RNA–Protein interactions for RNA: ENST00000561673.1

CLK3-205, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 639 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-205ENST00000561673 MYO1AQ9UBC5 1043 aa10.42□□□□□ -0.74
CLK3-205ENST00000561673 DKK3Q9UBP4 350 aa10.42□□□□□ -0.74
CLK3-205ENST00000561673 LHX3Q9UBR4 397 aa10.42□□□□□ -0.74
CLK3-205ENST00000561673 UBA2Q9UBT2 640 aaPredicted RBP10.42□□□□□ -0.74
CLK3-205ENST00000561673 PLXNB3Q9ULL4 1909 aa10.42□□□□□ -0.74
CLK3-205ENST00000561673 COL5A1P20908 1838 aaPredicted RBP10.42□□□□□ -0.74
CLK3-205ENST00000561673 DOCK9Q9BZ29 2069 aa10.42□□□□□ -0.74
CLK3-205ENST00000561673 SPTY2D1-AS1A0A0U1RR47 76 aa10.41□□□□□ -0.74
CLK3-205ENST00000561673 EIF3CLB5ME19 914 aaKnown RBP10.41□□□□□ -0.74
CLK3-205ENST00000561673 FPGTO14772 594 aa10.41□□□□□ -0.74
CLK3-205ENST00000561673 FFAR2O15552 330 aa10.41□□□□□ -0.74
CLK3-205ENST00000561673 DAPK3O43293 454 aa10.41□□□□□ -0.74
CLK3-205ENST00000561673 PRPSAP2O60256 369 aa10.41□□□□□ -0.74
CLK3-205ENST00000561673 BUB1BO60566 1050 aaPredicted RBP10.41□□□□□ -0.74
CLK3-205ENST00000561673 PRAMEF11O60813 436 aa10.41□□□□□ -0.74
CLK3-205ENST00000561673 MMP20O60882 483 aa10.41□□□□□ -0.74
CLK3-205ENST00000561673 LRCH4O75427 683 aa10.41□□□□□ -0.74
CLK3-205ENST00000561673 PIGNO95427 931 aa10.41□□□□□ -0.74
CLK3-205ENST00000561673 GIMD1P0DJR0 217 aa10.41□□□□□ -0.74
CLK3-205ENST00000561673 MYBL1P10243 752 aa10.41□□□□□ -0.74
CLK3-205ENST00000561673 JUPP14923 745 aa10.41□□□□□ -0.74
CLK3-205ENST00000561673 ERCC2P18074 760 aa10.41□□□□□ -0.74
CLK3-205ENST00000561673 ACP1P24666 158 aa10.41□□□□□ -0.74
CLK3-205ENST00000561673 PBX1P40424 430 aa10.41□□□□□ -0.74
CLK3-205ENST00000561673 RABIFP47224 123 aa10.41□□□□□ -0.74
CLK3-205ENST00000561673 UBASH3AP57075 661 aa10.41□□□□□ -0.74
CLK3-205ENST00000561673 CYP4F3Q08477 520 aa10.41□□□□□ -0.74
CLK3-205ENST00000561673 ILKQ13418 452 aa10.41□□□□□ -0.74
CLK3-205ENST00000561673 PPP6R3Q5H9R7 873 aaPredicted RBP10.41□□□□□ -0.74
CLK3-205ENST00000561673 TPRG1LQ5T0D9 272 aa10.41□□□□□ -0.74
CLK3-205ENST00000561673 AFMIDQ63HM1 303 aa10.41□□□□□ -0.74
CLK3-205ENST00000561673 HGSNATQ68CP4 663 aa10.41□□□□□ -0.74
CLK3-205ENST00000561673 KDM7AQ6ZMT4 941 aa10.41□□□□□ -0.74
CLK3-205ENST00000561673 RFX8Q6ZV50 586 aa10.41□□□□□ -0.74
CLK3-205ENST00000561673 PSTKQ8IV42 348 aaKnown RBP10.41□□□□□ -0.74
CLK3-205ENST00000561673 ARHGAP12Q8IWW6 846 aa10.41□□□□□ -0.74
CLK3-205ENST00000561673 PDCD7Q8N8D1 485 aaKnown RBP10.41□□□□□ -0.74
CLK3-205ENST00000561673 OR4C6Q8NH72 309 aa10.41□□□□□ -0.74
CLK3-205ENST00000561673 ASB12Q8WXK4 309 aa10.41□□□□□ -0.74
CLK3-205ENST00000561673 ARHGEF26Q96DR7 871 aa10.41□□□□□ -0.74
CLK3-205ENST00000561673 TRIM11Q96F44 468 aa10.41□□□□□ -0.74
CLK3-205ENST00000561673 EIF3CQ99613 913 aaKnown RBP10.41□□□□□ -0.74
CLK3-205ENST00000561673 DNAJC28Q9NX36 388 aa10.41□□□□□ -0.74
CLK3-205ENST00000561673 CWC15Q9P013 229 aaKnown RBP10.41□□□□□ -0.74
CLK3-205ENST00000561673 KLF15Q9UIH9 416 aa10.41□□□□□ -0.74
CLK3-205ENST00000561673 SCINQ9Y6U3 715 aa10.41□□□□□ -0.74
CLK3-205ENST00000561673 PTPRBP23467 1997 aa10.41□□□□□ -0.74
CLK3-205ENST00000561673 CHD5Q8TDI0 1954 aa10.41□□□□□ -0.74
CLK3-205ENST00000561673 ANKRD11Q6UB99 2663 aaPredicted RBP10.4□□□□□ -0.74
CLK3-205ENST00000561673 A0A1W2PQJ5 194 aa10.4□□□□□ -0.74
CLK3-205ENST00000561673 ARHGAP42A6NI28 874 aa10.4□□□□□ -0.74
CLK3-205ENST00000561673 SCAMP1O15126 338 aa10.4□□□□□ -0.74
CLK3-205ENST00000561673 PALMO75781 387 aa10.4□□□□□ -0.74
CLK3-205ENST00000561673 CSF2P04141 144 aa10.4□□□□□ -0.74
CLK3-205ENST00000561673 IL1R2P27930 398 aa10.4□□□□□ -0.74
CLK3-205ENST00000561673 PCK1P35558 622 aa10.4□□□□□ -0.74
CLK3-205ENST00000561673 HCAR3P49019 387 aa10.4□□□□□ -0.74
CLK3-205ENST00000561673 PFN3P60673 137 aa10.4□□□□□ -0.74
CLK3-205ENST00000561673 HNRNPKP61978 463 aaKnown RBP eCLIP10.4□□□□□ -0.74
CLK3-205ENST00000561673 TPM4P67936 248 aa10.4□□□□□ -0.74
CLK3-205ENST00000561673 TARDBPQ13148 414 aaKnown RBP eCLIP10.4□□□□□ -0.74
CLK3-205ENST00000561673 DPYSQ14117 519 aa10.4□□□□□ -0.74
CLK3-205ENST00000561673 PDE1CQ14123 709 aaPredicted RBP10.4□□□□□ -0.74
CLK3-205ENST00000561673 HS1BP3Q53T59 392 aa10.4□□□□□ -0.74
CLK3-205ENST00000561673 HES3Q5TGS1 186 aa10.4□□□□□ -0.74
CLK3-205ENST00000561673 ARHGAP36Q6ZRI8 547 aa10.4□□□□□ -0.74
CLK3-205ENST00000561673 TP53INP2Q8IXH6 220 aa10.4□□□□□ -0.74
CLK3-205ENST00000561673 NPWQ8N729 165 aa10.4□□□□□ -0.74
CLK3-205ENST00000561673 TSEN2Q8NCE0 465 aaKnown RBP10.4□□□□□ -0.74
CLK3-205ENST00000561673 HCAR2Q8TDS4 363 aa10.4□□□□□ -0.74
CLK3-205ENST00000561673 CXorf40AQ8TE69 158 aa10.4□□□□□ -0.74
CLK3-205ENST00000561673 CPLX3Q8WVH0 158 aa10.4□□□□□ -0.74
CLK3-205ENST00000561673 SYN2Q92777 582 aaPredicted RBP10.4□□□□□ -0.74
CLK3-205ENST00000561673 NCAPGQ9BPX3 1015 aa10.4□□□□□ -0.74
CLK3-205ENST00000561673 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP10.4□□□□□ -0.74
CLK3-205ENST00000561673 WRAP53Q9BUR4 548 aaKnown RBP10.4□□□□□ -0.74
CLK3-205ENST00000561673 SUV39H2Q9H5I1 410 aa10.4□□□□□ -0.74
CLK3-205ENST00000561673 MRPL47Q9HD33 250 aaKnown RBP10.4□□□□□ -0.74
CLK3-205ENST00000561673 MBNL1Q9NR56 388 aaKnown RBP10.4□□□□□ -0.74
CLK3-205ENST00000561673 NLGN3Q9NZ94 848 aa10.4□□□□□ -0.74
CLK3-205ENST00000561673 DKK4Q9UBT3 224 aa10.4□□□□□ -0.74
CLK3-205ENST00000561673 IPO11Q9UI26 975 aaKnown RBP10.4□□□□□ -0.74
CLK3-205ENST00000561673 CAPN11Q9UMQ6 739 aa10.4□□□□□ -0.74
CLK3-205ENST00000561673 BZW2Q9Y6E2 419 aaKnown RBP10.4□□□□□ -0.74
CLK3-205ENST00000561673 PKD1L2Q7Z442 2459 aa10.39□□□□□ -0.75
CLK3-205ENST00000561673 NEMP2A6NFY4 417 aa10.39□□□□□ -0.75
CLK3-205ENST00000561673 K7ESM1 405 aa10.39□□□□□ -0.75
CLK3-205ENST00000561673 DFFAO00273 331 aa10.39□□□□□ -0.75
CLK3-205ENST00000561673 NEBLO76041 1014 aa10.39□□□□□ -0.75
CLK3-205ENST00000561673 TM7SF2O76062 418 aa10.39□□□□□ -0.75
CLK3-205ENST00000561673 SERPING1P05155 500 aa10.39□□□□□ -0.75
CLK3-205ENST00000561673 CKMT1AP12532 417 aa10.39□□□□□ -0.75
CLK3-205ENST00000561673 MYF5P13349 255 aa10.39□□□□□ -0.75
CLK3-205ENST00000561673 NME1P15531 152 aaKnown RBP10.39□□□□□ -0.75
CLK3-205ENST00000561673 TCF4P15884 667 aa10.39□□□□□ -0.75
CLK3-205ENST00000561673 HNF1BP35680 557 aa10.39□□□□□ -0.75
CLK3-205ENST00000561673 RGRP47804 291 aa10.39□□□□□ -0.75
CLK3-205ENST00000561673 CSNK1DP48730 415 aa10.39□□□□□ -0.75
CLK3-205ENST00000561673 ZBED6P86452 979 aa10.39□□□□□ -0.75
CLK3-205ENST00000561673 INSM1Q01101 510 aaPredicted RBP10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms