RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-223ENST00000556689 PLCB1Q9NQ66 1216 aa12.84□□□□□ -0.35
SHMT2-223ENST00000556689 STARD5Q9NSY2 213 aa12.84□□□□□ -0.35
SHMT2-223ENST00000556689 ACSL6Q9UKU0 697 aa12.84□□□□□ -0.35
SHMT2-223ENST00000556689 HPCAL4Q9UM19 191 aa12.84□□□□□ -0.35
SHMT2-223ENST00000556689 TMEM110-MUSTN1A8MSY1 372 aa12.83□□□□□ -0.36
SHMT2-223ENST00000556689 GOLGA6L22H0YM25 854 aa12.83□□□□□ -0.36
SHMT2-223ENST00000556689 FOXN3O00409 490 aaPredicted RBP12.83□□□□□ -0.36
SHMT2-223ENST00000556689 BIN1O00499 593 aa12.83□□□□□ -0.36
SHMT2-223ENST00000556689 AREL1O15033 823 aa12.83□□□□□ -0.36
SHMT2-223ENST00000556689 NVLO15381 856 aaKnown RBP12.83□□□□□ -0.36
SHMT2-223ENST00000556689 MMP20O60882 483 aa12.83□□□□□ -0.36
SHMT2-223ENST00000556689 UGT2B4P06133 528 aa12.83□□□□□ -0.36
SHMT2-223ENST00000556689 ALPIP09923 528 aa12.83□□□□□ -0.36
SHMT2-223ENST00000556689 JMJD7P0C870 316 aa12.83□□□□□ -0.36
SHMT2-223ENST00000556689 PON1P27169 355 aa12.83□□□□□ -0.36
SHMT2-223ENST00000556689 IGFALSP35858 605 aa12.83□□□□□ -0.36
SHMT2-223ENST00000556689 SCNN1AP37088 669 aa12.83□□□□□ -0.36
SHMT2-223ENST00000556689 GABRB2P47870 512 aa12.83□□□□□ -0.36
SHMT2-223ENST00000556689 PEX5P50542 639 aa12.83□□□□□ -0.36
SHMT2-223ENST00000556689 BPIFB4P59827 614 aa12.83□□□□□ -0.36
SHMT2-223ENST00000556689 FAM102AQ5T9C2 384 aaPredicted RBP12.83□□□□□ -0.36
SHMT2-223ENST00000556689 SDR16C5Q8N3Y7 309 aa12.83□□□□□ -0.36
SHMT2-223ENST00000556689 OR6C4Q8NGE1 309 aa12.83□□□□□ -0.36
SHMT2-223ENST00000556689 OR2AP1Q8NGE2 309 aa12.83□□□□□ -0.36
SHMT2-223ENST00000556689 CXorf40AQ8TE69 158 aa12.83□□□□□ -0.36
SHMT2-223ENST00000556689 CCDC74AQ96AQ1 378 aa12.83□□□□□ -0.36
SHMT2-223ENST00000556689 TMEM74Q96NL1 305 aa12.83□□□□□ -0.36
SHMT2-223ENST00000556689 FOXP3Q9BZS1 431 aa12.83□□□□□ -0.36
SHMT2-223ENST00000556689 MBNL1Q9NR56 388 aaKnown RBP12.83□□□□□ -0.36
SHMT2-223ENST00000556689 SEPT10Q9P0V9 454 aa12.83□□□□□ -0.36
SHMT2-223ENST00000556689 SIRPGQ9P1W8 387 aa12.83□□□□□ -0.36
SHMT2-223ENST00000556689 RABGEF1Q9UJ41 708 aa12.83□□□□□ -0.36
SHMT2-223ENST00000556689 MYO18BQ8IUG5 2567 aa12.83□□□□□ -0.36
SHMT2-223ENST00000556689 GTPBP10A4D1E9 387 aaKnown RBP12.82□□□□□ -0.36
SHMT2-223ENST00000556689 SUV39H1O43463 412 aa12.82□□□□□ -0.36
SHMT2-223ENST00000556689 GSRP00390 522 aa12.82□□□□□ -0.36
SHMT2-223ENST00000556689 CELA2BP08218 269 aaPredicted RBP12.82□□□□□ -0.36
SHMT2-223ENST00000556689 LIPCP11150 499 aa12.82□□□□□ -0.36
SHMT2-223ENST00000556689 CCKBRP32239 447 aa12.82□□□□□ -0.36
SHMT2-223ENST00000556689 HK3P52790 923 aa12.82□□□□□ -0.36
SHMT2-223ENST00000556689 RAD51Q06609 339 aa12.82□□□□□ -0.36
SHMT2-223ENST00000556689 C1QBPQ07021 282 aaKnown RBP12.82□□□□□ -0.36
SHMT2-223ENST00000556689 KLHL40Q2TBA0 621 aa12.82□□□□□ -0.36
SHMT2-223ENST00000556689 ENPP7Q6UWV6 458 aa12.82□□□□□ -0.36
SHMT2-223ENST00000556689 GDPD4Q6W3E5 623 aa12.82□□□□□ -0.36
SHMT2-223ENST00000556689 FAM131BQ86XD5 332 aa12.82□□□□□ -0.36
SHMT2-223ENST00000556689 GKN2Q86XP6 184 aa12.82□□□□□ -0.36
SHMT2-223ENST00000556689 HID1Q8IV36 788 aa12.82□□□□□ -0.36
SHMT2-223ENST00000556689 ZSCAN1Q8NBB4 408 aa12.82□□□□□ -0.36
SHMT2-223ENST00000556689 TP53I13Q8NBR0 393 aaPredicted RBP12.82□□□□□ -0.36
SHMT2-223ENST00000556689 ARHGEF2Q92974 986 aaKnown RBP12.82□□□□□ -0.36
SHMT2-223ENST00000556689 TSACCQ96A04 125 aaPredicted RBP12.82□□□□□ -0.36
SHMT2-223ENST00000556689 EPAS1Q99814 870 aa12.82□□□□□ -0.36
SHMT2-223ENST00000556689 SEMA3CQ99985 751 aa12.82□□□□□ -0.36
SHMT2-223ENST00000556689 CPEB1Q9BZB8 566 aaKnown RBP12.82□□□□□ -0.36
SHMT2-223ENST00000556689 EDEM3Q9BZQ6 932 aa12.82□□□□□ -0.36
SHMT2-223ENST00000556689 LRRN3Q9H3W5 708 aa12.82□□□□□ -0.36
SHMT2-223ENST00000556689 RETREG1Q9H6L5 497 aa12.82□□□□□ -0.36
SHMT2-223ENST00000556689 OR12D3Q9UGF7 316 aa12.82□□□□□ -0.36
SHMT2-223ENST00000556689 DNAJC12Q9UKB3 198 aa12.82□□□□□ -0.36
SHMT2-223ENST00000556689 GPR34Q9UPC5 381 aa12.82□□□□□ -0.36
SHMT2-223ENST00000556689 BOD1L1Q8NFC6 3051 aa12.81□□□□□ -0.36
SHMT2-223ENST00000556689 A0A1W2PQM1 296 aa12.81□□□□□ -0.36
SHMT2-223ENST00000556689 D6RAR5 112 aa12.81□□□□□ -0.36
SHMT2-223ENST00000556689 TERTO14746 1132 aaKnown RBP12.81□□□□□ -0.36
SHMT2-223ENST00000556689 RASGRP1O95267 797 aa12.81□□□□□ -0.36
SHMT2-223ENST00000556689 RPLP0P05388 317 aaKnown RBP12.81□□□□□ -0.36
SHMT2-223ENST00000556689 FAM87AP0C7U9 286 aa12.81□□□□□ -0.36
SHMT2-223ENST00000556689 HGFP14210 728 aa12.81□□□□□ -0.36
SHMT2-223ENST00000556689 TIMP2P16035 220 aa12.81□□□□□ -0.36
SHMT2-223ENST00000556689 ITGB6P18564 788 aa12.81□□□□□ -0.36
SHMT2-223ENST00000556689 ITIH2P19823 946 aa12.81□□□□□ -0.36
SHMT2-223ENST00000556689 HTR1BP28222 390 aa12.81□□□□□ -0.36
SHMT2-223ENST00000556689 CDH5P33151 784 aaPredicted RBP12.81□□□□□ -0.36
SHMT2-223ENST00000556689 FLT3P36888 993 aa12.81□□□□□ -0.36
SHMT2-223ENST00000556689 NFKB2Q00653 900 aa12.81□□□□□ -0.36
SHMT2-223ENST00000556689 SRSF6Q13247 344 aaKnown RBP12.81□□□□□ -0.36
SHMT2-223ENST00000556689 MANEAQ5SRI9 462 aa12.81□□□□□ -0.36
SHMT2-223ENST00000556689 RWDD4Q6NW29 188 aaKnown RBP12.81□□□□□ -0.36
SHMT2-223ENST00000556689 RD3Q7Z3Z2 195 aa12.81□□□□□ -0.36
SHMT2-223ENST00000556689 BNIPLQ7Z465 357 aa12.81□□□□□ -0.36
SHMT2-223ENST00000556689 XYLT1Q86Y38 959 aa12.81□□□□□ -0.36
SHMT2-223ENST00000556689 KYQ8NBH2 561 aa12.81□□□□□ -0.36
SHMT2-223ENST00000556689 PCDH19Q8TAB3 1148 aa12.81□□□□□ -0.36
SHMT2-223ENST00000556689 VOPP1Q96AW1 172 aa12.81□□□□□ -0.36
SHMT2-223ENST00000556689 TMEM159Q96B96 161 aa12.81□□□□□ -0.36
SHMT2-223ENST00000556689 CFAP57Q96MR6 1250 aa12.81□□□□□ -0.36
SHMT2-223ENST00000556689 MAGEH1Q9H213 219 aa12.81□□□□□ -0.36
SHMT2-223ENST00000556689 NDFIP2Q9NV92 336 aa12.81□□□□□ -0.36
SHMT2-223ENST00000556689 PISDQ9UG56 409 aa12.81□□□□□ -0.36
SHMT2-223ENST00000556689 DNAI1Q9UI46 699 aa12.81□□□□□ -0.36
SHMT2-223ENST00000556689 TMEM59LQ9UK28 342 aa12.81□□□□□ -0.36
SHMT2-223ENST00000556689 AJAP1Q9UKB5 411 aaPredicted RBP12.81□□□□□ -0.36
SHMT2-223ENST00000556689 PCDHB11Q9Y5F2 797 aa12.81□□□□□ -0.36
SHMT2-223ENST00000556689 PIEZO2Q9H5I5 2752 aa12.81□□□□□ -0.36
SHMT2-223ENST00000556689 COL27A1Q8IZC6 1860 aaPredicted RBP12.8□□□□□ -0.36
SHMT2-223ENST00000556689 COL12A1Q99715 3063 aa12.8□□□□□ -0.36
SHMT2-223ENST00000556689 RP1P56715 2156 aa12.8□□□□□ -0.36
SHMT2-223ENST00000556689 GOLGA8SH3BPF8 625 aa12.8□□□□□ -0.36
SHMT2-223ENST00000556689 KDELR3O43731 214 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms