RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 SLC30A8Q8IWU4 369 aa14.37□□□□□ -0.11
COL7A1-201ENST00000328333 FAM47BQ8NA70 645 aa14.37□□□□□ -0.11
COL7A1-201ENST00000328333 TLR8Q9NR97 1041 aaKnown RBP14.37□□□□□ -0.11
COL7A1-201ENST00000328333 HLA-DQA2P01906 255 aa14.37□□□□□ -0.11
COL7A1-201ENST00000328333 MBTD1Q05BQ5 628 aa14.37□□□□□ -0.11
COL7A1-201ENST00000328333 E2F2Q14209 437 aa14.37□□□□□ -0.11
COL7A1-201ENST00000328333 LIN52Q52LA3 116 aa14.37□□□□□ -0.11
COL7A1-201ENST00000328333 ZNF484Q5JVG2 852 aa14.37□□□□□ -0.11
COL7A1-201ENST00000328333 METTL21CQ5VZV1 264 aa14.37□□□□□ -0.11
COL7A1-201ENST00000328333 ANO7Q6IWH7 933 aa14.37□□□□□ -0.11
COL7A1-201ENST00000328333 DIRAS2Q96HU8 199 aa14.37□□□□□ -0.11
COL7A1-201ENST00000328333 DPP7Q9UHL4 492 aa14.37□□□□□ -0.11
COL7A1-201ENST00000328333 ASCC3Q8N3C0 2202 aaKnown RBP14.37□□□□□ -0.11
COL7A1-201ENST00000328333 ITGA10O75578 1167 aa14.37□□□□□ -0.11
COL7A1-201ENST00000328333 CACNB2Q08289 660 aaPredicted RBP14.37□□□□□ -0.11
COL7A1-201ENST00000328333 MED22Q15528 200 aa14.37□□□□□ -0.11
COL7A1-201ENST00000328333 HTRA1Q92743 480 aa14.37□□□□□ -0.11
COL7A1-201ENST00000328333 TAS2R1Q9NYW7 299 aa14.37□□□□□ -0.11
COL7A1-201ENST00000328333 ZNF180Q9UJW8 692 aa14.37□□□□□ -0.11
COL7A1-201ENST00000328333 DCKP27707 260 aa14.37□□□□□ -0.11
COL7A1-201ENST00000328333 CRATP43155 626 aa14.37□□□□□ -0.11
COL7A1-201ENST00000328333 SPATS1Q496A3 300 aa14.37□□□□□ -0.11
COL7A1-201ENST00000328333 LRRC69Q6ZNQ3 347 aa14.37□□□□□ -0.11
COL7A1-201ENST00000328333 ROPN1LQ96C74 230 aa14.37□□□□□ -0.11
COL7A1-201ENST00000328333 GULP1Q9UBP9 304 aa14.37□□□□□ -0.11
COL7A1-201ENST00000328333 SPEF1Q9Y4P9 236 aa14.37□□□□□ -0.11
COL7A1-201ENST00000328333 PIGBOS1A0A0B4J2F0 54 aa14.37□□□□□ -0.11
COL7A1-201ENST00000328333 ITGA3P26006 1051 aa14.37□□□□□ -0.11
COL7A1-201ENST00000328333 ALDH7A1P49419 539 aaKnown RBP14.37□□□□□ -0.11
COL7A1-201ENST00000328333 ELAVL2Q12926 359 aaKnown RBP14.37□□□□□ -0.11
COL7A1-201ENST00000328333 TRPS1Q9UHF7 1281 aa14.37□□□□□ -0.11
COL7A1-201ENST00000328333 RAB23Q9ULC3 237 aa14.37□□□□□ -0.11
COL7A1-201ENST00000328333 FAM186AA6NE01 2351 aa14.36□□□□□ -0.11
COL7A1-201ENST00000328333 BTN3A1O00481 513 aa14.36□□□□□ -0.11
COL7A1-201ENST00000328333 OR5F1O95221 314 aa14.36□□□□□ -0.11
COL7A1-201ENST00000328333 CRY1Q16526 586 aa14.36□□□□□ -0.11
COL7A1-201ENST00000328333 FSCN1Q16658 493 aaKnown RBP14.36□□□□□ -0.11
COL7A1-201ENST00000328333 PFKFB4Q16877 469 aa14.36□□□□□ -0.11
COL7A1-201ENST00000328333 LRRC19Q9H756 370 aa14.36□□□□□ -0.11
COL7A1-201ENST00000328333 INTS7Q9NVH2 962 aaKnown RBP14.36□□□□□ -0.11
COL7A1-201ENST00000328333 PIGNO95427 931 aa14.36□□□□□ -0.11
COL7A1-201ENST00000328333 CBFBQ13951 182 aa14.36□□□□□ -0.11
COL7A1-201ENST00000328333 SPESP1Q6UW49 350 aa14.36□□□□□ -0.11
COL7A1-201ENST00000328333 GLT6D1Q7Z4J2 308 aa14.36□□□□□ -0.11
COL7A1-201ENST00000328333 RIT1Q92963 219 aa14.36□□□□□ -0.11
COL7A1-201ENST00000328333 TMEM176AQ96HP8 235 aa14.36□□□□□ -0.11
COL7A1-201ENST00000328333 FNDC11Q9BVV2 318 aa14.36□□□□□ -0.11
COL7A1-201ENST00000328333 FRMPD4Q14CM0 1322 aa14.36□□□□□ -0.11
COL7A1-201ENST00000328333 DRD4P21917 467 aa14.36□□□□□ -0.11
COL7A1-201ENST00000328333 PLCL1Q15111 1095 aa14.36□□□□□ -0.11
COL7A1-201ENST00000328333 PTPAQ15257 358 aa14.36□□□□□ -0.11
COL7A1-201ENST00000328333 TTMPQ5BVD1 217 aa14.36□□□□□ -0.11
COL7A1-201ENST00000328333 MPZL3Q6UWV2 235 aa14.36□□□□□ -0.11
COL7A1-201ENST00000328333 DNAJC14Q6Y2X3 702 aaPredicted RBP14.36□□□□□ -0.11
COL7A1-201ENST00000328333 SLC44A5Q8NCS7 719 aa14.36□□□□□ -0.11
COL7A1-201ENST00000328333 PCP4L1A6NKN8 68 aa14.36□□□□□ -0.11
COL7A1-201ENST00000328333 RBAK-RBAKDNI3L0D1 243 aa14.36□□□□□ -0.11
COL7A1-201ENST00000328333 FOXR2Q6PJQ5 311 aa14.36□□□□□ -0.11
COL7A1-201ENST00000328333 ILDR2Q71H61 639 aa14.36□□□□□ -0.11
COL7A1-201ENST00000328333 MKL1Q969V6 931 aa14.36□□□□□ -0.11
COL7A1-201ENST00000328333 NINJ2Q9NZG7 142 aa14.36□□□□□ -0.11
COL7A1-201ENST00000328333 PRMT3O60678 531 aa14.36□□□□□ -0.11
COL7A1-201ENST00000328333 PIK3CBP42338 1070 aa14.36□□□□□ -0.11
COL7A1-201ENST00000328333 SSU72Q9NP77 194 aaKnown RBP14.36□□□□□ -0.11
COL7A1-201ENST00000328333 ARL15Q9NXU5 204 aa14.36□□□□□ -0.11
COL7A1-201ENST00000328333 ZNF638Q14966 1978 aaKnown RBP14.36□□□□□ -0.11
COL7A1-201ENST00000328333 SREBF1P36956 1147 aa14.36□□□□□ -0.11
COL7A1-201ENST00000328333 PKNOX1P55347 436 aa14.36□□□□□ -0.11
COL7A1-201ENST00000328333 USF2Q15853 346 aaPredicted RBP14.36□□□□□ -0.11
COL7A1-201ENST00000328333 PGBD2Q6P3X8 592 aa14.36□□□□□ -0.11
COL7A1-201ENST00000328333 WDR59Q6PJI9 974 aa14.36□□□□□ -0.11
COL7A1-201ENST00000328333 HHIPL2Q6UWX4 724 aa14.36□□□□□ -0.11
COL7A1-201ENST00000328333 BAP1Q92560 729 aa14.36□□□□□ -0.11
COL7A1-201ENST00000328333 MGME1Q9BQP7 344 aa14.36□□□□□ -0.11
COL7A1-201ENST00000328333 PI4K2AQ9BTU6 479 aa14.36□□□□□ -0.11
COL7A1-201ENST00000328333 ASMTP46597 345 aa14.36□□□□□ -0.11
COL7A1-201ENST00000328333 IL1RAPQ9NPH3 570 aa14.36□□□□□ -0.11
COL7A1-201ENST00000328333 XPR1Q9UBH6 696 aa14.36□□□□□ -0.11
COL7A1-201ENST00000328333 TBC1D24Q9ULP9 559 aa14.36□□□□□ -0.11
COL7A1-201ENST00000328333 PLA2G4CQ9UP65 541 aa14.36□□□□□ -0.11
COL7A1-201ENST00000328333 ATP6V1G1O75348 118 aa14.35□□□□□ -0.11
COL7A1-201ENST00000328333 SLC22A3O75751 556 aa14.35□□□□□ -0.11
COL7A1-201ENST00000328333 FTH1P02794 183 aa14.35□□□□□ -0.11
COL7A1-201ENST00000328333 RHOAP61586 193 aa14.35□□□□□ -0.11
COL7A1-201ENST00000328333 VPS26BQ4G0F5 336 aa14.35□□□□□ -0.11
COL7A1-201ENST00000328333 RETSATQ6NUM9 610 aa14.35□□□□□ -0.11
COL7A1-201ENST00000328333 ZNF548Q8NEK5 533 aaPredicted RBP14.35□□□□□ -0.11
COL7A1-201ENST00000328333 DQX1Q8TE96 717 aaKnown RBP14.35□□□□□ -0.11
COL7A1-201ENST00000328333 HMGXB4Q9UGU5 601 aa14.35□□□□□ -0.11
COL7A1-201ENST00000328333 FADS3Q9Y5Q0 445 aa14.35□□□□□ -0.11
COL7A1-201ENST00000328333 ADAM8P78325 824 aa14.35□□□□□ -0.11
COL7A1-201ENST00000328333 SLC4A5Q9BY07 1137 aa14.35□□□□□ -0.11
COL7A1-201ENST00000328333 SLC22A4Q9H015 551 aa14.35□□□□□ -0.11
COL7A1-201ENST00000328333 LMAN2LQ9H0V9 348 aa14.35□□□□□ -0.11
COL7A1-201ENST00000328333 H3BNH8 94 aa14.35□□□□□ -0.11
COL7A1-201ENST00000328333 WRBO00258 174 aa14.35□□□□□ -0.11
COL7A1-201ENST00000328333 NDUFB5O43674 189 aa14.35□□□□□ -0.11
COL7A1-201ENST00000328333 GRIA4P48058 902 aa14.35□□□□□ -0.11
COL7A1-201ENST00000328333 PTCHD4Q6ZW05 846 aa14.35□□□□□ -0.11
COL7A1-201ENST00000328333 PCDH12Q9NPG4 1184 aa14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms