RNA–Protein interactions for RNA: ENST00000273317.4

LIMD1-201, Transcript of LIM domains containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIMD1, Length 11,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-201ENST00000273317 HIPK1Q86Z02 1210 aa8.03□□□□□ -1.12
LIMD1-201ENST00000273317 SPATA31A6Q5VVP1 1343 aa8.03□□□□□ -1.12
LIMD1-201ENST00000273317 CHRNA5P30532 468 aa8.03□□□□□ -1.12
LIMD1-201ENST00000273317 SEC23AQ15436 765 aa8.03□□□□□ -1.12
LIMD1-201ENST00000273317 RUNDC3AQ59EK9 446 aa8.03□□□□□ -1.12
LIMD1-201ENST00000273317 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP8.03□□□□□ -1.12
LIMD1-201ENST00000273317 ABCB10Q9NRK6 738 aa8.03□□□□□ -1.12
LIMD1-201ENST00000273317 SAMHD1Q9Y3Z3 626 aaKnown RBP8.03□□□□□ -1.12
LIMD1-201ENST00000273317 LSM1O15116 133 aaKnown RBP8.03□□□□□ -1.12
LIMD1-201ENST00000273317 DRD4P21917 467 aa8.03□□□□□ -1.12
LIMD1-201ENST00000273317 GPD2P43304 727 aa8.03□□□□□ -1.12
LIMD1-201ENST00000273317 RIPK1Q13546 671 aa8.03□□□□□ -1.12
LIMD1-201ENST00000273317 TMPRSS11AQ6ZMR5 421 aa8.03□□□□□ -1.12
LIMD1-201ENST00000273317 SLC2A14Q8TDB8 520 aa8.03□□□□□ -1.12
LIMD1-201ENST00000273317 CERS2Q96G23 380 aa8.03□□□□□ -1.12
LIMD1-201ENST00000273317 A0A0X1KG70 313 aa8.03□□□□□ -1.12
LIMD1-201ENST00000273317 IQCJ-SCHIP1C9J366 451 aaPredicted RBP8.03□□□□□ -1.12
LIMD1-201ENST00000273317 VTNP04004 478 aa8.03□□□□□ -1.12
LIMD1-201ENST00000273317 RGS1Q08116 209 aa8.03□□□□□ -1.12
LIMD1-201ENST00000273317 FSCN1Q16658 493 aaKnown RBP8.03□□□□□ -1.12
LIMD1-201ENST00000273317 BPIFB6Q8NFQ5 453 aa8.03□□□□□ -1.12
LIMD1-201ENST00000273317 REXO5Q96IC2 774 aaKnown RBP8.03□□□□□ -1.12
LIMD1-201ENST00000273317 DNAJC28Q9NX36 388 aa8.03□□□□□ -1.12
LIMD1-201ENST00000273317 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP8.02□□□□□ -1.12
LIMD1-201ENST00000273317 ANKDD1BA6NHY2 528 aa8.02□□□□□ -1.12
LIMD1-201ENST00000273317 FGF1P05230 155 aa8.02□□□□□ -1.12
LIMD1-201ENST00000273317 CSH1P0DML2 217 aa8.02□□□□□ -1.12
LIMD1-201ENST00000273317 CSH2P0DML3 217 aa8.02□□□□□ -1.12
LIMD1-201ENST00000273317 SSTR1P30872 391 aa8.02□□□□□ -1.12
LIMD1-201ENST00000273317 SNRPD1P62314 119 aaKnown RBP8.02□□□□□ -1.12
LIMD1-201ENST00000273317 POU5F1Q01860 360 aaKnown RBP8.02□□□□□ -1.12
LIMD1-201ENST00000273317 MTAPQ13126 283 aa8.02□□□□□ -1.12
LIMD1-201ENST00000273317 GRM3Q14832 879 aa8.02□□□□□ -1.12
LIMD1-201ENST00000273317 ERICH5Q6P6B1 374 aa8.02□□□□□ -1.12
LIMD1-201ENST00000273317 OAFQ86UD1 273 aa8.02□□□□□ -1.12
LIMD1-201ENST00000273317 MAP4K3Q8IVH8 894 aa8.02□□□□□ -1.12
LIMD1-201ENST00000273317 SYTL5Q8TDW5 730 aaPredicted RBP8.02□□□□□ -1.12
LIMD1-201ENST00000273317 AGAP11Q8TF27 550 aa8.02□□□□□ -1.12
LIMD1-201ENST00000273317 HEXDCQ8WVB3 486 aa8.02□□□□□ -1.12
LIMD1-201ENST00000273317 YME1L1Q96TA2 773 aa8.02□□□□□ -1.12
LIMD1-201ENST00000273317 MTG1Q9BT17 334 aaPredicted RBP8.02□□□□□ -1.12
LIMD1-201ENST00000273317 C1QTNF1Q9BXJ1 281 aa8.02□□□□□ -1.12
LIMD1-201ENST00000273317 MARCH2Q9P0N8 246 aa8.02□□□□□ -1.12
LIMD1-201ENST00000273317 SLIT3O75094 1523 aa8.02□□□□□ -1.12
LIMD1-201ENST00000273317 URADA6NGE7 173 aa8.02□□□□□ -1.12
LIMD1-201ENST00000273317 HDAC3O15379 428 aa8.02□□□□□ -1.12
LIMD1-201ENST00000273317 SNX3O60493 162 aa8.02□□□□□ -1.12
LIMD1-201ENST00000273317 CLK2P49760 499 aaKnown RBP8.02□□□□□ -1.12
LIMD1-201ENST00000273317 SELENOMQ8WWX9 145 aa8.02□□□□□ -1.12
LIMD1-201ENST00000273317 NCKAP1Q9Y2A7 1128 aa8.02□□□□□ -1.12
LIMD1-201ENST00000273317 PRMT5O14744 637 aaPredicted RBP8.02□□□□□ -1.13
LIMD1-201ENST00000273317 ZBTB7AO95365 584 aa8.02□□□□□ -1.13
LIMD1-201ENST00000273317 TUFMP49411 452 aaKnown RBP8.02□□□□□ -1.13
LIMD1-201ENST00000273317 CDH4P55283 916 aa8.02□□□□□ -1.13
LIMD1-201ENST00000273317 SPIBQ01892 262 aa8.02□□□□□ -1.13
LIMD1-201ENST00000273317 C18orf25Q96B23 403 aaPredicted RBP8.02□□□□□ -1.13
LIMD1-201ENST00000273317 A0A0B4J269 797 aa8.02□□□□□ -1.13
LIMD1-201ENST00000273317 AVILO75366 819 aa8.02□□□□□ -1.13
LIMD1-201ENST00000273317 MAP3K6O95382 1288 aa8.02□□□□□ -1.13
LIMD1-201ENST00000273317 PSMB4P28070 264 aa8.02□□□□□ -1.13
LIMD1-201ENST00000273317 PRKG2Q13237 762 aa8.02□□□□□ -1.13
LIMD1-201ENST00000273317 NTRK3Q16288 839 aa8.02□□□□□ -1.13
LIMD1-201ENST00000273317 ZNF540Q8NDQ6 660 aa8.02□□□□□ -1.13
LIMD1-201ENST00000273317 REPS2Q8NFH8 660 aa8.02□□□□□ -1.13
LIMD1-201ENST00000273317 LMAN2LQ9H0V9 348 aa8.02□□□□□ -1.13
LIMD1-201ENST00000273317 MDM4O15151 490 aa8.02□□□□□ -1.13
LIMD1-201ENST00000273317 SERPINA1P01009 418 aa8.02□□□□□ -1.13
LIMD1-201ENST00000273317 TFRCP02786 760 aaKnown RBP8.02□□□□□ -1.13
LIMD1-201ENST00000273317 ACTR3P61158 418 aa8.02□□□□□ -1.13
LIMD1-201ENST00000273317 MAPKAPK3Q16644 382 aa8.02□□□□□ -1.13
LIMD1-201ENST00000273317 MTX3Q5HYI7 312 aa8.02□□□□□ -1.13
LIMD1-201ENST00000273317 TFAP2DQ7Z6R9 452 aa8.02□□□□□ -1.13
LIMD1-201ENST00000273317 STX12Q86Y82 276 aa8.02□□□□□ -1.13
LIMD1-201ENST00000273317 RERGQ96A58 199 aaPredicted RBP8.02□□□□□ -1.13
LIMD1-201ENST00000273317 SAMD4AQ9UPU9 718 aaKnown RBP8.02□□□□□ -1.13
LIMD1-201ENST00000273317 ZNF510Q9Y2H8 683 aa8.02□□□□□ -1.13
LIMD1-201ENST00000273317 DDX3XO00571 662 aaKnown RBP eCLIP8.02□□□□□ -1.13
LIMD1-201ENST00000273317 NFKB1P19838 968 aa8.02□□□□□ -1.13
LIMD1-201ENST00000273317 OMPP47874 163 aa8.02□□□□□ -1.13
LIMD1-201ENST00000273317 AUHQ13825 339 aaKnown RBP8.02□□□□□ -1.13
LIMD1-201ENST00000273317 PACS1Q6VY07 963 aa8.02□□□□□ -1.13
LIMD1-201ENST00000273317 RBM44Q6ZP01 1051 aaKnown RBP8.02□□□□□ -1.13
LIMD1-201ENST00000273317 HJURPQ8NCD3 748 aaPredicted RBP8.02□□□□□ -1.13
LIMD1-201ENST00000273317 SEMA4DQ92854 862 aa8.02□□□□□ -1.13
LIMD1-201ENST00000273317 AHCYL2Q96HN2 611 aaKnown RBP8.02□□□□□ -1.13
LIMD1-201ENST00000273317 DNAJC1Q96KC8 554 aaKnown RBP8.02□□□□□ -1.13
LIMD1-201ENST00000273317 SETD4Q9NVD3 440 aa8.02□□□□□ -1.13
LIMD1-201ENST00000273317 MRTO4Q9UKD2 239 aaKnown RBP8.02□□□□□ -1.13
LIMD1-201ENST00000273317 DHRS7Q9Y394 339 aa8.02□□□□□ -1.13
LIMD1-201ENST00000273317 SPATA31A1Q5TZJ5 1347 aa8.02□□□□□ -1.13
LIMD1-201ENST00000273317 RIC1Q4ADV7 1423 aa8.02□□□□□ -1.13
LIMD1-201ENST00000273317 RBM47A0AV96 593 aaKnown RBP8.02□□□□□ -1.13
LIMD1-201ENST00000273317 LRRC14BA6NHZ5 514 aa8.02□□□□□ -1.13
LIMD1-201ENST00000273317 SASH3O75995 380 aa8.02□□□□□ -1.13
LIMD1-201ENST00000273317 CCNYL3P0C7X3 344 aa8.02□□□□□ -1.13
LIMD1-201ENST00000273317 S100A1P23297 94 aa8.02□□□□□ -1.13
LIMD1-201ENST00000273317 AP1S2P56377 157 aa8.02□□□□□ -1.13
LIMD1-201ENST00000273317 CCNIQ14094 377 aa8.02□□□□□ -1.13
LIMD1-201ENST00000273317 EML3Q32P44 896 aa8.02□□□□□ -1.13
LIMD1-201ENST00000273317 SPATA19Q7Z5L4 167 aa8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms