RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-223ENST00000557005 EFCAB10A6NFE3 127 aa5.02□□□□□ -1.61
SYNE2-223ENST00000557005 TK2O00142 265 aa5.02□□□□□ -1.61
SYNE2-223ENST00000557005 HDAC3O15379 428 aa5.02□□□□□ -1.61
SYNE2-223ENST00000557005 SEC22BO75396 215 aa5.02□□□□□ -1.61
SYNE2-223ENST00000557005 MAFO75444 373 aaPredicted RBP5.02□□□□□ -1.61
SYNE2-223ENST00000557005 GCATO75600 419 aa5.02□□□□□ -1.61
SYNE2-223ENST00000557005 CNPP09543 421 aaKnown RBP5.02□□□□□ -1.61
SYNE2-223ENST00000557005 UGT1A6P19224 532 aa5.02□□□□□ -1.61
SYNE2-223ENST00000557005 UGT1A1P22309 533 aa5.02□□□□□ -1.61
SYNE2-223ENST00000557005 UGT1A4P22310 534 aa5.02□□□□□ -1.61
SYNE2-223ENST00000557005 PBLDP30039 288 aaPredicted RBP5.02□□□□□ -1.61
SYNE2-223ENST00000557005 UGT1A3P35503 534 aa5.02□□□□□ -1.61
SYNE2-223ENST00000557005 UGT1A5P35504 534 aa5.02□□□□□ -1.61
SYNE2-223ENST00000557005 GNA12Q03113 381 aa5.02□□□□□ -1.61
SYNE2-223ENST00000557005 TWF1Q12792 350 aa5.02□□□□□ -1.61
SYNE2-223ENST00000557005 MADCAM1Q13477 382 aa5.02□□□□□ -1.61
SYNE2-223ENST00000557005 TRIP4Q15650 581 aaPredicted RBP5.02□□□□□ -1.61
SYNE2-223ENST00000557005 INAQ16352 499 aa5.02□□□□□ -1.61
SYNE2-223ENST00000557005 CMPK2Q5EBM0 449 aa5.02□□□□□ -1.61
SYNE2-223ENST00000557005 LDB1Q86U70 411 aaPredicted RBP5.02□□□□□ -1.61
SYNE2-223ENST00000557005 NKD2Q969F2 451 aaPredicted RBP5.02□□□□□ -1.61
SYNE2-223ENST00000557005 GJD4Q96KN9 370 aaPredicted RBP5.02□□□□□ -1.61
SYNE2-223ENST00000557005 SLC13A4Q9UKG4 626 aa5.02□□□□□ -1.61
SYNE2-223ENST00000557005 C2orf81A6NN90 581 aa5.02□□□□□ -1.61
SYNE2-223ENST00000557005 FAM25AB3EWG3 89 aa5.02□□□□□ -1.61
SYNE2-223ENST00000557005 FAM25CB3EWG5 89 aa5.02□□□□□ -1.61
SYNE2-223ENST00000557005 FAM25GB3EWG6 89 aa5.02□□□□□ -1.61
SYNE2-223ENST00000557005 SYNCRIPO60506 623 aaKnown RBP5.02□□□□□ -1.61
SYNE2-223ENST00000557005 UBA1P22314 1058 aaKnown RBP5.02□□□□□ -1.61
SYNE2-223ENST00000557005 ELK4P28324 431 aa5.02□□□□□ -1.61
SYNE2-223ENST00000557005 FMO3P31513 532 aa5.02□□□□□ -1.61
SYNE2-223ENST00000557005 PNPLA4P41247 253 aa5.02□□□□□ -1.61
SYNE2-223ENST00000557005 RPL26P61254 145 aaKnown RBP5.02□□□□□ -1.61
SYNE2-223ENST00000557005 GBE1Q04446 702 aa5.02□□□□□ -1.61
SYNE2-223ENST00000557005 EFEMP1Q12805 493 aa5.02□□□□□ -1.61
SYNE2-223ENST00000557005 COX10Q12887 443 aa5.02□□□□□ -1.61
SYNE2-223ENST00000557005 BNIP3Q12983 259 aa5.02□□□□□ -1.61
SYNE2-223ENST00000557005 GK3PQ14409 553 aa5.02□□□□□ -1.61
SYNE2-223ENST00000557005 PSMD5Q16401 504 aa5.02□□□□□ -1.61
SYNE2-223ENST00000557005 PKN3Q6P5Z2 889 aa5.02□□□□□ -1.61
SYNE2-223ENST00000557005 KLHL17Q6TDP4 642 aa5.02□□□□□ -1.61
SYNE2-223ENST00000557005 SLC26A9Q7LBE3 791 aa5.02□□□□□ -1.61
SYNE2-223ENST00000557005 ZDHHC13Q8IUH4 622 aa5.02□□□□□ -1.61
SYNE2-223ENST00000557005 AHI1Q8N157 1196 aa5.02□□□□□ -1.61
SYNE2-223ENST00000557005 SEPT8Q92599 483 aa5.02□□□□□ -1.61
SYNE2-223ENST00000557005 ISOC1Q96CN7 298 aa5.02□□□□□ -1.61
SYNE2-223ENST00000557005 MTERF3Q96E29 417 aa5.02□□□□□ -1.61
SYNE2-223ENST00000557005 FAM163AQ96GL9 167 aaPredicted RBP5.02□□□□□ -1.61
SYNE2-223ENST00000557005 CSPG4P5Q96PW8 444 aa5.02□□□□□ -1.61
SYNE2-223ENST00000557005 PEBP4Q96S96 227 aa5.02□□□□□ -1.61
SYNE2-223ENST00000557005 APOL4Q9BPW4 351 aa5.02□□□□□ -1.61
SYNE2-223ENST00000557005 TRIM62Q9BVG3 475 aa5.02□□□□□ -1.61
SYNE2-223ENST00000557005 IDI2Q9BXS1 227 aa5.02□□□□□ -1.61
SYNE2-223ENST00000557005 WDR12Q9GZL7 423 aaKnown RBP5.02□□□□□ -1.61
SYNE2-223ENST00000557005 HDHD2Q9H0R4 259 aa5.02□□□□□ -1.61
SYNE2-223ENST00000557005 LHX5Q9H2C1 402 aa5.02□□□□□ -1.61
SYNE2-223ENST00000557005 POPDC2Q9HBU9 364 aa5.02□□□□□ -1.61
SYNE2-223ENST00000557005 CPA4Q9UI42 421 aa5.02□□□□□ -1.61
SYNE2-223ENST00000557005 TRHDEQ9UKU6 1024 aa5.02□□□□□ -1.61
SYNE2-223ENST00000557005 ASB3Q9Y575 518 aa5.02□□□□□ -1.61
SYNE2-223ENST00000557005 NUP98P52948 1817 aa5.02□□□□□ -1.61
SYNE2-223ENST00000557005 MYH1P12882 1939 aa5.01□□□□□ -1.61
SYNE2-223ENST00000557005 MOXD2PA6NHM9 499 aa5.01□□□□□ -1.61
SYNE2-223ENST00000557005 VPS26AO75436 327 aa5.01□□□□□ -1.61
SYNE2-223ENST00000557005 ATP5F1P24539 256 aaPredicted RBP5.01□□□□□ -1.61
SYNE2-223ENST00000557005 CAPGP40121 348 aa5.01□□□□□ -1.61
SYNE2-223ENST00000557005 SLC26A3P40879 764 aa5.01□□□□□ -1.61
SYNE2-223ENST00000557005 SEPHS1P49903 392 aa5.01□□□□□ -1.61
SYNE2-223ENST00000557005 ALDH6A1Q02252 535 aaKnown RBP5.01□□□□□ -1.61
SYNE2-223ENST00000557005 MAP3K10Q02779 954 aa5.01□□□□□ -1.61
SYNE2-223ENST00000557005 PRKCQQ04759 706 aa5.01□□□□□ -1.61
SYNE2-223ENST00000557005 KRR1Q13601 381 aaKnown RBP5.01□□□□□ -1.61
SYNE2-223ENST00000557005 GRIK4Q16099 956 aa5.01□□□□□ -1.61
SYNE2-223ENST00000557005 TEX44Q53QW1 395 aa5.01□□□□□ -1.61
SYNE2-223ENST00000557005 TMEM236Q5W0B7 351 aa5.01□□□□□ -1.61
SYNE2-223ENST00000557005 MRNIPQ6NTE8 343 aa5.01□□□□□ -1.61
SYNE2-223ENST00000557005 UGT3A1Q6NUS8 523 aa5.01□□□□□ -1.61
SYNE2-223ENST00000557005 DRICH1Q6PGQ1 229 aaPredicted RBP5.01□□□□□ -1.61
SYNE2-223ENST00000557005 ANKS1BQ7Z6G8 1248 aa5.01□□□□□ -1.61
SYNE2-223ENST00000557005 LUZP2Q86TE4 346 aa5.01□□□□□ -1.61
SYNE2-223ENST00000557005 ZDHHC14Q8IZN3 488 aa5.01□□□□□ -1.61
SYNE2-223ENST00000557005 DAW1Q8N136 415 aa5.01□□□□□ -1.61
SYNE2-223ENST00000557005 ZNF567Q8N184 647 aa5.01□□□□□ -1.61
SYNE2-223ENST00000557005 CARNMT1Q8N4J0 409 aa5.01□□□□□ -1.61
SYNE2-223ENST00000557005 OR56A4Q8NGH8 313 aa5.01□□□□□ -1.61
SYNE2-223ENST00000557005 LMO3Q8TAP4 145 aa5.01□□□□□ -1.61
SYNE2-223ENST00000557005 TWIST2Q8WVJ9 160 aa5.01□□□□□ -1.61
SYNE2-223ENST00000557005 S100ZQ8WXG8 99 aa5.01□□□□□ -1.61
SYNE2-223ENST00000557005 REXO5Q96IC2 774 aaKnown RBP5.01□□□□□ -1.61
SYNE2-223ENST00000557005 DMRTB1Q96MA1 342 aa5.01□□□□□ -1.61
SYNE2-223ENST00000557005 DPY30Q9C005 99 aa5.01□□□□□ -1.61
SYNE2-223ENST00000557005 C1orf21Q9H246 121 aa5.01□□□□□ -1.61
SYNE2-223ENST00000557005 FETUBQ9UGM5 382 aa5.01□□□□□ -1.61
SYNE2-223ENST00000557005 NUDT5Q9UKK9 219 aa5.01□□□□□ -1.61
SYNE2-223ENST00000557005 PCDHGC3Q9UN70 934 aa5.01□□□□□ -1.61
SYNE2-223ENST00000557005 FAM50BQ9Y247 325 aa5.01□□□□□ -1.61
SYNE2-223ENST00000557005 TPRKBQ9Y3C4 175 aa5.01□□□□□ -1.61
SYNE2-223ENST00000557005 PCDHB12Q9Y5F1 795 aa5.01□□□□□ -1.61
SYNE2-223ENST00000557005 NFASCO94856 1347 aa5.01□□□□□ -1.61
SYNE2-223ENST00000557005 C17orf102A2RUQ5 167 aa5.01□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms