RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 CPB2Q96IY4 423 aa13.95□□□□□ -0.18
CSPG4-201ENST00000308508 SUPT20HL2P0C7V6 817 aa13.95□□□□□ -0.18
CSPG4-201ENST00000308508 THPOP40225 353 aa13.95□□□□□ -0.18
CSPG4-201ENST00000308508 BCORL1Q5H9F3 1711 aa13.95□□□□□ -0.18
CSPG4-201ENST00000308508 SLC26A2P50443 739 aa13.95□□□□□ -0.18
CSPG4-201ENST00000308508 RAB15P59190 212 aa13.95□□□□□ -0.18
CSPG4-201ENST00000308508 AMPD2Q01433 879 aa13.95□□□□□ -0.18
CSPG4-201ENST00000308508 PLD1Q13393 1074 aa13.95□□□□□ -0.18
CSPG4-201ENST00000308508 AUHQ13825 339 aaKnown RBP13.95□□□□□ -0.18
CSPG4-201ENST00000308508 STXBP5Q5T5C0 1151 aa13.95□□□□□ -0.18
CSPG4-201ENST00000308508 SPAG16Q8N0X2 631 aa13.95□□□□□ -0.18
CSPG4-201ENST00000308508 SLC34A3Q8N130 599 aa13.95□□□□□ -0.18
CSPG4-201ENST00000308508 BAP1Q92560 729 aa13.95□□□□□ -0.18
CSPG4-201ENST00000308508 C1GALT1C1Q96EU7 318 aa13.95□□□□□ -0.18
CSPG4-201ENST00000308508 REM1O75628 298 aa13.95□□□□□ -0.18
CSPG4-201ENST00000308508 TFRCP02786 760 aaKnown RBP13.95□□□□□ -0.18
CSPG4-201ENST00000308508 HMGCRP04035 888 aa13.95□□□□□ -0.18
CSPG4-201ENST00000308508 GNASQ5JWF2 1037 aa13.95□□□□□ -0.18
CSPG4-201ENST00000308508 SEPT12Q8IYM1 358 aa13.95□□□□□ -0.18
CSPG4-201ENST00000308508 LRRN4CLQ8ND94 238 aa13.95□□□□□ -0.18
CSPG4-201ENST00000308508 CST11Q9H112 138 aa13.95□□□□□ -0.18
CSPG4-201ENST00000308508 NECTIN3Q9NQS3 549 aa13.95□□□□□ -0.18
CSPG4-201ENST00000308508 PSMD13Q9UNM6 376 aa13.95□□□□□ -0.18
CSPG4-201ENST00000308508 NEO1Q92859 1461 aa13.95□□□□□ -0.18
CSPG4-201ENST00000308508 OPLAHO14841 1288 aa13.95□□□□□ -0.18
CSPG4-201ENST00000308508 ITGAVP06756 1048 aa13.95□□□□□ -0.18
CSPG4-201ENST00000308508 AMPD1P23109 780 aa13.95□□□□□ -0.18
CSPG4-201ENST00000308508 NT5DC1Q5TFE4 455 aa13.95□□□□□ -0.18
CSPG4-201ENST00000308508 ZNF280DQ6N043 979 aa13.95□□□□□ -0.18
CSPG4-201ENST00000308508 HIST2H2ABQ8IUE6 130 aaPredicted RBP13.95□□□□□ -0.18
CSPG4-201ENST00000308508 CLEC10AQ8IUN9 316 aa13.95□□□□□ -0.18
CSPG4-201ENST00000308508 DIRAS2Q96HU8 199 aa13.95□□□□□ -0.18
CSPG4-201ENST00000308508 PLCL2Q9UPR0 1127 aa13.95□□□□□ -0.18
CSPG4-201ENST00000308508 PRELID1Q9Y255 219 aa13.95□□□□□ -0.18
CSPG4-201ENST00000308508 A0A0A0MRY4 1105 aa13.95□□□□□ -0.18
CSPG4-201ENST00000308508 TTPAP49638 278 aa13.95□□□□□ -0.18
CSPG4-201ENST00000308508 SEPHS1P49903 392 aa13.95□□□□□ -0.18
CSPG4-201ENST00000308508 BCL2L1Q07817 233 aa13.95□□□□□ -0.18
CSPG4-201ENST00000308508 GPRIN3Q6ZVF9 776 aa13.95□□□□□ -0.18
CSPG4-201ENST00000308508 SPATA13Q96N96 652 aa13.95□□□□□ -0.18
CSPG4-201ENST00000308508 TRIM2Q9C040 744 aa13.95□□□□□ -0.18
CSPG4-201ENST00000308508 ZNF214Q9UL59 606 aaPredicted RBP13.95□□□□□ -0.18
CSPG4-201ENST00000308508 GOLGA4Q13439 2230 aaKnown RBP13.95□□□□□ -0.18
CSPG4-201ENST00000308508 PRKAG1P54619 331 aa13.95□□□□□ -0.18
CSPG4-201ENST00000308508 ANXA8L1Q5VT79 327 aa13.95□□□□□ -0.18
CSPG4-201ENST00000308508 LYPLAL1Q5VWZ2 237 aa13.95□□□□□ -0.18
CSPG4-201ENST00000308508 CDC42EP5Q6NZY7 148 aa13.95□□□□□ -0.18
CSPG4-201ENST00000308508 BSNDQ8WZ55 320 aa13.95□□□□□ -0.18
CSPG4-201ENST00000308508 AIFM2Q9BRQ8 373 aa13.95□□□□□ -0.18
CSPG4-201ENST00000308508 NCOA3Q9Y6Q9 1424 aa13.94□□□□□ -0.18
CSPG4-201ENST00000308508 AGRPO00253 132 aa13.94□□□□□ -0.18
CSPG4-201ENST00000308508 FGF10O15520 208 aaPredicted RBP13.94□□□□□ -0.18
CSPG4-201ENST00000308508 MAGEC1O60732 1142 aa13.94□□□□□ -0.18
CSPG4-201ENST00000308508 CEBPGP53567 150 aa13.94□□□□□ -0.18
CSPG4-201ENST00000308508 RAB10P61026 200 aa13.94□□□□□ -0.18
CSPG4-201ENST00000308508 LSM12Q3MHD2 195 aaKnown RBP13.94□□□□□ -0.18
CSPG4-201ENST00000308508 ARMC12Q5T9G4 340 aa13.94□□□□□ -0.18
CSPG4-201ENST00000308508 FAM117BQ6P1L5 589 aa13.94□□□□□ -0.18
CSPG4-201ENST00000308508 AMIGO2Q86SJ2 522 aa13.94□□□□□ -0.18
CSPG4-201ENST00000308508 ANKRD13AQ8IZ07 590 aa13.94□□□□□ -0.18
CSPG4-201ENST00000308508 RCN3Q96D15 328 aa13.94□□□□□ -0.18
CSPG4-201ENST00000308508 EHD1Q9H4M9 534 aa13.94□□□□□ -0.18
CSPG4-201ENST00000308508 AXIN2Q9Y2T1 843 aa13.94□□□□□ -0.18
CSPG4-201ENST00000308508 PLIN3O60664 434 aa13.94□□□□□ -0.18
CSPG4-201ENST00000308508 OTCP00480 354 aa13.94□□□□□ -0.18
CSPG4-201ENST00000308508 CATP04040 527 aaKnown RBP13.94□□□□□ -0.18
CSPG4-201ENST00000308508 FUCA2Q9BTY2 467 aa13.94□□□□□ -0.18
CSPG4-201ENST00000308508 ZFP14Q9HCL3 533 aa13.94□□□□□ -0.18
CSPG4-201ENST00000308508 ATP13A1Q9HD20 1204 aa13.94□□□□□ -0.18
CSPG4-201ENST00000308508 EMC3Q9P0I2 261 aa13.94□□□□□ -0.18
CSPG4-201ENST00000308508 WRBO00258 174 aa13.94□□□□□ -0.18
CSPG4-201ENST00000308508 ORC5O43913 435 aa13.94□□□□□ -0.18
CSPG4-201ENST00000308508 HGFP14210 728 aa13.94□□□□□ -0.18
CSPG4-201ENST00000308508 IRF8Q02556 426 aa13.94□□□□□ -0.18
CSPG4-201ENST00000308508 ZMYND11Q15326 602 aa13.94□□□□□ -0.18
CSPG4-201ENST00000308508 MTX3Q5HYI7 312 aa13.94□□□□□ -0.18
CSPG4-201ENST00000308508 PANX1Q96RD7 426 aa13.94□□□□□ -0.18
CSPG4-201ENST00000308508 NOL11Q9H8H0 719 aaKnown RBP13.94□□□□□ -0.18
CSPG4-201ENST00000308508 PRDM4Q9UKN5 801 aa13.94□□□□□ -0.18
CSPG4-201ENST00000308508 TGDSO95455 350 aa13.94□□□□□ -0.18
CSPG4-201ENST00000308508 NUDT17P0C025 328 aa13.94□□□□□ -0.18
CSPG4-201ENST00000308508 COLGALT2Q8IYK4 626 aa13.94□□□□□ -0.18
CSPG4-201ENST00000308508 LENG9Q96B70 501 aa13.94□□□□□ -0.18
CSPG4-201ENST00000308508 EHD4Q9H223 541 aa13.94□□□□□ -0.18
CSPG4-201ENST00000308508 S100A14Q9HCY8 104 aa13.94□□□□□ -0.18
CSPG4-201ENST00000308508 FADS3Q9Y5Q0 445 aa13.94□□□□□ -0.18
CSPG4-201ENST00000308508 PEX11AO75192 247 aa13.94□□□□□ -0.18
CSPG4-201ENST00000308508 UGT2B17O75795 530 aa13.94□□□□□ -0.18
CSPG4-201ENST00000308508 YBX3P16989 372 aaKnown RBP eCLIP13.94□□□□□ -0.18
CSPG4-201ENST00000308508 RXRBP28702 533 aa13.94□□□□□ -0.18
CSPG4-201ENST00000308508 NDST1P52848 882 aa13.94□□□□□ -0.18
CSPG4-201ENST00000308508 OVOS1Q6IE37 1185 aa13.94□□□□□ -0.18
CSPG4-201ENST00000308508 RNF180Q86T96 592 aa13.94□□□□□ -0.18
CSPG4-201ENST00000308508 SIPA1Q96FS4 1042 aa13.94□□□□□ -0.18
CSPG4-201ENST00000308508 CAMSAP1Q5T5Y3 1602 aa13.94□□□□□ -0.18
CSPG4-201ENST00000308508 KCNK1O00180 336 aa13.94□□□□□ -0.18
CSPG4-201ENST00000308508 EIF4BP23588 611 aaKnown RBP13.94□□□□□ -0.18
CSPG4-201ENST00000308508 MIPP30301 263 aa13.94□□□□□ -0.18
CSPG4-201ENST00000308508 GABRB2P47870 512 aa13.94□□□□□ -0.18
CSPG4-201ENST00000308508 BST1Q10588 318 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms