RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 SIAH2O43255 324 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 HBP1O60381 514 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 ZMPSTE24O75844 475 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 BPNT1O95861 308 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 CHRNB2P17787 502 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 LBPP18428 481 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 CYP11B2P19099 503 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 SCTRP47872 440 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 SLC16A1P53985 500 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 TPTEP56180 551 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 IFI35P80217 286 aaPredicted RBP2.8□□□□□ -1.96
SCN1A-219ENST00000641575 DCP2Q8IU60 420 aaKnown RBP2.8□□□□□ -1.96
SCN1A-219ENST00000641575 FITM2Q8N6M3 262 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 ZFP41Q8N8Y5 198 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 TPCN2Q8NHX9 752 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 HDAC7Q8WUI4 952 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 ARMC5Q96C12 935 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 CXorf40BQ96DE9 158 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 KLF6Q99612 283 aaPredicted RBP2.8□□□□□ -1.96
SCN1A-219ENST00000641575 C11orf84Q9BUA3 381 aaPredicted RBP2.8□□□□□ -1.96
SCN1A-219ENST00000641575 XKR8Q9H6D3 395 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 ALG13Q9NP73 1137 aaKnown RBP2.8□□□□□ -1.96
SCN1A-219ENST00000641575 CMTM6Q9NX76 183 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 CDH22Q9UJ99 828 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 ENTPD4Q9Y227 616 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 HEBP2Q9Y5Z4 205 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 ADGRL2O95490 1459 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 PLXND1Q9Y4D7 1925 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 ANKRD65E5RJM6 399 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 TNFAIP8O95379 198 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 RPLP0P05388 317 aaKnown RBP2.8□□□□□ -1.96
SCN1A-219ENST00000641575 ATP5F1P24539 256 aaPredicted RBP2.8□□□□□ -1.96
SCN1A-219ENST00000641575 LIFRP42702 1097 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 ERVK-9P63128 1117 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 CYP2A13Q16696 494 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 PRAMEF18Q5VWM3 479 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 ZNF574Q6ZN55 896 aaPredicted RBP2.8□□□□□ -1.96
SCN1A-219ENST00000641575 SYT12Q8IV01 421 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 ULK2Q8IYT8 1036 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 SLC22A17Q8WUG5 538 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 MYRFLQ96LU7 910 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 HEXIM2Q96MH2 286 aaKnown RBP2.8□□□□□ -1.96
SCN1A-219ENST00000641575 TMEM168Q9H0V1 697 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 SYT4Q9H2B2 425 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 ERVK-11Q9UQG0 969 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 KDM6BO15054 1643 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 PPLO60437 1756 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 LRRC7Q96NW7 1537 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 ZFYVE9O95405 1425 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 CARMIL3Q8ND23 1372 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 C1orf232A0A0U1RR37 186 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 E9PBE3 544 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 ZBTB14O43829 449 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 ATP9BO43861 1147 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 FAM58BPP0C7Q3 252 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 RFC5P40937 340 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 MAGEA3P43357 314 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 AVPR1BP47901 424 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 POLR2HP52434 150 aaKnown RBP2.8□□□□□ -1.96
SCN1A-219ENST00000641575 NUBP1P53384 320 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 DIO3P55073 304 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 RBL2Q08999 1139 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 CCNIQ14094 377 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 KCNJ8Q15842 424 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 PTGISQ16647 500 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 DOK7Q18PE1 504 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 ZNF699Q32M78 642 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 TRMT5Q32P41 509 aaKnown RBP2.8□□□□□ -1.96
SCN1A-219ENST00000641575 ARSHQ5FYA8 562 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 WASHC2DQ5SRD0 308 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 RAB11FIP2Q7L804 512 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 GPBP1Q86WP2 473 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 GHDCQ8N2G8 530 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 AADATQ8N5Z0 425 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 ZNF614Q8N883 585 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 PIK3C3Q8NEB9 887 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 PLEKHO2Q8TD55 490 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 FNIP1Q8TF40 1166 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 XRN2Q9H0D6 950 aaKnown RBP eCLIP2.8□□□□□ -1.96
SCN1A-219ENST00000641575 CORO2BQ9UQ03 480 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 A0A087WXM4 84 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 C3orf70A6NLC5 250 aaPredicted RBP2.8□□□□□ -1.96
SCN1A-219ENST00000641575 NOTOA8MTQ0 251 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 FAM25EA8MYX2 175 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 HAX1O00165 279 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 KPNA3O00505 521 aaPredicted RBP2.8□□□□□ -1.96
SCN1A-219ENST00000641575 ARPC2O15144 300 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 ANXA9O76027 345 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 ATF6P18850 670 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 SOX11P35716 441 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 DLG4P78352 724 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 SP2Q02086 613 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 SLC34A1Q06495 639 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 BOP1Q14137 746 aaKnown RBP2.8□□□□□ -1.96
SCN1A-219ENST00000641575 ERMARDQ5T6L9 678 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 EMC10Q5UCC4 262 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 XRRA1Q6P2D8 792 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 CLEC17AQ6ZS10 378 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 LANCL3Q6ZV70 420 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 FAM220AQ7Z4H9 259 aa2.8□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms