RNA–Protein interactions for RNA: ENST00000589823.6

VMP1-210, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 580 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-210ENST00000589823 FAM153AQ9UHL3 310 aa13.77□□□□□ -0.21
VMP1-210ENST00000589823 SARDHQ9UL12 918 aa13.77□□□□□ -0.21
VMP1-210ENST00000589823 SCML1Q9UN30 329 aa13.77□□□□□ -0.21
VMP1-210ENST00000589823 NCKAP1Q9Y2A7 1128 aa13.77□□□□□ -0.21
VMP1-210ENST00000589823 AAR2Q9Y312 384 aaKnown RBP13.77□□□□□ -0.21
VMP1-210ENST00000589823 A0A1W2PQ67 120 aa13.76□□□□□ -0.21
VMP1-210ENST00000589823 CTAGE15A4D2H0 777 aa13.76□□□□□ -0.21
VMP1-210ENST00000589823 K7ESF4 209 aa13.76□□□□□ -0.21
VMP1-210ENST00000589823 KRT14P02533 472 aa13.76□□□□□ -0.21
VMP1-210ENST00000589823 ZSCAN5DPP0CG00 497 aa13.76□□□□□ -0.21
VMP1-210ENST00000589823 CTAGE8P0CG41 777 aa13.76□□□□□ -0.21
VMP1-210ENST00000589823 ETS1P14921 441 aa13.76□□□□□ -0.21
VMP1-210ENST00000589823 RPL22P35268 128 aaKnown RBP13.76□□□□□ -0.21
VMP1-210ENST00000589823 FDFT1P37268 417 aa13.76□□□□□ -0.21
VMP1-210ENST00000589823 GEMP55040 296 aa13.76□□□□□ -0.21
VMP1-210ENST00000589823 SKOR1P84550 965 aa13.76□□□□□ -0.21
VMP1-210ENST00000589823 DR1Q01658 176 aa13.76□□□□□ -0.21
VMP1-210ENST00000589823 CSTF1Q05048 431 aaKnown RBP13.76□□□□□ -0.21
VMP1-210ENST00000589823 CCDC15Q0P6D6 951 aa13.76□□□□□ -0.21
VMP1-210ENST00000589823 DHX34Q14147 1143 aaKnown RBP13.76□□□□□ -0.21
VMP1-210ENST00000589823 SLC14A2Q15849 920 aa13.76□□□□□ -0.21
VMP1-210ENST00000589823 POM121L1PQ3SYA9 428 aa13.76□□□□□ -0.21
VMP1-210ENST00000589823 ARMC12Q5T9G4 340 aa13.76□□□□□ -0.21
VMP1-210ENST00000589823 SYDE1Q6ZW31 735 aaPredicted RBP13.76□□□□□ -0.21
VMP1-210ENST00000589823 CTAGE6Q86UF2 777 aa13.76□□□□□ -0.21
VMP1-210ENST00000589823 RASSF3Q86WH2 238 aa13.76□□□□□ -0.21
VMP1-210ENST00000589823 CTAGE4Q8IX94 777 aa13.76□□□□□ -0.21
VMP1-210ENST00000589823 MDGA1Q8NFP4 955 aa13.76□□□□□ -0.21
VMP1-210ENST00000589823 SPATA22Q8NHS9 363 aa13.76□□□□□ -0.21
VMP1-210ENST00000589823 CCHCR1Q8TD31 782 aa13.76□□□□□ -0.21
VMP1-210ENST00000589823 PDCD6IPQ8WUM4 868 aaKnown RBP13.76□□□□□ -0.21
VMP1-210ENST00000589823 LRRC45Q96CN5 670 aa13.76□□□□□ -0.21
VMP1-210ENST00000589823 OMDQ99983 421 aa13.76□□□□□ -0.21
VMP1-210ENST00000589823 PABPC3Q9H361 631 aaKnown RBP13.76□□□□□ -0.21
VMP1-210ENST00000589823 VPS45Q9NRW7 570 aa13.76□□□□□ -0.21
VMP1-210ENST00000589823 UBP1Q9NZI7 540 aa13.76□□□□□ -0.21
VMP1-210ENST00000589823 PCDHGC4Q9Y5F7 938 aa13.76□□□□□ -0.21
VMP1-210ENST00000589823 RAI2Q9Y5P3 530 aa13.76□□□□□ -0.21
VMP1-210ENST00000589823 PSMD3O43242 534 aa13.75□□□□□ -0.21
VMP1-210ENST00000589823 PMPCBO75439 489 aa13.75□□□□□ -0.21
VMP1-210ENST00000589823 RNASEH2AO75792 299 aaKnown RBP13.75□□□□□ -0.21
VMP1-210ENST00000589823 METTL18O95568 372 aa13.75□□□□□ -0.21
VMP1-210ENST00000589823 MT-CYBP00156 380 aaPredicted RBP13.75□□□□□ -0.21
VMP1-210ENST00000589823 MMP2P08253 660 aa13.75□□□□□ -0.21
VMP1-210ENST00000589823 XPAP23025 273 aaPredicted RBP13.75□□□□□ -0.21
VMP1-210ENST00000589823 ITGB7P26010 798 aa13.75□□□□□ -0.21
VMP1-210ENST00000589823 HOXA6P31267 233 aa13.75□□□□□ -0.21
VMP1-210ENST00000589823 PXNP49023 591 aaPredicted RBP13.75□□□□□ -0.21
VMP1-210ENST00000589823 NUBP1P53384 320 aa13.75□□□□□ -0.21
VMP1-210ENST00000589823 POLR2LP62875 67 aaKnown RBP13.75□□□□□ -0.21
VMP1-210ENST00000589823 TRAF2Q12933 501 aa13.75□□□□□ -0.21
VMP1-210ENST00000589823 MPP3Q13368 585 aa13.75□□□□□ -0.21
VMP1-210ENST00000589823 TRIP13Q15645 432 aaPredicted RBP13.75□□□□□ -0.21
VMP1-210ENST00000589823 PCSK7Q16549 785 aa13.75□□□□□ -0.21
VMP1-210ENST00000589823 FBXL19Q6PCT2 694 aa13.75□□□□□ -0.21
VMP1-210ENST00000589823 BRAT1Q6PJG6 821 aa13.75□□□□□ -0.21
VMP1-210ENST00000589823 MAATS1Q7Z4T9 603 aa13.75□□□□□ -0.21
VMP1-210ENST00000589823 PRUNE1Q86TP1 453 aa13.75□□□□□ -0.21
VMP1-210ENST00000589823 PRPF39Q86UA1 669 aaKnown RBP13.75□□□□□ -0.21
VMP1-210ENST00000589823 KBTBD6Q86V97 674 aa13.75□□□□□ -0.21
VMP1-210ENST00000589823 HDDC3Q8N4P3 179 aa13.75□□□□□ -0.21
VMP1-210ENST00000589823 TAB3Q8N5C8 712 aaPredicted RBP13.75□□□□□ -0.21
VMP1-210ENST00000589823 GLIS1Q8NBF1 620 aa13.75□□□□□ -0.21
VMP1-210ENST00000589823 HCAR2Q8TDS4 363 aa13.75□□□□□ -0.21
VMP1-210ENST00000589823 SLCO2A1Q92959 643 aa13.75□□□□□ -0.21
VMP1-210ENST00000589823 ARRDC3Q96B67 414 aa13.75□□□□□ -0.21
VMP1-210ENST00000589823 IFT43Q96FT9 208 aa13.75□□□□□ -0.21
VMP1-210ENST00000589823 TPSD1Q9BZJ3 242 aa13.75□□□□□ -0.21
VMP1-210ENST00000589823 RAB6BQ9NRW1 208 aa13.75□□□□□ -0.21
VMP1-210ENST00000589823 FBXL12Q9NXK8 326 aa13.75□□□□□ -0.21
VMP1-210ENST00000589823 DKK3Q9UBP4 350 aa13.75□□□□□ -0.21
VMP1-210ENST00000589823 EBF1Q9UH73 591 aa13.75□□□□□ -0.21
VMP1-210ENST00000589823 FBXO4Q9UKT5 387 aa13.75□□□□□ -0.21
VMP1-210ENST00000589823 CCDC163A0A0D9SF12 145 aa13.74□□□□□ -0.21
VMP1-210ENST00000589823 A0A1W2PP55 124 aa13.74□□□□□ -0.21
VMP1-210ENST00000589823 C16orf96A6NNT2 1141 aa13.74□□□□□ -0.21
VMP1-210ENST00000589823 E7EVH7 732 aa13.74□□□□□ -0.21
VMP1-210ENST00000589823 DLL1O00548 723 aa13.74□□□□□ -0.21
VMP1-210ENST00000589823 TRAFD1O14545 582 aaPredicted RBP13.74□□□□□ -0.21
VMP1-210ENST00000589823 AXIN1O15169 862 aa13.74□□□□□ -0.21
VMP1-210ENST00000589823 HTRA2O43464 458 aaPredicted RBP13.74□□□□□ -0.21
VMP1-210ENST00000589823 ZNF217O75362 1048 aa13.74□□□□□ -0.21
VMP1-210ENST00000589823 CPP00450 1065 aa13.74□□□□□ -0.21
VMP1-210ENST00000589823 C7P10643 843 aa13.74□□□□□ -0.21
VMP1-210ENST00000589823 NFKBIAP25963 317 aa13.74□□□□□ -0.21
VMP1-210ENST00000589823 PTGIRP43119 386 aa13.74□□□□□ -0.21
VMP1-210ENST00000589823 LMAN1P49257 510 aa13.74□□□□□ -0.21
VMP1-210ENST00000589823 VPS41P49754 854 aa13.74□□□□□ -0.21
VMP1-210ENST00000589823 NEK3P51956 506 aa13.74□□□□□ -0.21
VMP1-210ENST00000589823 METAP1P53582 386 aa13.74□□□□□ -0.21
VMP1-210ENST00000589823 EPHB1P54762 984 aa13.74□□□□□ -0.21
VMP1-210ENST00000589823 BASP1P80723 227 aaKnown RBP13.74□□□□□ -0.21
VMP1-210ENST00000589823 GPS1Q13098 491 aa13.74□□□□□ -0.21
VMP1-210ENST00000589823 FAXCQ5TGI0 409 aa13.74□□□□□ -0.21
VMP1-210ENST00000589823 CCDC70Q6NSX1 233 aa13.74□□□□□ -0.21
VMP1-210ENST00000589823 TSSK4Q6SA08 328 aa13.74□□□□□ -0.21
VMP1-210ENST00000589823 USP30Q70CQ3 517 aa13.74□□□□□ -0.21
VMP1-210ENST00000589823 ERN2Q76MJ5 926 aaKnown RBP13.74□□□□□ -0.21
VMP1-210ENST00000589823 PARS2Q7L3T8 475 aaKnown RBP13.74□□□□□ -0.21
VMP1-210ENST00000589823 JAMLQ86YT9 394 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 126.1 ms