RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 CLCA2Q9UQC9 943 aa4.99□□□□□ -1.61
VPS13D-213ENST00000613099 ITGB4P16144 1822 aa4.99□□□□□ -1.61
VPS13D-213ENST00000613099 M0QZ92 97 aa4.99□□□□□ -1.61
VPS13D-213ENST00000613099 KCNA5P22460 613 aa4.99□□□□□ -1.61
VPS13D-213ENST00000613099 LSM3P62310 102 aaKnown RBP4.99□□□□□ -1.61
VPS13D-213ENST00000613099 CD83Q01151 205 aa4.99□□□□□ -1.61
VPS13D-213ENST00000613099 PRKG2Q13237 762 aa4.99□□□□□ -1.61
VPS13D-213ENST00000613099 SLC9A9Q8IVB4 645 aa4.99□□□□□ -1.61
VPS13D-213ENST00000613099 CLP1Q92989 425 aaKnown RBP4.99□□□□□ -1.61
VPS13D-213ENST00000613099 CNDP2Q96KP4 475 aaKnown RBP4.99□□□□□ -1.61
VPS13D-213ENST00000613099 HYLS1Q96M11 299 aa4.99□□□□□ -1.61
VPS13D-213ENST00000613099 PRRG3Q9BZD7 231 aa4.99□□□□□ -1.61
VPS13D-213ENST00000613099 PCDH9Q9HC56 1237 aa4.99□□□□□ -1.61
VPS13D-213ENST00000613099 EIF3KQ9UBQ5 218 aaKnown RBP4.99□□□□□ -1.61
VPS13D-213ENST00000613099 SLC7A8Q9UHI5 535 aa4.99□□□□□ -1.61
VPS13D-213ENST00000613099 ATRNO75882 1429 aa4.99□□□□□ -1.61
VPS13D-213ENST00000613099 PAPSS1O43252 624 aaPredicted RBP4.99□□□□□ -1.61
VPS13D-213ENST00000613099 GMFGO60234 142 aa4.99□□□□□ -1.61
VPS13D-213ENST00000613099 AVILO75366 819 aa4.99□□□□□ -1.61
VPS13D-213ENST00000613099 SERPINF2P08697 491 aa4.99□□□□□ -1.61
VPS13D-213ENST00000613099 RALAP11233 206 aa4.99□□□□□ -1.61
VPS13D-213ENST00000613099 SRCP12931 536 aa4.99□□□□□ -1.61
VPS13D-213ENST00000613099 MMP8P22894 467 aa4.99□□□□□ -1.61
VPS13D-213ENST00000613099 HLA-FP30511 346 aa4.99□□□□□ -1.61
VPS13D-213ENST00000613099 CSTF2P33240 577 aaKnown RBP eCLIP4.99□□□□□ -1.61
VPS13D-213ENST00000613099 SEC23AQ15436 765 aa4.99□□□□□ -1.61
VPS13D-213ENST00000613099 AGAP7PQ5VUJ5 663 aa4.99□□□□□ -1.61
VPS13D-213ENST00000613099 CATSPER4Q7RTX7 472 aa4.99□□□□□ -1.61
VPS13D-213ENST00000613099 PGAM4Q8N0Y7 254 aa4.99□□□□□ -1.61
VPS13D-213ENST00000613099 C12orf45Q8N5I9 185 aaPredicted RBP4.99□□□□□ -1.61
VPS13D-213ENST00000613099 ATP13A3Q9H7F0 1226 aa4.99□□□□□ -1.61
VPS13D-213ENST00000613099 NYAP2Q9P242 653 aa4.99□□□□□ -1.61
VPS13D-213ENST00000613099 UBR2Q8IWV8 1755 aa4.99□□□□□ -1.61
VPS13D-213ENST00000613099 NPHP4O75161 1426 aaPredicted RBP4.99□□□□□ -1.61
VPS13D-213ENST00000613099 RBAK-RBAKDNI3L0D1 243 aa4.99□□□□□ -1.61
VPS13D-213ENST00000613099 CKBP12277 381 aa4.99□□□□□ -1.61
VPS13D-213ENST00000613099 HTR7P34969 479 aa4.99□□□□□ -1.61
VPS13D-213ENST00000613099 MPP1Q00013 466 aa4.99□□□□□ -1.61
VPS13D-213ENST00000613099 MVKQ03426 396 aa4.99□□□□□ -1.61
VPS13D-213ENST00000613099 POU5F1BQ06416 359 aa4.99□□□□□ -1.61
VPS13D-213ENST00000613099 ALG1LQ6GMV1 187 aa4.99□□□□□ -1.61
VPS13D-213ENST00000613099 NT5DC3Q86UY8 548 aa4.99□□□□□ -1.61
VPS13D-213ENST00000613099 NATD1Q8N6N6 113 aa4.99□□□□□ -1.61
VPS13D-213ENST00000613099 FAM71DQ8N9W8 422 aa4.99□□□□□ -1.61
VPS13D-213ENST00000613099 C3orf58Q8NDZ4 430 aa4.99□□□□□ -1.61
VPS13D-213ENST00000613099 BORCS6Q96GS4 357 aa4.99□□□□□ -1.61
VPS13D-213ENST00000613099 FERD3LQ96RJ6 166 aa4.99□□□□□ -1.61
VPS13D-213ENST00000613099 PTTG3PQ9NZH4 202 aa4.99□□□□□ -1.61
VPS13D-213ENST00000613099 CYP2D7A0A087X1C5 515 aa4.99□□□□□ -1.61
VPS13D-213ENST00000613099 M0R233 179 aa4.99□□□□□ -1.61
VPS13D-213ENST00000613099 KPNA6O60684 536 aa4.99□□□□□ -1.61
VPS13D-213ENST00000613099 OR2B3O76000 313 aa4.99□□□□□ -1.61
VPS13D-213ENST00000613099 GJA1P17302 382 aa4.99□□□□□ -1.61
VPS13D-213ENST00000613099 TUBP50607 506 aa4.99□□□□□ -1.61
VPS13D-213ENST00000613099 NKX2-5P52952 324 aaPredicted RBP4.99□□□□□ -1.61
VPS13D-213ENST00000613099 EIF5AP63241 154 aaKnown RBP4.99□□□□□ -1.61
VPS13D-213ENST00000613099 TOMM20Q15388 145 aa4.99□□□□□ -1.61
VPS13D-213ENST00000613099 IMPG1Q17R60 797 aa4.99□□□□□ -1.61
VPS13D-213ENST00000613099 VMACQ2NL98 169 aa4.99□□□□□ -1.61
VPS13D-213ENST00000613099 GPR180Q86V85 440 aa4.99□□□□□ -1.61
VPS13D-213ENST00000613099 UPF1Q92900 1129 aaKnown RBP eCLIP4.99□□□□□ -1.61
VPS13D-213ENST00000613099 SUCLG2Q96I99 432 aa4.99□□□□□ -1.61
VPS13D-213ENST00000613099 TLE6Q9H808 572 aa4.99□□□□□ -1.61
VPS13D-213ENST00000613099 RSAD1Q9HA92 442 aa4.99□□□□□ -1.61
VPS13D-213ENST00000613099 PLEKHA6Q9Y2H5 1048 aa4.99□□□□□ -1.61
VPS13D-213ENST00000613099 IRGMA1A4Y4 181 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 A1BGP04217 495 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 RPS2P15880 293 aaKnown RBP4.98□□□□□ -1.61
VPS13D-213ENST00000613099 UQCRC1P31930 480 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 TDGQ13569 410 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 RFPL4BQ6ZWI9 263 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 RHOUQ7L0Q8 258 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 SGMS1Q86VZ5 419 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 PROSER1Q86XN7 944 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 SVOPLQ8N434 492 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 TRNT1Q96Q11 434 aaKnown RBP4.98□□□□□ -1.61
VPS13D-213ENST00000613099 TTYH2Q9BSA4 534 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 QRSL1Q9H0R6 528 aaKnown RBP4.98□□□□□ -1.61
VPS13D-213ENST00000613099 ZDHHC7Q9NXF8 308 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 NPHP3-ACAD11A0A0J9YXS1 232 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 H7C1Q1 480 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 TBXAS1P24557 533 aaPredicted RBP4.98□□□□□ -1.61
VPS13D-213ENST00000613099 CASP1P29466 404 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 TMEM62Q0P6H9 643 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 PDK1Q15118 436 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 METTL4Q8N3J2 472 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 ESX1Q8N693 406 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 SMG7Q92540 1137 aaKnown RBP4.98□□□□□ -1.61
VPS13D-213ENST00000613099 GLT1D1Q96MS3 346 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 PPP1R10Q96QC0 940 aaKnown RBP4.98□□□□□ -1.61
VPS13D-213ENST00000613099 FOLH1BQ9HBA9 442 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 NXF1Q9UBU9 619 aaKnown RBP4.98□□□□□ -1.61
VPS13D-213ENST00000613099 SFMBT1Q9UHJ3 866 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 MRASO14807 208 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 AQP9O43315 295 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 PDGFAP04085 211 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 PROS1P07225 676 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 DENND5BQ6ZUT9 1274 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 HERC6Q8IVU3 1022 aa4.98□□□□□ -1.61
VPS13D-213ENST00000613099 FNDC5Q8NAU1 212 aa4.98□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms