RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 TLK1Q9UKI8 766 aa14.63□□□□□ -0.07
SHROOM1-208ENST00000617339 CFLARO15519 480 aa14.62□□□□□ -0.07
SHROOM1-208ENST00000617339 TFPTP0C1Z6 253 aa14.62□□□□□ -0.07
SHROOM1-208ENST00000617339 PGAM1P18669 254 aa14.62□□□□□ -0.07
SHROOM1-208ENST00000617339 COPAP53621 1224 aa14.62□□□□□ -0.07
SHROOM1-208ENST00000617339 SH3BGRP55822 239 aaPredicted RBP14.62□□□□□ -0.07
SHROOM1-208ENST00000617339 TAF10Q12962 218 aa14.62□□□□□ -0.07
SHROOM1-208ENST00000617339 DCTN2Q13561 401 aaKnown RBP14.62□□□□□ -0.07
SHROOM1-208ENST00000617339 SLC44A4Q53GD3 710 aa14.62□□□□□ -0.07
SHROOM1-208ENST00000617339 ALFQ53S48 1182 aa14.62□□□□□ -0.07
SHROOM1-208ENST00000617339 CLLU1OSQ5K130 101 aa14.62□□□□□ -0.07
SHROOM1-208ENST00000617339 OTOP2Q7RTS6 562 aa14.62□□□□□ -0.07
SHROOM1-208ENST00000617339 CHSY1Q86X52 802 aa14.62□□□□□ -0.07
SHROOM1-208ENST00000617339 SEPT8Q92599 483 aa14.62□□□□□ -0.07
SHROOM1-208ENST00000617339 CCDC28BQ9BUN5 200 aa14.62□□□□□ -0.07
SHROOM1-208ENST00000617339 YIPF2Q9BWQ6 316 aa14.62□□□□□ -0.07
SHROOM1-208ENST00000617339 DOLKQ9UPQ8 538 aa14.62□□□□□ -0.07
SHROOM1-208ENST00000617339 HHLA1C9JL84 531 aa14.62□□□□□ -0.07
SHROOM1-208ENST00000617339 SPAG6O75602 509 aa14.62□□□□□ -0.07
SHROOM1-208ENST00000617339 HSPA4LO95757 839 aa14.62□□□□□ -0.07
SHROOM1-208ENST00000617339 CCDC166P0CW27 439 aa14.62□□□□□ -0.07
SHROOM1-208ENST00000617339 ZNF554Q86TJ5 538 aa14.62□□□□□ -0.07
SHROOM1-208ENST00000617339 KLHDC9Q8NEP7 349 aa14.62□□□□□ -0.07
SHROOM1-208ENST00000617339 SLC2A13Q96QE2 648 aa14.62□□□□□ -0.07
SHROOM1-208ENST00000617339 ACBD6Q9BR61 282 aa14.62□□□□□ -0.07
SHROOM1-208ENST00000617339 DHRS4Q9BTZ2 278 aa14.62□□□□□ -0.07
SHROOM1-208ENST00000617339 UNC93B1Q9H1C4 597 aa14.62□□□□□ -0.07
SHROOM1-208ENST00000617339 LRRC40Q9H9A6 602 aa14.62□□□□□ -0.07
SHROOM1-208ENST00000617339 SSU72Q9NP77 194 aaKnown RBP14.62□□□□□ -0.07
SHROOM1-208ENST00000617339 IPO11Q9UI26 975 aaKnown RBP14.62□□□□□ -0.07
SHROOM1-208ENST00000617339 CRYL1Q9Y2S2 319 aa14.62□□□□□ -0.07
SHROOM1-208ENST00000617339 KCTD3Q9Y597 815 aa14.62□□□□□ -0.07
SHROOM1-208ENST00000617339 A0A0G2JMZ2 1700 aa14.62□□□□□ -0.07
SHROOM1-208ENST00000617339 ARHGEF37A1IGU5 675 aa14.62□□□□□ -0.07
SHROOM1-208ENST00000617339 NEMP2A6NFY4 417 aa14.62□□□□□ -0.07
SHROOM1-208ENST00000617339 VEGFBP49765 207 aa14.62□□□□□ -0.07
SHROOM1-208ENST00000617339 PSMD7P51665 324 aa14.62□□□□□ -0.07
SHROOM1-208ENST00000617339 BFSP2Q13515 415 aa14.62□□□□□ -0.07
SHROOM1-208ENST00000617339 HNRNPDQ14103 355 aaKnown RBP14.62□□□□□ -0.07
SHROOM1-208ENST00000617339 VARS2Q5ST30 1063 aaKnown RBP14.62□□□□□ -0.07
SHROOM1-208ENST00000617339 TAS1R1Q7RTX1 841 aa14.62□□□□□ -0.07
SHROOM1-208ENST00000617339 SCD5Q86SK9 330 aa14.62□□□□□ -0.07
SHROOM1-208ENST00000617339 CCDC117Q8IWD4 279 aaPredicted RBP14.62□□□□□ -0.07
SHROOM1-208ENST00000617339 ZNF419Q96HQ0 510 aaPredicted RBP14.62□□□□□ -0.07
SHROOM1-208ENST00000617339 CCSER2Q9H7U1 834 aa14.62□□□□□ -0.07
SHROOM1-208ENST00000617339 POMPQ9Y244 141 aa14.62□□□□□ -0.07
SHROOM1-208ENST00000617339 HBS1LQ9Y450 684 aaKnown RBP14.62□□□□□ -0.07
SHROOM1-208ENST00000617339 FAM159BA6NKW6 160 aa14.61□□□□□ -0.07
SHROOM1-208ENST00000617339 ACRP10323 421 aa14.61□□□□□ -0.07
SHROOM1-208ENST00000617339 HAPLN1P10915 354 aaPredicted RBP14.61□□□□□ -0.07
SHROOM1-208ENST00000617339 MX2P20592 715 aa14.61□□□□□ -0.07
SHROOM1-208ENST00000617339 CD86P42081 329 aa14.61□□□□□ -0.07
SHROOM1-208ENST00000617339 SERPINB8P50452 374 aa14.61□□□□□ -0.07
SHROOM1-208ENST00000617339 KCNQ1P51787 676 aa14.61□□□□□ -0.07
SHROOM1-208ENST00000617339 MRPS22P82650 360 aaKnown RBP14.61□□□□□ -0.07
SHROOM1-208ENST00000617339 TBL3Q12788 808 aaKnown RBP14.61□□□□□ -0.07
SHROOM1-208ENST00000617339 GRM3Q14832 879 aa14.61□□□□□ -0.07
SHROOM1-208ENST00000617339 GEN1Q17RS7 908 aa14.61□□□□□ -0.07
SHROOM1-208ENST00000617339 BLOC1S5Q8TDH9 187 aa14.61□□□□□ -0.07
SHROOM1-208ENST00000617339 KCTD4Q8WVF5 259 aa14.61□□□□□ -0.07
SHROOM1-208ENST00000617339 KCTD13Q8WZ19 329 aa14.61□□□□□ -0.07
SHROOM1-208ENST00000617339 HIPK3Q9H422 1215 aa14.61□□□□□ -0.07
SHROOM1-208ENST00000617339 WDR55Q9H6Y2 383 aaPredicted RBP14.61□□□□□ -0.07
SHROOM1-208ENST00000617339 CDH22Q9UJ99 828 aa14.61□□□□□ -0.07
SHROOM1-208ENST00000617339 RUVBL2Q9Y230 463 aaKnown RBP14.61□□□□□ -0.07
SHROOM1-208ENST00000617339 MTF2Q9Y483 593 aaPredicted RBP14.61□□□□□ -0.07
SHROOM1-208ENST00000617339 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP14.61□□□□□ -0.07
SHROOM1-208ENST00000617339 STAMBPO95630 424 aa14.61□□□□□ -0.07
SHROOM1-208ENST00000617339 DHRS4L1P0CG22 281 aa14.61□□□□□ -0.07
SHROOM1-208ENST00000617339 TPSB2P20231 275 aa14.61□□□□□ -0.07
SHROOM1-208ENST00000617339 PRKCHP24723 683 aa14.61□□□□□ -0.07
SHROOM1-208ENST00000617339 SLC1A6P48664 564 aa14.61□□□□□ -0.07
SHROOM1-208ENST00000617339 PLOD1Q02809 727 aaPredicted RBP14.61□□□□□ -0.07
SHROOM1-208ENST00000617339 SLC10A7Q0GE19 358 aa14.61□□□□□ -0.07
SHROOM1-208ENST00000617339 PCBP1Q15365 356 aaKnown RBP eCLIP14.61□□□□□ -0.07
SHROOM1-208ENST00000617339 TPSAB1Q15661 275 aa14.61□□□□□ -0.07
SHROOM1-208ENST00000617339 KLHL35Q6PF15 583 aa14.61□□□□□ -0.07
SHROOM1-208ENST00000617339 C16orf59Q7L2K0 433 aa14.61□□□□□ -0.07
SHROOM1-208ENST00000617339 AUTS2Q8WXX7 1259 aa14.61□□□□□ -0.07
SHROOM1-208ENST00000617339 PSMG2Q969U7 264 aa14.61□□□□□ -0.07
SHROOM1-208ENST00000617339 COPS7BQ9H9Q2 264 aaPredicted RBP14.61□□□□□ -0.07
SHROOM1-208ENST00000617339 APOBEC2Q9Y235 224 aaKnown RBP14.61□□□□□ -0.07
SHROOM1-208ENST00000617339 F9P00740 461 aa14.61□□□□□ -0.07
SHROOM1-208ENST00000617339 C2P06681 752 aa14.61□□□□□ -0.07
SHROOM1-208ENST00000617339 RPL9P32969 192 aaKnown RBP14.61□□□□□ -0.07
SHROOM1-208ENST00000617339 SOX11P35716 441 aa14.61□□□□□ -0.07
SHROOM1-208ENST00000617339 CPOXP36551 454 aa14.61□□□□□ -0.07
SHROOM1-208ENST00000617339 PTPRRQ15256 657 aa14.61□□□□□ -0.07
SHROOM1-208ENST00000617339 MAP3K21Q5TCX8 1036 aa14.61□□□□□ -0.07
SHROOM1-208ENST00000617339 ZNF470Q6ECI4 717 aa14.61□□□□□ -0.07
SHROOM1-208ENST00000617339 GAB3Q8WWW8 586 aa14.61□□□□□ -0.07
SHROOM1-208ENST00000617339 SP110Q9HB58 689 aa14.61□□□□□ -0.07
SHROOM1-208ENST00000617339 GKN1Q9NS71 199 aa14.61□□□□□ -0.07
SHROOM1-208ENST00000617339 AP4B1Q9Y6B7 739 aa14.61□□□□□ -0.07
SHROOM1-208ENST00000617339 ARSAP15289 507 aa14.6□□□□□ -0.07
SHROOM1-208ENST00000617339 STT3AP46977 705 aa14.6□□□□□ -0.07
SHROOM1-208ENST00000617339 DSC2Q02487 901 aa14.6□□□□□ -0.07
SHROOM1-208ENST00000617339 DCP1BQ8IZD4 617 aaKnown RBP14.6□□□□□ -0.07
SHROOM1-208ENST00000617339 ST13P5Q8NFI4 369 aaPredicted RBP14.6□□□□□ -0.07
SHROOM1-208ENST00000617339 ELMO2Q96JJ3 720 aa14.6□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms