RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 PIM3Q86V86 326 aa14.74□□□□□ -0.05
CLN3-249ENST00000636685 EFCAB3Q8N7B9 438 aa14.74□□□□□ -0.05
CLN3-249ENST00000636685 DCAF4L2Q8NA75 395 aa14.74□□□□□ -0.05
CLN3-249ENST00000636685 TP53I13Q8NBR0 393 aaPredicted RBP14.74□□□□□ -0.05
CLN3-249ENST00000636685 ART4Q93070 314 aa14.74□□□□□ -0.05
CLN3-249ENST00000636685 NUDT22Q9BRQ3 303 aa14.74□□□□□ -0.05
CLN3-249ENST00000636685 GPN2Q9H9Y4 310 aaPredicted RBP14.74□□□□□ -0.05
CLN3-249ENST00000636685 POPDC2Q9HBU9 364 aa14.74□□□□□ -0.05
CLN3-249ENST00000636685 PRDM8Q9NQV8 689 aa14.74□□□□□ -0.05
CLN3-249ENST00000636685 CUEDC1Q9NWM3 386 aaPredicted RBP14.74□□□□□ -0.05
CLN3-249ENST00000636685 DDIT4Q9NX09 232 aa14.74□□□□□ -0.05
CLN3-249ENST00000636685 SERTAD1Q9UHV2 236 aa14.74□□□□□ -0.05
CLN3-249ENST00000636685 MAPK8IP1Q9UQF2 711 aa14.74□□□□□ -0.05
CLN3-249ENST00000636685 PCDHB4Q9Y5E5 795 aa14.74□□□□□ -0.05
CLN3-249ENST00000636685 TNRC6AQ8NDV7 1962 aaKnown RBP14.74□□□□□ -0.05
CLN3-249ENST00000636685 DOCK4Q8N1I0 1966 aa14.73□□□□□ -0.05
CLN3-249ENST00000636685 B4GAT1O43505 415 aa14.73□□□□□ -0.05
CLN3-249ENST00000636685 ADCY5O95622 1261 aa14.73□□□□□ -0.05
CLN3-249ENST00000636685 CLDN1O95832 211 aa14.73□□□□□ -0.05
CLN3-249ENST00000636685 SLC2A3P11169 496 aa14.73□□□□□ -0.05
CLN3-249ENST00000636685 RPL34P49207 117 aaKnown RBP14.73□□□□□ -0.05
CLN3-249ENST00000636685 OR1D5P58170 312 aa14.73□□□□□ -0.05
CLN3-249ENST00000636685 SRP54P61011 504 aaKnown RBP14.73□□□□□ -0.05
CLN3-249ENST00000636685 SEPT6Q14141 434 aa14.73□□□□□ -0.05
CLN3-249ENST00000636685 IRF4Q15306 451 aa14.73□□□□□ -0.05
CLN3-249ENST00000636685 C14orf28Q4W4Y0 310 aa14.73□□□□□ -0.05
CLN3-249ENST00000636685 CARD16Q5EG05 197 aa14.73□□□□□ -0.05
CLN3-249ENST00000636685 LRRC73Q5JTD7 316 aa14.73□□□□□ -0.05
CLN3-249ENST00000636685 OGFOD3Q6PK18 319 aa14.73□□□□□ -0.05
CLN3-249ENST00000636685 FAM114A1Q8IWE2 563 aa14.73□□□□□ -0.05
CLN3-249ENST00000636685 UNC5BQ8IZJ1 945 aa14.73□□□□□ -0.05
CLN3-249ENST00000636685 OR7D4Q8NG98 312 aa14.73□□□□□ -0.05
CLN3-249ENST00000636685 OR6K2Q8NGY2 324 aa14.73□□□□□ -0.05
CLN3-249ENST00000636685 RAB7BQ96AH8 199 aa14.73□□□□□ -0.05
CLN3-249ENST00000636685 PAGE5Q96GU1 130 aa14.73□□□□□ -0.05
CLN3-249ENST00000636685 CCDC74BQ96LY2 380 aa14.73□□□□□ -0.05
CLN3-249ENST00000636685 TRIM62Q9BVG3 475 aa14.73□□□□□ -0.05
CLN3-249ENST00000636685 SIK2Q9H0K1 926 aa14.73□□□□□ -0.05
CLN3-249ENST00000636685 ZNF106Q9H2Y7 1883 aaKnown RBP14.73□□□□□ -0.05
CLN3-249ENST00000636685 IGHV5-10-1A0A0J9YXX1 117 aa14.72□□□□□ -0.05
CLN3-249ENST00000636685 LOC101059948A0A1B0GTJ6 334 aa14.72□□□□□ -0.05
CLN3-249ENST00000636685 TTLL8A6PVC2 850 aa14.72□□□□□ -0.05
CLN3-249ENST00000636685 B4DGG1 531 aa14.72□□□□□ -0.05
CLN3-249ENST00000636685 TOR1BO14657 336 aa14.72□□□□□ -0.05
CLN3-249ENST00000636685 HGSO14964 777 aaPredicted RBP14.72□□□□□ -0.05
CLN3-249ENST00000636685 STX10O60499 249 aa14.72□□□□□ -0.05
CLN3-249ENST00000636685 CPNE6O95741 557 aa14.72□□□□□ -0.05
CLN3-249ENST00000636685 RPL13P26373 211 aaKnown RBP14.72□□□□□ -0.05
CLN3-249ENST00000636685 YWHAZP63104 245 aaKnown RBP14.72□□□□□ -0.05
CLN3-249ENST00000636685 HLTFQ14527 1009 aaKnown RBP eCLIP14.72□□□□□ -0.05
CLN3-249ENST00000636685 STILQ15468 1287 aa14.72□□□□□ -0.05
CLN3-249ENST00000636685 KLHL40Q2TBA0 621 aa14.72□□□□□ -0.05
CLN3-249ENST00000636685 C5orf22Q49AR2 442 aa14.72□□□□□ -0.05
CLN3-249ENST00000636685 C16orf46Q6P387 395 aa14.72□□□□□ -0.05
CLN3-249ENST00000636685 ASB18Q6ZVZ8 466 aa14.72□□□□□ -0.05
CLN3-249ENST00000636685 CEP57L1Q8IYX8 460 aa14.72□□□□□ -0.05
CLN3-249ENST00000636685 PCDH20Q8N6Y1 951 aaKnown RBP14.72□□□□□ -0.05
CLN3-249ENST00000636685 FAM46DQ8NEK8 389 aa14.72□□□□□ -0.05
CLN3-249ENST00000636685 CPT1CQ8TCG5 803 aa14.72□□□□□ -0.05
CLN3-249ENST00000636685 CASS4Q9NQ75 786 aa14.72□□□□□ -0.05
CLN3-249ENST00000636685 HECAQ9UBI9 543 aaPredicted RBP14.72□□□□□ -0.05
CLN3-249ENST00000636685 MTMR6Q9Y217 621 aa14.72□□□□□ -0.05
CLN3-249ENST00000636685 FCF1Q9Y324 198 aaKnown RBP14.72□□□□□ -0.05
CLN3-249ENST00000636685 COQ4Q9Y3A0 265 aa14.72□□□□□ -0.05
CLN3-249ENST00000636685 SNX10Q9Y5X0 201 aa14.72□□□□□ -0.05
CLN3-249ENST00000636685 ACTL7AQ9Y615 435 aa14.72□□□□□ -0.05
CLN3-249ENST00000636685 PRRC2CQ9Y520 2896 aaKnown RBP14.72□□□□□ -0.05
CLN3-249ENST00000636685 AREL1O15033 823 aa14.71□□□□□ -0.05
CLN3-249ENST00000636685 PAGE1O75459 146 aa14.71□□□□□ -0.05
CLN3-249ENST00000636685 TM7SF2O76062 418 aa14.71□□□□□ -0.05
CLN3-249ENST00000636685 DDAH2O95865 285 aa14.71□□□□□ -0.05
CLN3-249ENST00000636685 ITIH2P19823 946 aa14.71□□□□□ -0.05
CLN3-249ENST00000636685 GPD2P43304 727 aa14.71□□□□□ -0.05
CLN3-249ENST00000636685 SERPINH1P50454 418 aaKnown RBP14.71□□□□□ -0.05
CLN3-249ENST00000636685 PEX5P50542 639 aa14.71□□□□□ -0.05
CLN3-249ENST00000636685 CDK17Q00537 523 aa14.71□□□□□ -0.05
CLN3-249ENST00000636685 TCERG1LQ5VWI1 586 aa14.71□□□□□ -0.05
CLN3-249ENST00000636685 C1QL3Q5VWW1 255 aa14.71□□□□□ -0.05
CLN3-249ENST00000636685 DENND1BQ6P3S1 775 aa14.71□□□□□ -0.05
CLN3-249ENST00000636685 TFAP2DQ7Z6R9 452 aa14.71□□□□□ -0.05
CLN3-249ENST00000636685 TAF8Q7Z7C8 310 aa14.71□□□□□ -0.05
CLN3-249ENST00000636685 KIAA1143Q96AT1 154 aaPredicted RBP14.71□□□□□ -0.05
CLN3-249ENST00000636685 PDXPQ96GD0 296 aa14.71□□□□□ -0.05
CLN3-249ENST00000636685 HAPLN3Q96S86 360 aa14.71□□□□□ -0.05
CLN3-249ENST00000636685 RBM15Q96T37 977 aaKnown RBP eCLIP14.71□□□□□ -0.05
CLN3-249ENST00000636685 SPON2Q9BUD6 331 aa14.71□□□□□ -0.05
CLN3-249ENST00000636685 DDA1Q9BW61 102 aa14.71□□□□□ -0.05
CLN3-249ENST00000636685 TM6SF2Q9BZW4 377 aa14.71□□□□□ -0.05
CLN3-249ENST00000636685 CEP44Q9C0F1 390 aa14.71□□□□□ -0.05
CLN3-249ENST00000636685 SLC39A1Q9NY26 324 aa14.71□□□□□ -0.05
CLN3-249ENST00000636685 FAM13BQ9NYF5 915 aa14.71□□□□□ -0.05
CLN3-249ENST00000636685 KLQ9UEF7 1012 aa14.71□□□□□ -0.05
CLN3-249ENST00000636685 PILRAQ9UKJ1 303 aa14.71□□□□□ -0.05
CLN3-249ENST00000636685 TMEM110-MUSTN1A8MSY1 372 aa14.7□□□□□ -0.06
CLN3-249ENST00000636685 E5RJQ4 531 aa14.7□□□□□ -0.06
CLN3-249ENST00000636685 ACTN4O43707 911 aaKnown RBP14.7□□□□□ -0.06
CLN3-249ENST00000636685 NUDT21O43809 227 aaKnown RBP14.7□□□□□ -0.06
CLN3-249ENST00000636685 ZMPSTE24O75844 475 aa14.7□□□□□ -0.06
CLN3-249ENST00000636685 TNFP01375 233 aa14.7□□□□□ -0.06
CLN3-249ENST00000636685 TBXAS1P24557 533 aaPredicted RBP14.7□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms