RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 SDHDO14521 159 aa11.43□□□□□ -0.58
LDLR-208ENST00000558518 ACOT8O14734 319 aa11.43□□□□□ -0.58
LDLR-208ENST00000558518 MDM4O15151 490 aa11.43□□□□□ -0.58
LDLR-208ENST00000558518 NRP2O60462 931 aa11.43□□□□□ -0.58
LDLR-208ENST00000558518 TSPY1Q01534 308 aa11.43□□□□□ -0.58
LDLR-208ENST00000558518 DPYSL2Q16555 572 aa11.43□□□□□ -0.58
LDLR-208ENST00000558518 HMBOX1Q6NT76 420 aa11.43□□□□□ -0.58
LDLR-208ENST00000558518 NCCRP1Q6ZVX7 275 aaPredicted RBP11.43□□□□□ -0.58
LDLR-208ENST00000558518 ASB9Q96DX5 294 aa11.43□□□□□ -0.58
LDLR-208ENST00000558518 FANCEQ9HB96 536 aa11.43□□□□□ -0.58
LDLR-208ENST00000558518 LTB4R2Q9NPC1 389 aa11.43□□□□□ -0.58
LDLR-208ENST00000558518 CIDEBQ9UHD4 219 aa11.43□□□□□ -0.58
LDLR-208ENST00000558518 MID2Q9UJV3 735 aa11.43□□□□□ -0.58
LDLR-208ENST00000558518 USP22Q9UPT9 525 aa11.43□□□□□ -0.58
LDLR-208ENST00000558518 DHRS12A0PJE2 317 aa11.43□□□□□ -0.58
LDLR-208ENST00000558518 TMEM114B3SHH9 223 aa11.43□□□□□ -0.58
LDLR-208ENST00000558518 FBP2O00757 339 aa11.43□□□□□ -0.58
LDLR-208ENST00000558518 SPTLC1O15269 473 aa11.43□□□□□ -0.58
LDLR-208ENST00000558518 OXTRP30559 389 aa11.43□□□□□ -0.58
LDLR-208ENST00000558518 CTBSQ01459 385 aa11.43□□□□□ -0.58
LDLR-208ENST00000558518 RHDQ02161 417 aa11.43□□□□□ -0.58
LDLR-208ENST00000558518 RAB39AQ14964 217 aa11.43□□□□□ -0.58
LDLR-208ENST00000558518 ADRM1Q16186 407 aa11.43□□□□□ -0.58
LDLR-208ENST00000558518 CATSPER4Q7RTX7 472 aa11.43□□□□□ -0.58
LDLR-208ENST00000558518 AFAP1L2Q8N4X5 818 aa11.43□□□□□ -0.58
LDLR-208ENST00000558518 PSD4Q8NDX1 1056 aa11.43□□□□□ -0.58
LDLR-208ENST00000558518 ESAMQ96AP7 390 aa11.43□□□□□ -0.58
LDLR-208ENST00000558518 COX4I2Q96KJ9 171 aa11.43□□□□□ -0.58
LDLR-208ENST00000558518 NAT9Q9BTE0 207 aa11.43□□□□□ -0.58
LDLR-208ENST00000558518 POLE4Q9NR33 117 aa11.43□□□□□ -0.58
LDLR-208ENST00000558518 SYNPO2Q9UMS6 1093 aa11.43□□□□□ -0.58
LDLR-208ENST00000558518 MAGED1Q9Y5V3 778 aaPredicted RBP11.43□□□□□ -0.58
LDLR-208ENST00000558518 SH3PXD2BA1X283 911 aa11.42□□□□□ -0.58
LDLR-208ENST00000558518 TMEM247A6NEH6 219 aa11.42□□□□□ -0.58
LDLR-208ENST00000558518 SIX3O95343 332 aaPredicted RBP11.42□□□□□ -0.58
LDLR-208ENST00000558518 SNAP29O95721 258 aa11.42□□□□□ -0.58
LDLR-208ENST00000558518 PSMA4P25789 261 aaKnown RBP11.42□□□□□ -0.58
LDLR-208ENST00000558518 YBX1P67809 324 aaKnown RBP11.42□□□□□ -0.58
LDLR-208ENST00000558518 ECT2LQ008S8 904 aa11.42□□□□□ -0.58
LDLR-208ENST00000558518 MBTD1Q05BQ5 628 aa11.42□□□□□ -0.58
LDLR-208ENST00000558518 NSUN2Q08J23 767 aaKnown RBP eCLIP11.42□□□□□ -0.58
LDLR-208ENST00000558518 TNFAIP1Q13829 316 aa11.42□□□□□ -0.58
LDLR-208ENST00000558518 PAN2Q504Q3 1202 aaKnown RBP11.42□□□□□ -0.58
LDLR-208ENST00000558518 ZNF789Q5FWF6 425 aa11.42□□□□□ -0.58
LDLR-208ENST00000558518 XRRA1Q6P2D8 792 aa11.42□□□□□ -0.58
LDLR-208ENST00000558518 ARHGAP36Q6ZRI8 547 aa11.42□□□□□ -0.58
LDLR-208ENST00000558518 PIWIL3Q7Z3Z3 882 aaKnown RBP11.42□□□□□ -0.58
LDLR-208ENST00000558518 CUZD1Q86UP6 607 aa11.42□□□□□ -0.58
LDLR-208ENST00000558518 MICALL2Q8IY33 904 aa11.42□□□□□ -0.58
LDLR-208ENST00000558518 LSMEM2Q8N112 164 aa11.42□□□□□ -0.58
LDLR-208ENST00000558518 RTP4Q96DX8 246 aa11.42□□□□□ -0.58
LDLR-208ENST00000558518 KCNA7Q96RP8 456 aa11.42□□□□□ -0.58
LDLR-208ENST00000558518 BEGAINQ9BUH8 593 aa11.42□□□□□ -0.58
LDLR-208ENST00000558518 MUC3BQ9H195 1237 aa11.42□□□□□ -0.58
LDLR-208ENST00000558518 EPB41L1Q9H4G0 881 aa11.42□□□□□ -0.58
LDLR-208ENST00000558518 SLC8A2Q9UPR5 921 aa11.42□□□□□ -0.58
LDLR-208ENST00000558518 SHROOM3Q8TF72 1996 aa11.42□□□□□ -0.58
LDLR-208ENST00000558518 ZCWPW2A0A1B0GU75 182 aa11.42□□□□□ -0.58
LDLR-208ENST00000558518 TRPC5OSA6NMA1 111 aa11.42□□□□□ -0.58
LDLR-208ENST00000558518 CABYRO75952 493 aa11.42□□□□□ -0.58
LDLR-208ENST00000558518 ALDH1A2O94788 518 aa11.42□□□□□ -0.58
LDLR-208ENST00000558518 BCL10O95999 233 aa11.42□□□□□ -0.58
LDLR-208ENST00000558518 PGK1P00558 417 aa11.42□□□□□ -0.58
LDLR-208ENST00000558518 LINC00032P0C843 101 aa11.42□□□□□ -0.58
LDLR-208ENST00000558518 SLC35E2BP0CK96 405 aa11.42□□□□□ -0.58
LDLR-208ENST00000558518 CDH3P22223 829 aa11.42□□□□□ -0.58
LDLR-208ENST00000558518 BDNFP23560 247 aa11.42□□□□□ -0.58
LDLR-208ENST00000558518 FASP25445 335 aa11.42□□□□□ -0.58
LDLR-208ENST00000558518 PRDX6P30041 224 aa11.42□□□□□ -0.58
LDLR-208ENST00000558518 APLP1P51693 650 aa11.42□□□□□ -0.58
LDLR-208ENST00000558518 RAD23AP54725 363 aa11.42□□□□□ -0.58
LDLR-208ENST00000558518 PGS1Q32NB8 556 aa11.42□□□□□ -0.58
LDLR-208ENST00000558518 RABL3Q5HYI8 236 aa11.42□□□□□ -0.58
LDLR-208ENST00000558518 CCDC81Q6ZN84 652 aa11.42□□□□□ -0.58
LDLR-208ENST00000558518 RALGPS2Q86X27 583 aaPredicted RBP11.42□□□□□ -0.58
LDLR-208ENST00000558518 SLC7A5P1Q8MH63 180 aa11.42□□□□□ -0.58
LDLR-208ENST00000558518 SGCDQ92629 289 aa11.42□□□□□ -0.58
LDLR-208ENST00000558518 TMEM74Q96NL1 305 aa11.42□□□□□ -0.58
LDLR-208ENST00000558518 TCF12Q99081 682 aa11.42□□□□□ -0.58
LDLR-208ENST00000558518 C1orf50Q9BV19 199 aa11.42□□□□□ -0.58
LDLR-208ENST00000558518 NIFKQ9BYG3 293 aaKnown RBP11.42□□□□□ -0.58
LDLR-208ENST00000558518 PLEKHA5Q9HAU0 1116 aa11.42□□□□□ -0.58
LDLR-208ENST00000558518 AS3MTQ9HBK9 375 aa11.42□□□□□ -0.58
LDLR-208ENST00000558518 PIGVQ9NUD9 493 aa11.42□□□□□ -0.58
LDLR-208ENST00000558518 SETD4Q9NVD3 440 aa11.42□□□□□ -0.58
LDLR-208ENST00000558518 FAIMQ9NVQ4 179 aa11.42□□□□□ -0.58
LDLR-208ENST00000558518 GMEB1Q9Y692 573 aa11.42□□□□□ -0.58
LDLR-208ENST00000558518 CFAP99D6REC4 459 aa11.42□□□□□ -0.58
LDLR-208ENST00000558518 AP1G1O43747 822 aa11.42□□□□□ -0.58
LDLR-208ENST00000558518 BEST1O76090 585 aa11.42□□□□□ -0.58
LDLR-208ENST00000558518 PIRTP0C851 137 aa11.42□□□□□ -0.58
LDLR-208ENST00000558518 SNX16P57768 344 aa11.42□□□□□ -0.58
LDLR-208ENST00000558518 MAXP61244 160 aa11.42□□□□□ -0.58
LDLR-208ENST00000558518 CDK18Q07002 472 aa11.42□□□□□ -0.58
LDLR-208ENST00000558518 SFSWAPQ12872 951 aaKnown RBP11.42□□□□□ -0.58
LDLR-208ENST00000558518 DNASE1L3Q13609 305 aa11.42□□□□□ -0.58
LDLR-208ENST00000558518 ZC3HC1Q86WB0 502 aaKnown RBP11.42□□□□□ -0.58
LDLR-208ENST00000558518 DHRSXQ8N5I4 330 aa11.42□□□□□ -0.58
LDLR-208ENST00000558518 SLC15A4Q8N697 577 aa11.42□□□□□ -0.58
LDLR-208ENST00000558518 HPS1Q92902 700 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms