RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 UMODL1-AS1Q8N2C9 162 aa11.82□□□□□ -0.52
SHMT2-212ENST00000554467 MTBPQ96DY7 904 aa11.82□□□□□ -0.52
SHMT2-212ENST00000554467 PRR11Q96HE9 360 aaPredicted RBP11.82□□□□□ -0.52
SHMT2-212ENST00000554467 SLC22A12Q96S37 553 aa11.82□□□□□ -0.52
SHMT2-212ENST00000554467 SLC39A10Q9ULF5 831 aa11.82□□□□□ -0.52
SHMT2-212ENST00000554467 SOX13Q9UN79 622 aa11.82□□□□□ -0.52
SHMT2-212ENST00000554467 DOCK6Q96HP0 2047 aa11.82□□□□□ -0.52
SHMT2-212ENST00000554467 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP11.81□□□□□ -0.52
SHMT2-212ENST00000554467 FAM237BA0A1B0GVD1 139 aa11.81□□□□□ -0.52
SHMT2-212ENST00000554467 TRIM43BA6NCK2 446 aa11.81□□□□□ -0.52
SHMT2-212ENST00000554467 ERI2A8K979 691 aaKnown RBP11.81□□□□□ -0.52
SHMT2-212ENST00000554467 PHGDHO43175 533 aaKnown RBP11.81□□□□□ -0.52
SHMT2-212ENST00000554467 LYPLA1O75608 230 aaPredicted RBP11.81□□□□□ -0.52
SHMT2-212ENST00000554467 ANXA9O76027 345 aa11.81□□□□□ -0.52
SHMT2-212ENST00000554467 CNKSR3Q6P9H4 555 aa11.81□□□□□ -0.52
SHMT2-212ENST00000554467 RGS9BPQ6ZS82 235 aa11.81□□□□□ -0.52
SHMT2-212ENST00000554467 C10orf82Q8WW14 230 aa11.81□□□□□ -0.52
SHMT2-212ENST00000554467 TRIM43Q96BQ3 446 aaPredicted RBP11.81□□□□□ -0.52
SHMT2-212ENST00000554467 TUBGCP5Q96RT8 1024 aa11.81□□□□□ -0.52
SHMT2-212ENST00000554467 TLE6Q9H808 572 aa11.81□□□□□ -0.52
SHMT2-212ENST00000554467 OLA1Q9NTK5 396 aaKnown RBP11.81□□□□□ -0.52
SHMT2-212ENST00000554467 TMEM216Q9P0N5 145 aa11.81□□□□□ -0.52
SHMT2-212ENST00000554467 ARMCX1Q9P291 453 aa11.81□□□□□ -0.52
SHMT2-212ENST00000554467 DNMT3LQ9UJW3 386 aa11.81□□□□□ -0.52
SHMT2-212ENST00000554467 TANC1Q9C0D5 1861 aa11.81□□□□□ -0.52
SHMT2-212ENST00000554467 MAGEA13PA6NCF6 341 aa11.81□□□□□ -0.52
SHMT2-212ENST00000554467 AURKAO14965 403 aa11.81□□□□□ -0.52
SHMT2-212ENST00000554467 CLTBP09497 229 aa11.81□□□□□ -0.52
SHMT2-212ENST00000554467 ZDHHC11BP0C7U3 371 aa11.81□□□□□ -0.52
SHMT2-212ENST00000554467 NPY2RP49146 381 aa11.81□□□□□ -0.52
SHMT2-212ENST00000554467 TWF1Q12792 350 aa11.81□□□□□ -0.52
SHMT2-212ENST00000554467 MPP3Q13368 585 aa11.81□□□□□ -0.52
SHMT2-212ENST00000554467 PTPRCAPQ14761 206 aa11.81□□□□□ -0.52
SHMT2-212ENST00000554467 TIGD7Q6NT04 549 aaPredicted RBP11.81□□□□□ -0.52
SHMT2-212ENST00000554467 TOP1MTQ969P6 601 aa11.81□□□□□ -0.52
SHMT2-212ENST00000554467 RBBP8Q99708 897 aa11.81□□□□□ -0.52
SHMT2-212ENST00000554467 HEY2Q9UBP5 337 aa11.81□□□□□ -0.52
SHMT2-212ENST00000554467 ZNF212Q9UDV6 495 aa11.81□□□□□ -0.52
SHMT2-212ENST00000554467 TBC1D30Q9Y2I9 924 aa11.81□□□□□ -0.52
SHMT2-212ENST00000554467 YIPF1Q9Y548 306 aa11.81□□□□□ -0.52
SHMT2-212ENST00000554467 KCTD3Q9Y597 815 aa11.81□□□□□ -0.52
SHMT2-212ENST00000554467 F5H5T6 163 aa11.8□□□□□ -0.52
SHMT2-212ENST00000554467 TRAFD1O14545 582 aaPredicted RBP11.8□□□□□ -0.52
SHMT2-212ENST00000554467 HNRNPRO43390 633 aaKnown RBP11.8□□□□□ -0.52
SHMT2-212ENST00000554467 IGLV3-27P01718 113 aa11.8□□□□□ -0.52
SHMT2-212ENST00000554467 CRHR1P34998 444 aa11.8□□□□□ -0.52
SHMT2-212ENST00000554467 CCDC6Q16204 474 aa11.8□□□□□ -0.52
SHMT2-212ENST00000554467 CTC1Q2NKJ3 1217 aa11.8□□□□□ -0.52
SHMT2-212ENST00000554467 IL31Q6EBC2 164 aa11.8□□□□□ -0.52
SHMT2-212ENST00000554467 LDB1Q86U70 411 aaPredicted RBP11.8□□□□□ -0.52
SHMT2-212ENST00000554467 GRAMD1AQ96CP6 724 aa11.8□□□□□ -0.52
SHMT2-212ENST00000554467 SMIM14Q96QK8 99 aa11.8□□□□□ -0.52
SHMT2-212ENST00000554467 CPNE1Q99829 537 aa11.8□□□□□ -0.52
SHMT2-212ENST00000554467 YIPF2Q9BWQ6 316 aa11.8□□□□□ -0.52
SHMT2-212ENST00000554467 CADM1Q9BY67 442 aaKnown RBP11.8□□□□□ -0.52
SHMT2-212ENST00000554467 FAM192AQ9GZU8 254 aa11.8□□□□□ -0.52
SHMT2-212ENST00000554467 UXTQ9UBK9 157 aaPredicted RBP11.8□□□□□ -0.52
SHMT2-212ENST00000554467 IGLV3-10A0A075B6K4 115 aa11.8□□□□□ -0.52
SHMT2-212ENST00000554467 DCTN3O75935 186 aa11.8□□□□□ -0.52
SHMT2-212ENST00000554467 LYNP07948 512 aa11.8□□□□□ -0.52
SHMT2-212ENST00000554467 GABRB3P28472 473 aa11.8□□□□□ -0.52
SHMT2-212ENST00000554467 CORO1AP31146 461 aaKnown RBP11.8□□□□□ -0.52
SHMT2-212ENST00000554467 ADRA1AP35348 466 aa11.8□□□□□ -0.52
SHMT2-212ENST00000554467 GEMP55040 296 aa11.8□□□□□ -0.52
SHMT2-212ENST00000554467 GRM3Q14832 879 aa11.8□□□□□ -0.52
SHMT2-212ENST00000554467 FASTKD1Q53R41 847 aaKnown RBP11.8□□□□□ -0.52
SHMT2-212ENST00000554467 HECTD3Q5T447 861 aa11.8□□□□□ -0.52
SHMT2-212ENST00000554467 LRRC74BQ6ZQY2 392 aa11.8□□□□□ -0.52
SHMT2-212ENST00000554467 LINC00523Q86TU6 105 aa11.8□□□□□ -0.52
SHMT2-212ENST00000554467 PPP1R14CQ8TAE6 165 aa11.8□□□□□ -0.52
SHMT2-212ENST00000554467 ZNF461Q8TAF7 563 aa11.8□□□□□ -0.52
SHMT2-212ENST00000554467 DTX3LQ8TDB6 740 aa11.8□□□□□ -0.52
SHMT2-212ENST00000554467 WDR60Q8WVS4 1066 aa11.8□□□□□ -0.52
SHMT2-212ENST00000554467 E2F7Q96AV8 911 aa11.8□□□□□ -0.52
SHMT2-212ENST00000554467 ZNF558Q96NG5 402 aa11.8□□□□□ -0.52
SHMT2-212ENST00000554467 RHBDL2Q9NX52 303 aa11.8□□□□□ -0.52
SHMT2-212ENST00000554467 ZBBXA8MT70 800 aa11.8□□□□□ -0.52
SHMT2-212ENST00000554467 CACNG3O60359 315 aa11.8□□□□□ -0.52
SHMT2-212ENST00000554467 SLC4A1P02730 911 aa11.8□□□□□ -0.52
SHMT2-212ENST00000554467 SOD2P04179 222 aa11.8□□□□□ -0.52
SHMT2-212ENST00000554467 MMP2P08253 660 aa11.8□□□□□ -0.52
SHMT2-212ENST00000554467 ARNTP27540 789 aa11.8□□□□□ -0.52
SHMT2-212ENST00000554467 ALDH1A3P47895 512 aa11.8□□□□□ -0.52
SHMT2-212ENST00000554467 GLRBP48167 497 aa11.8□□□□□ -0.52
SHMT2-212ENST00000554467 TUFMP49411 452 aaKnown RBP11.8□□□□□ -0.52
SHMT2-212ENST00000554467 HARS2P49590 506 aaKnown RBP11.8□□□□□ -0.52
SHMT2-212ENST00000554467 RENBPP51606 427 aa11.8□□□□□ -0.52
SHMT2-212ENST00000554467 NDST2P52849 883 aa11.8□□□□□ -0.52
SHMT2-212ENST00000554467 PKN3Q6P5Z2 889 aa11.8□□□□□ -0.52
SHMT2-212ENST00000554467 CYS1Q717R9 158 aa11.8□□□□□ -0.52
SHMT2-212ENST00000554467 LCA5Q86VQ0 697 aa11.8□□□□□ -0.52
SHMT2-212ENST00000554467 MCUR1Q96AQ8 359 aa11.8□□□□□ -0.52
SHMT2-212ENST00000554467 PRICKLE1Q96MT3 831 aaPredicted RBP11.8□□□□□ -0.52
SHMT2-212ENST00000554467 GBP5Q96PP8 586 aa11.8□□□□□ -0.52
SHMT2-212ENST00000554467 SEMA3CQ99985 751 aa11.8□□□□□ -0.52
SHMT2-212ENST00000554467 ITM2AO43736 263 aa11.79□□□□□ -0.52
SHMT2-212ENST00000554467 ACSL4O60488 711 aa11.79□□□□□ -0.52
SHMT2-212ENST00000554467 GSRP00390 522 aa11.79□□□□□ -0.52
SHMT2-212ENST00000554467 SERPINB3P29508 390 aa11.79□□□□□ -0.52
SHMT2-212ENST00000554467 NRG1Q02297 640 aaPredicted RBP11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms