RNA–Protein interactions for RNA: ENST00000559989.1

CSPG4P12-202, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 12, humanhuman

TSL 1 (best) BASIC

Gene CSPG4P12, Length 7,790 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P12-202ENST00000559989 GPD2P43304 727 aa13.95□□□□□ -0.18
CSPG4P12-202ENST00000559989 PTPRNQ16849 979 aa13.95□□□□□ -0.18
CSPG4P12-202ENST00000559989 SPOCD1Q6ZMY3 1216 aa13.95□□□□□ -0.18
CSPG4P12-202ENST00000559989 CLIP3Q96DZ5 547 aa13.95□□□□□ -0.18
CSPG4P12-202ENST00000559989 APBA2Q99767 749 aa13.95□□□□□ -0.18
CSPG4P12-202ENST00000559989 APOL2Q9BQE5 337 aa13.95□□□□□ -0.18
CSPG4P12-202ENST00000559989 DCLK3Q9C098 648 aa13.95□□□□□ -0.18
CSPG4P12-202ENST00000559989 SLC12A8A0AV02 714 aa13.95□□□□□ -0.18
CSPG4P12-202ENST00000559989 SH3D21A4FU49 640 aa13.95□□□□□ -0.18
CSPG4P12-202ENST00000559989 HACD1B0YJ81 288 aa13.95□□□□□ -0.18
CSPG4P12-202ENST00000559989 JCHAINP01591 159 aa13.95□□□□□ -0.18
CSPG4P12-202ENST00000559989 RPA3P35244 121 aaPredicted RBP13.95□□□□□ -0.18
CSPG4P12-202ENST00000559989 PEX6Q13608 980 aa13.95□□□□□ -0.18
CSPG4P12-202ENST00000559989 FAAH2Q6GMR7 532 aa13.95□□□□□ -0.18
CSPG4P12-202ENST00000559989 FRRS1Q6ZNA5 592 aa13.95□□□□□ -0.18
CSPG4P12-202ENST00000559989 RNF180Q86T96 592 aa13.95□□□□□ -0.18
CSPG4P12-202ENST00000559989 NOA1Q8NC60 698 aaKnown RBP13.95□□□□□ -0.18
CSPG4P12-202ENST00000559989 S100PBPQ96BU1 408 aa13.95□□□□□ -0.18
CSPG4P12-202ENST00000559989 PPP1R16AQ96I34 528 aa13.95□□□□□ -0.18
CSPG4P12-202ENST00000559989 DNAJC11Q9NVH1 559 aa13.95□□□□□ -0.18
CSPG4P12-202ENST00000559989 ARL5AQ9Y689 179 aa13.95□□□□□ -0.18
CSPG4P12-202ENST00000559989 NADKO95544 446 aaPredicted RBP13.95□□□□□ -0.18
CSPG4P12-202ENST00000559989 FTH1P02794 183 aa13.95□□□□□ -0.18
CSPG4P12-202ENST00000559989 AMD1P17707 334 aa13.95□□□□□ -0.18
CSPG4P12-202ENST00000559989 RPL14P50914 215 aaKnown RBP13.95□□□□□ -0.18
CSPG4P12-202ENST00000559989 FNDC3BQ53EP0 1204 aaKnown RBP13.95□□□□□ -0.18
CSPG4P12-202ENST00000559989 SHQ1Q6PI26 577 aaKnown RBP13.95□□□□□ -0.18
CSPG4P12-202ENST00000559989 MTMR12Q9C0I1 747 aa13.95□□□□□ -0.18
CSPG4P12-202ENST00000559989 ATXN3LQ9H3M9 355 aa13.95□□□□□ -0.18
CSPG4P12-202ENST00000559989 RBMX2Q9Y388 322 aaKnown RBP13.95□□□□□ -0.18
CSPG4P12-202ENST00000559989 A0A096LPK6 155 aa13.95□□□□□ -0.18
CSPG4P12-202ENST00000559989 C5orf51A6NDU8 294 aa13.95□□□□□ -0.18
CSPG4P12-202ENST00000559989 SNAPC5O75971 98 aa13.95□□□□□ -0.18
CSPG4P12-202ENST00000559989 KLRC1P26715 233 aa13.95□□□□□ -0.18
CSPG4P12-202ENST00000559989 FMO4P31512 558 aa13.95□□□□□ -0.18
CSPG4P12-202ENST00000559989 EIF5AL1Q6IS14 154 aaKnown RBP13.95□□□□□ -0.18
CSPG4P12-202ENST00000559989 RNF148Q8N7C7 305 aa13.95□□□□□ -0.18
CSPG4P12-202ENST00000559989 IL17REQ8NFR9 667 aa13.95□□□□□ -0.18
CSPG4P12-202ENST00000559989 GATAD2BQ8WXI9 593 aa13.95□□□□□ -0.18
CSPG4P12-202ENST00000559989 NXPE2Q96DL1 559 aa13.95□□□□□ -0.18
CSPG4P12-202ENST00000559989 MTPAPQ9NVV4 582 aaKnown RBP eCLIP13.95□□□□□ -0.18
CSPG4P12-202ENST00000559989 NKIRAS2Q9NYR9 191 aa13.95□□□□□ -0.18
CSPG4P12-202ENST00000559989 SLC30A4O14863 429 aa13.94□□□□□ -0.18
CSPG4P12-202ENST00000559989 WEE1P30291 646 aa13.94□□□□□ -0.18
CSPG4P12-202ENST00000559989 AKT2P31751 481 aa13.94□□□□□ -0.18
CSPG4P12-202ENST00000559989 FXR1P51114 621 aaKnown RBP eCLIP13.94□□□□□ -0.18
CSPG4P12-202ENST00000559989 ALDH5A1P51649 535 aaPredicted RBP13.94□□□□□ -0.18
CSPG4P12-202ENST00000559989 PRAMEF17Q5VTA0 474 aa13.94□□□□□ -0.18
CSPG4P12-202ENST00000559989 PPP3R2Q96LZ3 170 aa13.94□□□□□ -0.18
CSPG4P12-202ENST00000559989 ANKEF1Q9NU02 776 aa13.94□□□□□ -0.18
CSPG4P12-202ENST00000559989 GYPCP04921 128 aa13.94□□□□□ -0.18
CSPG4P12-202ENST00000559989 PGAM2P15259 253 aa13.94□□□□□ -0.18
CSPG4P12-202ENST00000559989 PSMA1P25786 263 aaKnown RBP13.94□□□□□ -0.18
CSPG4P12-202ENST00000559989 VMACQ2NL98 169 aa13.94□□□□□ -0.18
CSPG4P12-202ENST00000559989 TMC8Q8IU68 726 aa13.94□□□□□ -0.18
CSPG4P12-202ENST00000559989 SLITRK4Q8IW52 837 aa13.94□□□□□ -0.18
CSPG4P12-202ENST00000559989 CDYL2Q8N8U2 506 aa13.94□□□□□ -0.18
CSPG4P12-202ENST00000559989 CPVLQ9H3G5 476 aa13.94□□□□□ -0.18
CSPG4P12-202ENST00000559989 ZFYVE28Q9HCC9 887 aa13.94□□□□□ -0.18
CSPG4P12-202ENST00000559989 MOCS1Q9NZB8 636 aa13.94□□□□□ -0.18
CSPG4P12-202ENST00000559989 GGA2Q9UJY4 613 aa13.94□□□□□ -0.18
CSPG4P12-202ENST00000559989 PCDHGB5Q9Y5G0 923 aa13.94□□□□□ -0.18
CSPG4P12-202ENST00000559989 SPTLC1O15269 473 aa13.94□□□□□ -0.18
CSPG4P12-202ENST00000559989 PGRP06401 933 aa13.94□□□□□ -0.18
CSPG4P12-202ENST00000559989 ACO1P21399 889 aaKnown RBP13.94□□□□□ -0.18
CSPG4P12-202ENST00000559989 FOLH1Q04609 750 aa13.94□□□□□ -0.18
CSPG4P12-202ENST00000559989 FAM91A1Q658Y4 838 aa13.94□□□□□ -0.18
CSPG4P12-202ENST00000559989 CSGALNACT1Q8TDX6 532 aa13.94□□□□□ -0.18
CSPG4P12-202ENST00000559989 PARK7Q99497 189 aaKnown RBP13.94□□□□□ -0.18
CSPG4P12-202ENST00000559989 DCLK1O15075 740 aa13.94□□□□□ -0.18
CSPG4P12-202ENST00000559989 KCNA6P17658 529 aa13.94□□□□□ -0.18
CSPG4P12-202ENST00000559989 ZC2HC1CQ53FD0 456 aaPredicted RBP13.94□□□□□ -0.18
CSPG4P12-202ENST00000559989 ZNF433Q8N7K0 673 aaPredicted RBP13.94□□□□□ -0.18
CSPG4P12-202ENST00000559989 RNPEPL1Q9HAU8 725 aa13.94□□□□□ -0.18
CSPG4P12-202ENST00000559989 MAU2Q9Y6X3 613 aa13.94□□□□□ -0.18
CSPG4P12-202ENST00000559989 H0YJX3 145 aa13.94□□□□□ -0.18
CSPG4P12-202ENST00000559989 NDUFS2O75306 463 aa13.94□□□□□ -0.18
CSPG4P12-202ENST00000559989 OR1E1P30953 314 aa13.94□□□□□ -0.18
CSPG4P12-202ENST00000559989 DIRAS2Q96HU8 199 aa13.94□□□□□ -0.18
CSPG4P12-202ENST00000559989 SCGB3A2Q96PL1 93 aa13.94□□□□□ -0.18
CSPG4P12-202ENST00000559989 KLQ9UEF7 1012 aa13.94□□□□□ -0.18
CSPG4P12-202ENST00000559989 PHF24Q9UPV7 400 aa13.94□□□□□ -0.18
CSPG4P12-202ENST00000559989 H3BM21 787 aa13.94□□□□□ -0.18
CSPG4P12-202ENST00000559989 DHX15O43143 795 aaKnown RBP13.94□□□□□ -0.18
CSPG4P12-202ENST00000559989 ZC3H11AO75152 810 aaKnown RBP eCLIP13.94□□□□□ -0.18
CSPG4P12-202ENST00000559989 RNF43Q68DV7 783 aa13.94□□□□□ -0.18
CSPG4P12-202ENST00000559989 PI16Q6UXB8 463 aa13.94□□□□□ -0.18
CSPG4P12-202ENST00000559989 BTBD19C9JJ37 291 aa13.93□□□□□ -0.18
CSPG4P12-202ENST00000559989 HOXC8P31273 242 aa13.93□□□□□ -0.18
CSPG4P12-202ENST00000559989 TSPAN5P62079 268 aa13.93□□□□□ -0.18
CSPG4P12-202ENST00000559989 BCL2L1Q07817 233 aa13.93□□□□□ -0.18
CSPG4P12-202ENST00000559989 MTMR2Q13614 643 aa13.93□□□□□ -0.18
CSPG4P12-202ENST00000559989 CRY2Q49AN0 593 aa13.93□□□□□ -0.18
CSPG4P12-202ENST00000559989 SLC45A4Q5BKX6 768 aa13.93□□□□□ -0.18
CSPG4P12-202ENST00000559989 CRTC3Q6UUV7 619 aa13.93□□□□□ -0.18
CSPG4P12-202ENST00000559989 SENP6Q9GZR1 1112 aaPredicted RBP13.93□□□□□ -0.18
CSPG4P12-202ENST00000559989 RAMP2O60895 175 aa13.93□□□□□ -0.18
CSPG4P12-202ENST00000559989 MAP3K6O95382 1288 aa13.93□□□□□ -0.18
CSPG4P12-202ENST00000559989 FADS2O95864 444 aaKnown RBP13.93□□□□□ -0.18
CSPG4P12-202ENST00000559989 RPLP2P05387 115 aaKnown RBP13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 70.9 ms