RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 SNX11Q9Y5W9 270 aa8.23□□□□□ -1.09
VPS53-214ENST00000572607 ADAMTS9Q9P2N4 1935 aa8.23□□□□□ -1.09
VPS53-214ENST00000572607 BPTFQ12830 3046 aa8.22□□□□□ -1.09
VPS53-214ENST00000572607 A0A1W2PQU0 124 aa8.22□□□□□ -1.09
VPS53-214ENST00000572607 SSU72P8A0A1W2PR75 194 aa8.22□□□□□ -1.09
VPS53-214ENST00000572607 PRAMEF26H0Y7S4 382 aa8.22□□□□□ -1.09
VPS53-214ENST00000572607 DFFAO00273 331 aa8.22□□□□□ -1.09
VPS53-214ENST00000572607 YKT6O15498 198 aa8.22□□□□□ -1.09
VPS53-214ENST00000572607 FLRT2O43155 660 aa8.22□□□□□ -1.09
VPS53-214ENST00000572607 MFAP3LO75121 409 aa8.22□□□□□ -1.09
VPS53-214ENST00000572607 TMCC1O94876 653 aa8.22□□□□□ -1.09
VPS53-214ENST00000572607 POP4O95707 220 aaKnown RBP8.22□□□□□ -1.09
VPS53-214ENST00000572607 CYP1A2P05177 515 aa8.22□□□□□ -1.09
VPS53-214ENST00000572607 ADRB3P13945 408 aa8.22□□□□□ -1.09
VPS53-214ENST00000572607 ERCC2P18074 760 aa8.22□□□□□ -1.09
VPS53-214ENST00000572607 XPAP23025 273 aaPredicted RBP8.22□□□□□ -1.09
VPS53-214ENST00000572607 AKT2P31751 481 aa8.22□□□□□ -1.09
VPS53-214ENST00000572607 SERPINB6P35237 376 aa8.22□□□□□ -1.09
VPS53-214ENST00000572607 EIF4A3P38919 411 aaKnown RBP8.22□□□□□ -1.09
VPS53-214ENST00000572607 CTSKP43235 329 aa8.22□□□□□ -1.09
VPS53-214ENST00000572607 HCAR3P49019 387 aa8.22□□□□□ -1.09
VPS53-214ENST00000572607 ARRB1P49407 418 aaPredicted RBP8.22□□□□□ -1.09
VPS53-214ENST00000572607 METAP1P53582 386 aa8.22□□□□□ -1.09
VPS53-214ENST00000572607 RPS21P63220 83 aaKnown RBP8.22□□□□□ -1.09
VPS53-214ENST00000572607 SIM1P81133 766 aaPredicted RBP8.22□□□□□ -1.09
VPS53-214ENST00000572607 SERINC3Q13530 473 aa8.22□□□□□ -1.09
VPS53-214ENST00000572607 GRM3Q14832 879 aa8.22□□□□□ -1.09
VPS53-214ENST00000572607 SLC18A3Q16572 532 aa8.22□□□□□ -1.09
VPS53-214ENST00000572607 CA9Q16790 459 aa8.22□□□□□ -1.09
VPS53-214ENST00000572607 SMTNL2Q2TAL5 461 aa8.22□□□□□ -1.09
VPS53-214ENST00000572607 MYLK3Q32MK0 819 aa8.22□□□□□ -1.09
VPS53-214ENST00000572607 ZNF805Q5CZA5 627 aa8.22□□□□□ -1.09
VPS53-214ENST00000572607 ARTNQ5T4W7 220 aa8.22□□□□□ -1.09
VPS53-214ENST00000572607 KIAA1161Q6NSJ0 714 aa8.22□□□□□ -1.09
VPS53-214ENST00000572607 MRPL14Q6P1L8 145 aaKnown RBP8.22□□□□□ -1.09
VPS53-214ENST00000572607 TMCO3Q6UWJ1 677 aa8.22□□□□□ -1.09
VPS53-214ENST00000572607 GDPD4Q6W3E5 623 aa8.22□□□□□ -1.09
VPS53-214ENST00000572607 PIP4P1Q86T03 277 aa8.22□□□□□ -1.09
VPS53-214ENST00000572607 HORMAD1Q86X24 394 aa8.22□□□□□ -1.09
VPS53-214ENST00000572607 BBS5Q8N3I7 341 aa8.22□□□□□ -1.09
VPS53-214ENST00000572607 LZTR1Q8N653 840 aa8.22□□□□□ -1.09
VPS53-214ENST00000572607 NIPA2Q8N8Q9 360 aa8.22□□□□□ -1.09
VPS53-214ENST00000572607 ZSCAN1Q8NBB4 408 aa8.22□□□□□ -1.09
VPS53-214ENST00000572607 OR6K2Q8NGY2 324 aa8.22□□□□□ -1.09
VPS53-214ENST00000572607 FAM174AQ8TBP5 190 aa8.22□□□□□ -1.09
VPS53-214ENST00000572607 ZNF564Q8TBZ8 553 aaPredicted RBP8.22□□□□□ -1.09
VPS53-214ENST00000572607 NSMCE1Q8WV22 266 aa8.22□□□□□ -1.09
VPS53-214ENST00000572607 RAB7BQ96AH8 199 aa8.22□□□□□ -1.09
VPS53-214ENST00000572607 CELF6Q96J87 481 aaKnown RBP8.22□□□□□ -1.09
VPS53-214ENST00000572607 FEM1CQ96JP0 617 aa8.22□□□□□ -1.09
VPS53-214ENST00000572607 DNAJC7Q99615 494 aa8.22□□□□□ -1.09
VPS53-214ENST00000572607 ORAI3Q9BRQ5 295 aa8.22□□□□□ -1.09
VPS53-214ENST00000572607 CINPQ9BW66 212 aaPredicted RBP8.22□□□□□ -1.09
VPS53-214ENST00000572607 TRIM7Q9C029 511 aa8.22□□□□□ -1.09
VPS53-214ENST00000572607 TRIM5Q9C035 493 aa8.22□□□□□ -1.09
VPS53-214ENST00000572607 ABHD10Q9NUJ1 306 aa8.22□□□□□ -1.09
VPS53-214ENST00000572607 STAU2Q9NUL3 570 aaKnown RBP eCLIP8.22□□□□□ -1.09
VPS53-214ENST00000572607 UVRAGQ9P2Y5 699 aa8.22□□□□□ -1.09
VPS53-214ENST00000572607 PCDHGB2Q9Y5G2 931 aa8.22□□□□□ -1.09
VPS53-214ENST00000572607 ACTL7AQ9Y615 435 aa8.22□□□□□ -1.09
VPS53-214ENST00000572607 SLCO1B1Q9Y6L6 691 aa8.22□□□□□ -1.09
VPS53-214ENST00000572607 CEP192Q8TEP8 1941 aa8.22□□□□□ -1.09
VPS53-214ENST00000572607 PLXNB3Q9ULL4 1909 aa8.22□□□□□ -1.09
VPS53-214ENST00000572607 PCDH15Q96QU1 1955 aa8.21□□□□□ -1.09
VPS53-214ENST00000572607 SRRM3A6NNA2 597 aaPredicted RBP8.21□□□□□ -1.1
VPS53-214ENST00000572607 C16orf96A6NNT2 1141 aa8.21□□□□□ -1.1
VPS53-214ENST00000572607 AKR1B15C9JRZ8 316 aaPredicted RBP8.21□□□□□ -1.1
VPS53-214ENST00000572607 TLR4O00206 839 aa8.21□□□□□ -1.1
VPS53-214ENST00000572607 SLC31A1O15431 190 aa8.21□□□□□ -1.1
VPS53-214ENST00000572607 LATO43561 262 aa8.21□□□□□ -1.1
VPS53-214ENST00000572607 TSPAN6O43657 245 aa8.21□□□□□ -1.1
VPS53-214ENST00000572607 SH3BP5O60239 455 aa8.21□□□□□ -1.1
VPS53-214ENST00000572607 PRAMEF11O60813 436 aa8.21□□□□□ -1.1
VPS53-214ENST00000572607 ZNF821O75541 412 aaPredicted RBP8.21□□□□□ -1.1
VPS53-214ENST00000572607 GJB3O75712 270 aa8.21□□□□□ -1.1
VPS53-214ENST00000572607 CD160O95971 181 aa8.21□□□□□ -1.1
VPS53-214ENST00000572607 CAPNS1P04632 268 aa8.21□□□□□ -1.1
VPS53-214ENST00000572607 UGT2B4P06133 528 aa8.21□□□□□ -1.1
VPS53-214ENST00000572607 RARAP10276 462 aa8.21□□□□□ -1.1
VPS53-214ENST00000572607 CD59P13987 128 aa8.21□□□□□ -1.1
VPS53-214ENST00000572607 TIMP2P16035 220 aa8.21□□□□□ -1.1
VPS53-214ENST00000572607 HNRNPA2B1P22626 353 aaKnown RBP8.21□□□□□ -1.1
VPS53-214ENST00000572607 GJC1P36383 396 aa8.21□□□□□ -1.1
VPS53-214ENST00000572607 GRK6P43250 576 aa8.21□□□□□ -1.1
VPS53-214ENST00000572607 PAPOLAP51003 745 aaKnown RBP8.21□□□□□ -1.1
VPS53-214ENST00000572607 CDH6P55285 790 aa8.21□□□□□ -1.1
VPS53-214ENST00000572607 NXPH1P58417 271 aa8.21□□□□□ -1.1
VPS53-214ENST00000572607 TAS2R38P59533 333 aa8.21□□□□□ -1.1
VPS53-214ENST00000572607 BNC1Q01954 994 aa8.21□□□□□ -1.1
VPS53-214ENST00000572607 OVGP1Q12889 678 aa8.21□□□□□ -1.1
VPS53-214ENST00000572607 SGCGQ13326 291 aa8.21□□□□□ -1.1
VPS53-214ENST00000572607 RFTN1Q14699 578 aaPredicted RBP8.21□□□□□ -1.1
VPS53-214ENST00000572607 TRIP6Q15654 476 aaKnown RBP8.21□□□□□ -1.1
VPS53-214ENST00000572607 DPYSL2Q16555 572 aa8.21□□□□□ -1.1
VPS53-214ENST00000572607 ZNF423Q2M1K9 1284 aa8.21□□□□□ -1.1
VPS53-214ENST00000572607 KCNT1Q5JUK3 1230 aa8.21□□□□□ -1.1
VPS53-214ENST00000572607 ZFYVE27Q5T4F4 411 aa8.21□□□□□ -1.1
VPS53-214ENST00000572607 ATXN7L2Q5T6C5 722 aaPredicted RBP8.21□□□□□ -1.1
VPS53-214ENST00000572607 LAYNQ6UX15 382 aa8.21□□□□□ -1.1
VPS53-214ENST00000572607 PARS2Q7L3T8 475 aaKnown RBP8.21□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms