RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 HIF1AQ16665 826 aa10.85□□□□□ -0.67
SS18-213ENST00000579640 DNAJC21Q5F1R6 531 aaKnown RBP10.85□□□□□ -0.67
SS18-213ENST00000579640 ARMC3Q5W041 872 aa10.85□□□□□ -0.67
SS18-213ENST00000579640 EMBQ6PCB8 327 aa10.85□□□□□ -0.67
SS18-213ENST00000579640 RANBP10Q6VN20 620 aa10.85□□□□□ -0.67
SS18-213ENST00000579640 CENPUQ71F23 418 aa10.85□□□□□ -0.67
SS18-213ENST00000579640 CHPFQ8IZ52 775 aa10.85□□□□□ -0.67
SS18-213ENST00000579640 SYNPOQ8N3V7 929 aa10.85□□□□□ -0.67
SS18-213ENST00000579640 OR8D1Q8WZ84 308 aa10.85□□□□□ -0.67
SS18-213ENST00000579640 ZNF641Q96N77 438 aaPredicted RBP10.85□□□□□ -0.67
SS18-213ENST00000579640 SERPINB12Q96P63 405 aa10.85□□□□□ -0.67
SS18-213ENST00000579640 NELL2Q99435 816 aa10.85□□□□□ -0.67
SS18-213ENST00000579640 FICDQ9BVA6 458 aa10.85□□□□□ -0.67
SS18-213ENST00000579640 TDRD1Q9BXT4 1180 aaKnown RBP10.85□□□□□ -0.67
SS18-213ENST00000579640 OSBPL1AQ9BXW6 950 aa10.85□□□□□ -0.67
SS18-213ENST00000579640 NEUROG2Q9H2A3 272 aa10.85□□□□□ -0.67
SS18-213ENST00000579640 ARNT2Q9HBZ2 717 aa10.85□□□□□ -0.67
SS18-213ENST00000579640 CASS4Q9NQ75 786 aa10.85□□□□□ -0.67
SS18-213ENST00000579640 ARGLU1Q9NWB6 273 aaPredicted RBP10.85□□□□□ -0.67
SS18-213ENST00000579640 CA14Q9ULX7 337 aa10.85□□□□□ -0.67
SS18-213ENST00000579640 STON1Q9Y6Q2 735 aa10.85□□□□□ -0.67
SS18-213ENST00000579640 F5P12259 2224 aa10.85□□□□□ -0.67
SS18-213ENST00000579640 TTC24A2A3L6 582 aaPredicted RBP10.84□□□□□ -0.67
SS18-213ENST00000579640 GOLGA8MH3BSY2 632 aa10.84□□□□□ -0.67
SS18-213ENST00000579640 HTRA2O43464 458 aaPredicted RBP10.84□□□□□ -0.67
SS18-213ENST00000579640 BNIP3LO60238 219 aa10.84□□□□□ -0.67
SS18-213ENST00000579640 GJB3O75712 270 aa10.84□□□□□ -0.67
SS18-213ENST00000579640 NDST3O95803 873 aa10.84□□□□□ -0.67
SS18-213ENST00000579640 PRNPP04156 253 aa10.84□□□□□ -0.67
SS18-213ENST00000579640 FGF1P05230 155 aa10.84□□□□□ -0.67
SS18-213ENST00000579640 EPHX1P07099 455 aa10.84□□□□□ -0.67
SS18-213ENST00000579640 CHRM1P11229 460 aaPredicted RBP10.84□□□□□ -0.67
SS18-213ENST00000579640 NTSR1P30989 418 aa10.84□□□□□ -0.67
SS18-213ENST00000579640 TIE1P35590 1138 aa10.84□□□□□ -0.67
SS18-213ENST00000579640 STARD6P59095 220 aa10.84□□□□□ -0.67
SS18-213ENST00000579640 RPL26P61254 145 aaKnown RBP10.84□□□□□ -0.67
SS18-213ENST00000579640 CCINQ13939 588 aa10.84□□□□□ -0.67
SS18-213ENST00000579640 LRRC32Q14392 662 aa10.84□□□□□ -0.67
SS18-213ENST00000579640 SPARCL1Q14515 664 aa10.84□□□□□ -0.67
SS18-213ENST00000579640 IHHQ14623 411 aa10.84□□□□□ -0.67
SS18-213ENST00000579640 SLMAPQ14BN4 828 aa10.84□□□□□ -0.67
SS18-213ENST00000579640 PCSK7Q16549 785 aa10.84□□□□□ -0.67
SS18-213ENST00000579640 SYCP2LQ5T4T6 812 aa10.84□□□□□ -0.67
SS18-213ENST00000579640 C9orf64Q5T6V5 341 aa10.84□□□□□ -0.67
SS18-213ENST00000579640 ARMC12Q5T9G4 340 aa10.84□□□□□ -0.67
SS18-213ENST00000579640 ZNF534Q76KX8 674 aa10.84□□□□□ -0.67
SS18-213ENST00000579640 DSG4Q86SJ6 1040 aa10.84□□□□□ -0.67
SS18-213ENST00000579640 DNAAF3Q8N9W5 541 aa10.84□□□□□ -0.67
SS18-213ENST00000579640 LRRC39Q96DD0 335 aa10.84□□□□□ -0.67
SS18-213ENST00000579640 TRIB3Q96RU7 358 aa10.84□□□□□ -0.67
SS18-213ENST00000579640 GABRG3Q99928 467 aa10.84□□□□□ -0.67
SS18-213ENST00000579640 ADGRE3Q9BY15 652 aa10.84□□□□□ -0.67
SS18-213ENST00000579640 FBRSQ9HAH7 460 aa10.84□□□□□ -0.67
SS18-213ENST00000579640 CACNA2D2Q9NY47 1150 aa10.84□□□□□ -0.67
SS18-213ENST00000579640 IL36AQ9UHA7 158 aa10.84□□□□□ -0.67
SS18-213ENST00000579640 RPL26L1Q9UNX3 145 aaKnown RBP10.84□□□□□ -0.67
SS18-213ENST00000579640 E7ESA3 106 aa10.84□□□□□ -0.67
SS18-213ENST00000579640 FZD6O60353 706 aa10.84□□□□□ -0.67
SS18-213ENST00000579640 SIN3BO75182 1162 aa10.84□□□□□ -0.67
SS18-213ENST00000579640 AGTP01019 485 aa10.84□□□□□ -0.67
SS18-213ENST00000579640 MYBL2P10244 700 aa10.84□□□□□ -0.67
SS18-213ENST00000579640 ALADP13716 330 aa10.84□□□□□ -0.67
SS18-213ENST00000579640 HLA-EP13747 358 aa10.84□□□□□ -0.67
SS18-213ENST00000579640 PRKCHP24723 683 aa10.84□□□□□ -0.67
SS18-213ENST00000579640 MAGEA3P43357 314 aa10.84□□□□□ -0.67
SS18-213ENST00000579640 NPY2RP49146 381 aa10.84□□□□□ -0.67
SS18-213ENST00000579640 SEC13P55735 322 aa10.84□□□□□ -0.67
SS18-213ENST00000579640 TRAF2Q12933 501 aa10.84□□□□□ -0.67
SS18-213ENST00000579640 SLC1A5Q15758 541 aa10.84□□□□□ -0.67
SS18-213ENST00000579640 EMC10Q5UCC4 262 aa10.84□□□□□ -0.67
SS18-213ENST00000579640 CAND1Q86VP6 1230 aaKnown RBP10.84□□□□□ -0.67
SS18-213ENST00000579640 RELL1Q8IUW5 271 aa10.84□□□□□ -0.67
SS18-213ENST00000579640 CHST14Q8NCH0 376 aa10.84□□□□□ -0.67
SS18-213ENST00000579640 TMIEQ8NEW7 156 aa10.84□□□□□ -0.67
SS18-213ENST00000579640 OR52K1Q8NGK4 314 aa10.84□□□□□ -0.67
SS18-213ENST00000579640 OR6K2Q8NGY2 324 aa10.84□□□□□ -0.67
SS18-213ENST00000579640 HCAR2Q8TDS4 363 aa10.84□□□□□ -0.67
SS18-213ENST00000579640 AENQ8WTP8 325 aaKnown RBP10.84□□□□□ -0.67
SS18-213ENST00000579640 SPOCK2Q92563 424 aa10.84□□□□□ -0.67
SS18-213ENST00000579640 NSMCE3Q96MG7 304 aa10.84□□□□□ -0.67
SS18-213ENST00000579640 ACOX2Q99424 681 aa10.84□□□□□ -0.67
SS18-213ENST00000579640 SUV39H2Q9H5I1 410 aa10.84□□□□□ -0.67
SS18-213ENST00000579640 ZDHHC6Q9H6R6 413 aa10.84□□□□□ -0.67
SS18-213ENST00000579640 BFARQ9NZS9 450 aa10.84□□□□□ -0.67
SS18-213ENST00000579640 PCDHGC4Q9Y5F7 938 aa10.84□□□□□ -0.67
SS18-213ENST00000579640 WASF2Q9Y6W5 498 aa10.84□□□□□ -0.67
SS18-213ENST00000579640 TCF20Q9UGU0 1960 aaKnown RBP10.83□□□□□ -0.68
SS18-213ENST00000579640 TRAFD1O14545 582 aaPredicted RBP10.83□□□□□ -0.68
SS18-213ENST00000579640 SYNCRIPO60506 623 aaKnown RBP10.83□□□□□ -0.68
SS18-213ENST00000579640 USP12O75317 370 aa10.83□□□□□ -0.68
SS18-213ENST00000579640 PGLSO95336 258 aa10.83□□□□□ -0.68
SS18-213ENST00000579640 PIGNO95427 931 aa10.83□□□□□ -0.68
SS18-213ENST00000579640 ATXN1LP0C7T5 689 aaKnown RBP10.83□□□□□ -0.68
SS18-213ENST00000579640 NFKBIAP25963 317 aa10.83□□□□□ -0.68
SS18-213ENST00000579640 GRIA1P42261 906 aa10.83□□□□□ -0.68
SS18-213ENST00000579640 CAMK2GQ13555 558 aaPredicted RBP10.83□□□□□ -0.68
SS18-213ENST00000579640 STARD3Q14849 445 aa10.83□□□□□ -0.68
SS18-213ENST00000579640 C2orf27AQ580R0 203 aa10.83□□□□□ -0.68
SS18-213ENST00000579640 EOGTQ5NDL2 527 aa10.83□□□□□ -0.68
SS18-213ENST00000579640 CFAP58Q5T655 872 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms