RNA–Protein interactions for RNA: ENST00000317677.9

CPNE1-201, Transcript of copine 1, humanhuman

TSL 1 (best) BASIC

Gene CPNE1, Length 1,961 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-201ENST00000317677 CASS4Q9NQ75 786 aa13.19□□□□□ -0.3
CPNE1-201ENST00000317677 MOCS1Q9NZB8 636 aa13.19□□□□□ -0.3
CPNE1-201ENST00000317677 SLC17A6Q9P2U8 582 aa13.19□□□□□ -0.3
CPNE1-201ENST00000317677 ZNF711Q9Y462 761 aa13.19□□□□□ -0.3
CPNE1-201ENST00000317677 YIPF1Q9Y548 306 aa13.19□□□□□ -0.3
CPNE1-201ENST00000317677 NUMBLQ9Y6R0 609 aa13.19□□□□□ -0.3
CPNE1-201ENST00000317677 ZNF840PA6NDX5 716 aa13.18□□□□□ -0.3
CPNE1-201ENST00000317677 ARHGAP42A6NI28 874 aa13.18□□□□□ -0.3
CPNE1-201ENST00000317677 DRGXA6NNA5 263 aa13.18□□□□□ -0.3
CPNE1-201ENST00000317677 TGDSO95455 350 aa13.18□□□□□ -0.3
CPNE1-201ENST00000317677 ESRRAP11474 423 aaPredicted RBP13.18□□□□□ -0.3
CPNE1-201ENST00000317677 RHOQP17081 205 aa13.18□□□□□ -0.3
CPNE1-201ENST00000317677 TUFMP49411 452 aaKnown RBP13.18□□□□□ -0.3
CPNE1-201ENST00000317677 COG7P83436 770 aa13.18□□□□□ -0.3
CPNE1-201ENST00000317677 SMAD3P84022 425 aaKnown RBP13.18□□□□□ -0.3
CPNE1-201ENST00000317677 CREB5Q02930 508 aa13.18□□□□□ -0.3
CPNE1-201ENST00000317677 RELAQ04206 551 aa13.18□□□□□ -0.3
CPNE1-201ENST00000317677 RING1Q06587 406 aa13.18□□□□□ -0.3
CPNE1-201ENST00000317677 PDK3Q15120 406 aa13.18□□□□□ -0.3
CPNE1-201ENST00000317677 ANKRD20A4Q4UJ75 823 aa13.18□□□□□ -0.3
CPNE1-201ENST00000317677 FAM109BQ6ICB4 259 aaPredicted RBP13.18□□□□□ -0.3
CPNE1-201ENST00000317677 KYAT3Q6YP21 454 aaKnown RBP13.18□□□□□ -0.3
CPNE1-201ENST00000317677 OTOP2Q7RTS6 562 aa13.18□□□□□ -0.3
CPNE1-201ENST00000317677 PATL1Q86TB9 770 aaKnown RBP13.18□□□□□ -0.3
CPNE1-201ENST00000317677 TREML1Q86YW5 311 aa13.18□□□□□ -0.3
CPNE1-201ENST00000317677 UMODL1-AS1Q8N2C9 162 aa13.18□□□□□ -0.3
CPNE1-201ENST00000317677 PPM1NQ8N819 430 aa13.18□□□□□ -0.3
CPNE1-201ENST00000317677 SPATA22Q8NHS9 363 aa13.18□□□□□ -0.3
CPNE1-201ENST00000317677 GSDMBQ8TAX9 411 aa13.18□□□□□ -0.3
CPNE1-201ENST00000317677 WBP2Q969T9 261 aa13.18□□□□□ -0.3
CPNE1-201ENST00000317677 SKA1Q96BD8 255 aa13.18□□□□□ -0.3
CPNE1-201ENST00000317677 TMEM169Q96HH4 297 aa13.18□□□□□ -0.3
CPNE1-201ENST00000317677 SERAC1Q96JX3 654 aa13.18□□□□□ -0.3
CPNE1-201ENST00000317677 VAT1Q99536 393 aa13.18□□□□□ -0.3
CPNE1-201ENST00000317677 KLF6Q99612 283 aaPredicted RBP13.18□□□□□ -0.3
CPNE1-201ENST00000317677 IL23AQ9NPF7 189 aa13.18□□□□□ -0.3
CPNE1-201ENST00000317677 TMEM248Q9NWD8 314 aa13.18□□□□□ -0.3
CPNE1-201ENST00000317677 UBP1Q9NZI7 540 aa13.18□□□□□ -0.3
CPNE1-201ENST00000317677 PPARGC1AQ9UBK2 798 aaKnown RBP13.18□□□□□ -0.3
CPNE1-201ENST00000317677 GRID1Q9ULK0 1009 aa13.18□□□□□ -0.3
CPNE1-201ENST00000317677 HMX2A2RU54 273 aa13.18□□□□□ -0.3
CPNE1-201ENST00000317677 SDR42E2A6NKP2 422 aa13.18□□□□□ -0.3
CPNE1-201ENST00000317677 TRDMT1O14717 391 aaKnown RBP13.18□□□□□ -0.3
CPNE1-201ENST00000317677 MATN3O15232 486 aa13.18□□□□□ -0.3
CPNE1-201ENST00000317677 TRMUO75648 421 aaKnown RBP13.18□□□□□ -0.3
CPNE1-201ENST00000317677 CIB2O75838 187 aa13.18□□□□□ -0.3
CPNE1-201ENST00000317677 TM7SF2O76062 418 aa13.18□□□□□ -0.3
CPNE1-201ENST00000317677 ALDH1A2O94788 518 aa13.18□□□□□ -0.3
CPNE1-201ENST00000317677 HLA-DQB2P05538 268 aa13.18□□□□□ -0.3
CPNE1-201ENST00000317677 LAG3P18627 525 aa13.18□□□□□ -0.3
CPNE1-201ENST00000317677 DNAJB2P25686 324 aa13.18□□□□□ -0.3
CPNE1-201ENST00000317677 RPA3P35244 121 aaPredicted RBP13.18□□□□□ -0.3
CPNE1-201ENST00000317677 SLC1A5Q15758 541 aa13.18□□□□□ -0.3
CPNE1-201ENST00000317677 MAP7D1Q3KQU3 841 aa13.18□□□□□ -0.3
CPNE1-201ENST00000317677 THOC7Q6I9Y2 204 aaKnown RBP13.18□□□□□ -0.3
CPNE1-201ENST00000317677 CES3Q6UWW8 571 aa13.18□□□□□ -0.3
CPNE1-201ENST00000317677 PACS1Q6VY07 963 aa13.18□□□□□ -0.3
CPNE1-201ENST00000317677 DDX53Q86TM3 631 aaKnown RBP13.18□□□□□ -0.3
CPNE1-201ENST00000317677 DDI1Q8WTU0 396 aa13.18□□□□□ -0.3
CPNE1-201ENST00000317677 SPOCK2Q92563 424 aa13.18□□□□□ -0.3
CPNE1-201ENST00000317677 HMCESQ96FZ2 354 aa13.18□□□□□ -0.3
CPNE1-201ENST00000317677 FCRL3Q96P31 734 aaPredicted RBP13.18□□□□□ -0.3
CPNE1-201ENST00000317677 APOL2Q9BQE5 337 aa13.18□□□□□ -0.3
CPNE1-201ENST00000317677 ZYG11BQ9C0D3 744 aa13.18□□□□□ -0.3
CPNE1-201ENST00000317677 CYP4F11Q9HBI6 524 aa13.18□□□□□ -0.3
CPNE1-201ENST00000317677 PLGRKTQ9HBL7 147 aa13.18□□□□□ -0.3
CPNE1-201ENST00000317677 SPG21Q9NZD8 308 aa13.18□□□□□ -0.3
CPNE1-201ENST00000317677 ZNF180Q9UJW8 692 aa13.18□□□□□ -0.3
CPNE1-201ENST00000317677 HBS1LQ9Y450 684 aaKnown RBP13.18□□□□□ -0.3
CPNE1-201ENST00000317677 SZT2Q5T011 3432 aa13.17□□□□□ -0.3
CPNE1-201ENST00000317677 MAGEB3O15480 346 aa13.17□□□□□ -0.3
CPNE1-201ENST00000317677 COCHO43405 550 aa13.17□□□□□ -0.3
CPNE1-201ENST00000317677 DENRO43583 198 aaKnown RBP13.17□□□□□ -0.3
CPNE1-201ENST00000317677 LILRB3O75022 631 aa13.17□□□□□ -0.3
CPNE1-201ENST00000317677 CLPTM1O96005 669 aa13.17□□□□□ -0.3
CPNE1-201ENST00000317677 LAMA2P24043 3122 aaKnown RBP13.17□□□□□ -0.3
CPNE1-201ENST00000317677 SLC6A4P31645 630 aa13.17□□□□□ -0.3
CPNE1-201ENST00000317677 NIPAL4Q0D2K0 466 aa13.17□□□□□ -0.3
CPNE1-201ENST00000317677 RAB33AQ14088 237 aa13.17□□□□□ -0.3
CPNE1-201ENST00000317677 CCDC153Q494R4 210 aa13.17□□□□□ -0.3
CPNE1-201ENST00000317677 ZNF697Q5TEC3 545 aa13.17□□□□□ -0.3
CPNE1-201ENST00000317677 TPGS2Q68CL5 300 aa13.17□□□□□ -0.3
CPNE1-201ENST00000317677 ERI1Q8IV48 349 aaKnown RBP13.17□□□□□ -0.3
CPNE1-201ENST00000317677 MARVELD2Q8N4S9 558 aa13.17□□□□□ -0.3
CPNE1-201ENST00000317677 ZNF276Q8N554 614 aa13.17□□□□□ -0.3
CPNE1-201ENST00000317677 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP13.17□□□□□ -0.3
CPNE1-201ENST00000317677 SCAIQ8N9R8 606 aa13.17□□□□□ -0.3
CPNE1-201ENST00000317677 ZFP28Q8NHY6 868 aa13.17□□□□□ -0.3
CPNE1-201ENST00000317677 MYRFLQ96LU7 910 aa13.17□□□□□ -0.3
CPNE1-201ENST00000317677 CEP295NLQ96MC4 621 aa13.17□□□□□ -0.3
CPNE1-201ENST00000317677 BIRC8Q96P09 236 aa13.17□□□□□ -0.3
CPNE1-201ENST00000317677 MRPS26Q9BYN8 205 aaKnown RBP13.17□□□□□ -0.3
CPNE1-201ENST00000317677 KLHL4Q9C0H6 718 aa13.17□□□□□ -0.3
CPNE1-201ENST00000317677 C12orf65Q9H3J6 166 aaKnown RBP13.17□□□□□ -0.3
CPNE1-201ENST00000317677 HEY2Q9UBP5 337 aa13.17□□□□□ -0.3
CPNE1-201ENST00000317677 IPO11Q9UI26 975 aaKnown RBP13.17□□□□□ -0.3
CPNE1-201ENST00000317677 LAMA3Q16787 3333 aa13.16□□□□□ -0.3
CPNE1-201ENST00000317677 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.16□□□□□ -0.3
CPNE1-201ENST00000317677 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.16□□□□□ -0.3
CPNE1-201ENST00000317677 BOLA2-SMG1P6H3BVE0 249 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms