RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 CARNMT1Q8N4J0 409 aa11.59□□□□□ -0.55
VPS39-201ENST00000318006 ZFAND2BQ8WV99 257 aa11.59□□□□□ -0.55
VPS39-201ENST00000318006 HSFY1Q96LI6 401 aa11.59□□□□□ -0.55
VPS39-201ENST00000318006 VAT1Q99536 393 aa11.59□□□□□ -0.55
VPS39-201ENST00000318006 PRDM16Q9HAZ2 1276 aa11.59□□□□□ -0.55
VPS39-201ENST00000318006 PRKAG3Q9UGI9 489 aa11.59□□□□□ -0.55
VPS39-201ENST00000318006 LGALS13Q9UHV8 139 aa11.59□□□□□ -0.55
VPS39-201ENST00000318006 IGKV6D-41A0A0C4DH26 115 aa11.58□□□□□ -0.55
VPS39-201ENST00000318006 BCLAF3A2AJT9 711 aaKnown RBP11.58□□□□□ -0.55
VPS39-201ENST00000318006 YDJCA8MPS7 323 aa11.58□□□□□ -0.55
VPS39-201ENST00000318006 STK25O00506 426 aa11.58□□□□□ -0.55
VPS39-201ENST00000318006 CCNT2O60583 730 aaKnown RBP11.58□□□□□ -0.55
VPS39-201ENST00000318006 AVILO75366 819 aa11.58□□□□□ -0.55
VPS39-201ENST00000318006 PIAS1O75925 651 aa11.58□□□□□ -0.55
VPS39-201ENST00000318006 SERPINF2P08697 491 aa11.58□□□□□ -0.55
VPS39-201ENST00000318006 PTPN1P18031 435 aaKnown RBP11.58□□□□□ -0.55
VPS39-201ENST00000318006 PAICSP22234 425 aaKnown RBP11.58□□□□□ -0.55
VPS39-201ENST00000318006 SLC5A3P53794 718 aa11.58□□□□□ -0.55
VPS39-201ENST00000318006 DEPDC4Q8N2C3 294 aa11.58□□□□□ -0.55
VPS39-201ENST00000318006 ZNF384Q8TF68 577 aa11.58□□□□□ -0.55
VPS39-201ENST00000318006 WNT8BQ93098 351 aa11.58□□□□□ -0.55
VPS39-201ENST00000318006 POP5Q969H6 163 aaKnown RBP11.58□□□□□ -0.55
VPS39-201ENST00000318006 CDK5RAP1Q96SZ6 601 aaKnown RBP11.58□□□□□ -0.55
VPS39-201ENST00000318006 CIB1Q99828 191 aa11.58□□□□□ -0.55
VPS39-201ENST00000318006 EBNA1BP2Q99848 306 aaKnown RBP11.58□□□□□ -0.55
VPS39-201ENST00000318006 IKZF4Q9H2S9 585 aa11.58□□□□□ -0.55
VPS39-201ENST00000318006 ZNF222Q9UK12 451 aa11.58□□□□□ -0.55
VPS39-201ENST00000318006 WASF2Q9Y6W5 498 aa11.58□□□□□ -0.55
VPS39-201ENST00000318006 SLC15A5A6NIM6 579 aa11.58□□□□□ -0.56
VPS39-201ENST00000318006 LOC110117498-PIK3R3F6TDL0 507 aa11.58□□□□□ -0.56
VPS39-201ENST00000318006 CBX4O00257 560 aa11.58□□□□□ -0.56
VPS39-201ENST00000318006 DDX3YO15523 660 aaKnown RBP11.58□□□□□ -0.56
VPS39-201ENST00000318006 TIPRLO75663 272 aa11.58□□□□□ -0.56
VPS39-201ENST00000318006 SERPINA1P01009 418 aa11.58□□□□□ -0.56
VPS39-201ENST00000318006 ITGALP20701 1170 aa11.58□□□□□ -0.56
VPS39-201ENST00000318006 HALP42357 657 aa11.58□□□□□ -0.56
VPS39-201ENST00000318006 CDK9P50750 372 aaKnown RBP11.58□□□□□ -0.56
VPS39-201ENST00000318006 RHOAP61586 193 aa11.58□□□□□ -0.56
VPS39-201ENST00000318006 STX4Q12846 297 aa11.58□□□□□ -0.56
VPS39-201ENST00000318006 ATP13A4Q4VNC1 1196 aa11.58□□□□□ -0.56
VPS39-201ENST00000318006 FAM171A1Q5VUB5 890 aa11.58□□□□□ -0.56
VPS39-201ENST00000318006 LIPMQ5VYY2 423 aa11.58□□□□□ -0.56
VPS39-201ENST00000318006 THOC7Q6I9Y2 204 aaKnown RBP11.58□□□□□ -0.56
VPS39-201ENST00000318006 BBS12Q6ZW61 710 aa11.58□□□□□ -0.56
VPS39-201ENST00000318006 C16orf62Q7Z3J2 963 aa11.58□□□□□ -0.56
VPS39-201ENST00000318006 TFAP2DQ7Z6R9 452 aa11.58□□□□□ -0.56
VPS39-201ENST00000318006 C10orf107Q8IVU9 208 aa11.58□□□□□ -0.56
VPS39-201ENST00000318006 SPOCK2Q92563 424 aa11.58□□□□□ -0.56
VPS39-201ENST00000318006 PNPLA8Q9NP80 782 aa11.58□□□□□ -0.56
VPS39-201ENST00000318006 IKZF3Q9UKT9 509 aa11.58□□□□□ -0.56
VPS39-201ENST00000318006 HES2Q9Y543 173 aa11.58□□□□□ -0.56
VPS39-201ENST00000318006 A0A0A0MRY4 1105 aa11.58□□□□□ -0.56
VPS39-201ENST00000318006 RGS14O43566 566 aa11.58□□□□□ -0.56
VPS39-201ENST00000318006 SIN3BO75182 1162 aa11.58□□□□□ -0.56
VPS39-201ENST00000318006 CST1P01037 141 aa11.58□□□□□ -0.56
VPS39-201ENST00000318006 LTA4HP09960 611 aaKnown RBP11.58□□□□□ -0.56
VPS39-201ENST00000318006 PRKAR1AP10644 381 aa11.58□□□□□ -0.56
VPS39-201ENST00000318006 NUMBP49757 651 aa11.58□□□□□ -0.56
VPS39-201ENST00000318006 NPY5RQ15761 445 aa11.58□□□□□ -0.56
VPS39-201ENST00000318006 EEF1DP3Q658K8 133 aa11.58□□□□□ -0.56
VPS39-201ENST00000318006 UNC5AQ6ZN44 842 aa11.58□□□□□ -0.56
VPS39-201ENST00000318006 MILR1Q7Z6M3 343 aa11.58□□□□□ -0.56
VPS39-201ENST00000318006 SCAIQ8N9R8 606 aa11.58□□□□□ -0.56
VPS39-201ENST00000318006 LEMD2Q8NC56 503 aa11.58□□□□□ -0.56
VPS39-201ENST00000318006 SPATA13Q96N96 652 aa11.58□□□□□ -0.56
VPS39-201ENST00000318006 ADGRE3Q9BY15 652 aa11.58□□□□□ -0.56
VPS39-201ENST00000318006 RNF19AQ9NV58 838 aa11.58□□□□□ -0.56
VPS39-201ENST00000318006 PLLPQ9Y342 182 aa11.58□□□□□ -0.56
VPS39-201ENST00000318006 CCDC162PA2VCL2 907 aa11.58□□□□□ -0.56
VPS39-201ENST00000318006 TFECO14948 347 aaPredicted RBP11.58□□□□□ -0.56
VPS39-201ENST00000318006 USP17L7P0C7H9 530 aa11.58□□□□□ -0.56
VPS39-201ENST00000318006 BDNFP23560 247 aa11.58□□□□□ -0.56
VPS39-201ENST00000318006 YWHAQP27348 245 aa11.58□□□□□ -0.56
VPS39-201ENST00000318006 ATN1P54259 1190 aaPredicted RBP11.58□□□□□ -0.56
VPS39-201ENST00000318006 EPHB3P54753 998 aa11.58□□□□□ -0.56
VPS39-201ENST00000318006 CSNK2BP67870 215 aa11.58□□□□□ -0.56
VPS39-201ENST00000318006 MTA1Q13330 715 aa11.58□□□□□ -0.56
VPS39-201ENST00000318006 FGD3Q5JSP0 725 aa11.58□□□□□ -0.56
VPS39-201ENST00000318006 RAB43Q86YS6 212 aa11.58□□□□□ -0.56
VPS39-201ENST00000318006 DENND6AQ8IWF6 608 aa11.58□□□□□ -0.56
VPS39-201ENST00000318006 IL22Q9GZX6 179 aa11.58□□□□□ -0.56
VPS39-201ENST00000318006 TMEM216Q9P0N5 145 aa11.58□□□□□ -0.56
VPS39-201ENST00000318006 hCG_1818297A0A087WSY0 165 aa11.57□□□□□ -0.56
VPS39-201ENST00000318006 PCP4L1A6NKN8 68 aa11.57□□□□□ -0.56
VPS39-201ENST00000318006 B4GALT5O43286 388 aa11.57□□□□□ -0.56
VPS39-201ENST00000318006 ENDOD1O94919 500 aa11.57□□□□□ -0.56
VPS39-201ENST00000318006 SMIM10L2AP0DMW4 78 aa11.57□□□□□ -0.56
VPS39-201ENST00000318006 SMIM10L2BP0DMW5 78 aa11.57□□□□□ -0.56
VPS39-201ENST00000318006 ABCG1P45844 678 aa11.57□□□□□ -0.56
VPS39-201ENST00000318006 CLK2P49760 499 aaKnown RBP11.57□□□□□ -0.56
VPS39-201ENST00000318006 AQP4P55087 323 aa11.57□□□□□ -0.56
VPS39-201ENST00000318006 WSCD1Q658N2 575 aa11.57□□□□□ -0.56
VPS39-201ENST00000318006 FAM183BPQ6ZVS7 135 aa11.57□□□□□ -0.56
VPS39-201ENST00000318006 GRPEL2Q8TAA5 225 aa11.57□□□□□ -0.56
VPS39-201ENST00000318006 ADAM2Q99965 735 aa11.57□□□□□ -0.56
VPS39-201ENST00000318006 HGH1Q9BTY7 390 aa11.57□□□□□ -0.56
VPS39-201ENST00000318006 TKTL2Q9H0I9 626 aa11.57□□□□□ -0.56
VPS39-201ENST00000318006 SSU72Q9NP77 194 aaKnown RBP11.57□□□□□ -0.56
VPS39-201ENST00000318006 FAM53CQ9NYF3 392 aa11.57□□□□□ -0.56
VPS39-201ENST00000318006 RIPK3Q9Y572 518 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms