD3-202ENST00000339701 PCDHGB5Q9Y5G0 923 aa3.31□□□□□ -1.88
CSMD3-202ENST00000339701 BCLAF3A2AJT9 711 aaKnown RBP3.31□□□□□ -1.88
CSMD3-202ENST00000339701 ARVCFO00192 962 aa3.31□□□□□ -1.88
CSMD3-202ENST00000339701 C1RP00736 705 aa3.31□□□□□ -1.88
CSMD3-202ENST00000339701 ANXA5P08758 320 aa3.31□□□□□ -1.88
CSMD3-202ENST00000339701 PSMA1P25786 263 aaKnown RBP3.31□□□□□ -1.88
CSMD3-202ENST00000339701 PRDX6P30041 224 aa3.31□□□□□ -1.88
CSMD3-202ENST00000339701 CASP4P49662 377 aa3.31□□□□□ -1.88
CSMD3-202ENST00000339701 SPOCK1Q08629 439 aa3.31□□□□□ -1.88
CSMD3-202ENST00000339701 TIGD2Q4W5G0 525 aa3.31□□□□□ -1.88
CSMD3-202ENST00000339701 MANEAQ5SRI9 462 aa3.31□□□□□ -1.88
CSMD3-202ENST00000339701 SCARA3Q6AZY7 606 aa3.31□□□□□ -1.88
CSMD3-202ENST00000339701 GALNT15Q8N3T1 639 aa3.31□□□□□ -1.88
CSMD3-202ENST00000339701 TEX19Q8NA77 164 aa3.31□□□□□ -1.88
CSMD3-202ENST00000339701 TCEANC2Q96MN5 208 aa3.31□□□□□ -1.88
CSMD3-202ENST00000339701 SLC38A2Q96QD8 506 aa3.31□□□□□ -1.88
CSMD3-202ENST00000339701 STRBPQ96SI9 672 aaKnown RBP3.31□□□□□ -1.88
CSMD3-202ENST00000339701 ZNF184Q99676 751 aaPredicted RBP3.31□□□□□ -1.88
CSMD3-202ENST00000339701 ERP44Q9BS26 406 aa3.31□□□□□ -1.88
CSMD3-202ENST00000339701 ISCUQ9H1K1 167 aa3.31□□□□□ -1.88
CSMD3-202ENST00000339701 EHD4Q9H223 541 aa3.31□□□□□ -1.88
CSMD3-202ENST00000339701 OSGEPL1Q9H4B0 414 aa3.31□□□□□ -1.88
CSMD3-202ENST00000339701 LMBRD1Q9NUN5 540 aa3.31□□□□□ -1.88
CSMD3-202ENST00000339701 MRPL39Q9NYK5 338 aaKnown RBP3.31□□□□□ -1.88
CSMD3-202ENST00000339701 MED11Q9P086 117 aa3.31□□□□□ -1.88
CSMD3-202ENST00000339701 AASSQ9UDR5 926 aa3.31□□□□□ -1.88
CSMD3-202ENST00000339701 CA14Q9ULX7 337 aa3.31□□□□□ -1.88
CSMD3-202ENST00000339701 ZNF232Q9UNY5 417 aa3.31□□□□□ -1.88
CSMD3-202ENST00000339701 WDR37Q9Y2I8 494 aa3.31□□□□□ -1.88
CSMD3-202ENST00000339701 TCF20Q9UGU0 1960 aaKnown RBP3.31□□□□□ -1.88
CSMD3-202ENST00000339701 TDRD6O60522 2096 aaKnown RBP3.31□□□□□ -1.88
CSMD3-202ENST00000339701 F5H5T6 163 aa3.31□□□□□ -1.88
CSMD3-202ENST00000339701 F8W810 466 aa3.31□□□□□ -1.88
CSMD3-202ENST00000339701 ZNF862O60290 1169 aa3.31□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms