RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 ADORA2BP29275 332 aa7.77□□□□□ -1.17
LIMA1-216ENST00000552909 CCR3P51677 355 aa7.77□□□□□ -1.17
LIMA1-216ENST00000552909 IFRD2Q12894 506 aaPredicted RBP7.77□□□□□ -1.17
LIMA1-216ENST00000552909 APOFQ13790 326 aa7.77□□□□□ -1.17
LIMA1-216ENST00000552909 KLHL38Q2WGJ6 581 aa7.77□□□□□ -1.17
LIMA1-216ENST00000552909 GPR158Q5T848 1215 aa7.77□□□□□ -1.17
LIMA1-216ENST00000552909 PPP1R26Q5T8A7 1209 aaPredicted RBP7.77□□□□□ -1.17
LIMA1-216ENST00000552909 OGFRL1Q5TC84 451 aaPredicted RBP7.77□□□□□ -1.17
LIMA1-216ENST00000552909 DHRS4L2Q6PKH6 230 aa7.77□□□□□ -1.17
LIMA1-216ENST00000552909 ADGRD1Q6QNK2 874 aa7.77□□□□□ -1.17
LIMA1-216ENST00000552909 DENND5BQ6ZUT9 1274 aa7.77□□□□□ -1.17
LIMA1-216ENST00000552909 ARID3BQ8IVW6 561 aaPredicted RBP7.77□□□□□ -1.17
LIMA1-216ENST00000552909 ALLCQ8N6M5 410 aa7.77□□□□□ -1.17
LIMA1-216ENST00000552909 MYRFLQ96LU7 910 aa7.77□□□□□ -1.17
LIMA1-216ENST00000552909 SLC22A12Q96S37 553 aa7.77□□□□□ -1.17
LIMA1-216ENST00000552909 CYP2S1Q96SQ9 504 aa7.77□□□□□ -1.17
LIMA1-216ENST00000552909 KLF6Q99612 283 aaPredicted RBP7.77□□□□□ -1.17
LIMA1-216ENST00000552909 SMOQ99835 787 aa7.77□□□□□ -1.17
LIMA1-216ENST00000552909 FAM118BQ9BPY3 351 aa7.77□□□□□ -1.17
LIMA1-216ENST00000552909 LRFN3Q9BTN0 628 aa7.77□□□□□ -1.17
LIMA1-216ENST00000552909 CCDC106Q9BWC9 280 aa7.77□□□□□ -1.17
LIMA1-216ENST00000552909 HEMGNQ9BXL5 484 aa7.77□□□□□ -1.17
LIMA1-216ENST00000552909 STRIP2Q9ULQ0 834 aa7.77□□□□□ -1.17
LIMA1-216ENST00000552909 RAB26Q9ULW5 256 aa7.77□□□□□ -1.17
LIMA1-216ENST00000552909 DUSP12Q9UNI6 340 aa7.77□□□□□ -1.17
LIMA1-216ENST00000552909 MAD1L1Q9Y6D9 718 aa7.77□□□□□ -1.17
LIMA1-216ENST00000552909 CEPT1Q9Y6K0 416 aa7.77□□□□□ -1.17
LIMA1-216ENST00000552909 ZNF318Q5VUA4 2279 aa7.77□□□□□ -1.17
LIMA1-216ENST00000552909 C2orf78A6NCI8 922 aa7.76□□□□□ -1.17
LIMA1-216ENST00000552909 TNFRSF10BO14763 440 aa7.76□□□□□ -1.17
LIMA1-216ENST00000552909 KLF11O14901 512 aa7.76□□□□□ -1.17
LIMA1-216ENST00000552909 DNAJA2O60884 412 aa7.76□□□□□ -1.17
LIMA1-216ENST00000552909 PRAMEF12O95522 483 aa7.76□□□□□ -1.17
LIMA1-216ENST00000552909 ZBED1O96006 694 aa7.76□□□□□ -1.17
LIMA1-216ENST00000552909 MT-ND3P03897 115 aa7.76□□□□□ -1.17
LIMA1-216ENST00000552909 RALAP11233 206 aa7.76□□□□□ -1.17
LIMA1-216ENST00000552909 COL6A2P12110 1019 aa7.76□□□□□ -1.17
LIMA1-216ENST00000552909 CPOXP36551 454 aa7.76□□□□□ -1.17
LIMA1-216ENST00000552909 PGFP49763 221 aa7.76□□□□□ -1.17
LIMA1-216ENST00000552909 EPHB1P54762 984 aa7.76□□□□□ -1.17
LIMA1-216ENST00000552909 ALDH18A1P54886 795 aaKnown RBP7.76□□□□□ -1.17
LIMA1-216ENST00000552909 MAP3K7CLP57077 242 aa7.76□□□□□ -1.17
LIMA1-216ENST00000552909 SIGLEC14Q08ET2 396 aa7.76□□□□□ -1.17
LIMA1-216ENST00000552909 KLF1Q13351 362 aaPredicted RBP7.76□□□□□ -1.17
LIMA1-216ENST00000552909 C16orf72Q14CZ0 275 aa7.76□□□□□ -1.17
LIMA1-216ENST00000552909 MORF4L2Q15014 288 aa7.76□□□□□ -1.17
LIMA1-216ENST00000552909 EFTUD2Q15029 972 aaKnown RBP eCLIP7.76□□□□□ -1.17
LIMA1-216ENST00000552909 CNGA3Q16281 694 aa7.76□□□□□ -1.17
LIMA1-216ENST00000552909 C2CD6Q53TS8 623 aa7.76□□□□□ -1.17
LIMA1-216ENST00000552909 RABGAP1LQ5R372 815 aa7.76□□□□□ -1.17
LIMA1-216ENST00000552909 SYCP2LQ5T4T6 812 aa7.76□□□□□ -1.17
LIMA1-216ENST00000552909 VITQ6UXI7 678 aa7.76□□□□□ -1.17
LIMA1-216ENST00000552909 ISLR2Q6UXK2 745 aa7.76□□□□□ -1.17
LIMA1-216ENST00000552909 TMEM110Q86TL2 294 aa7.76□□□□□ -1.17
LIMA1-216ENST00000552909 RIN3Q8TB24 985 aa7.76□□□□□ -1.17
LIMA1-216ENST00000552909 MZB1Q8WU39 189 aa7.76□□□□□ -1.17
LIMA1-216ENST00000552909 SMARCD2Q92925 531 aa7.76□□□□□ -1.17
LIMA1-216ENST00000552909 DCUN1D1Q96GG9 259 aa7.76□□□□□ -1.17
LIMA1-216ENST00000552909 APOPT1Q96IL0 206 aa7.76□□□□□ -1.17
LIMA1-216ENST00000552909 COX4I2Q96KJ9 171 aa7.76□□□□□ -1.17
LIMA1-216ENST00000552909 SPATA17Q96L03 361 aa7.76□□□□□ -1.17
LIMA1-216ENST00000552909 C8orf48Q96LL4 319 aa7.76□□□□□ -1.17
LIMA1-216ENST00000552909 CNBD2Q96M20 576 aa7.76□□□□□ -1.17
LIMA1-216ENST00000552909 FAM111AQ96PZ2 611 aa7.76□□□□□ -1.17
LIMA1-216ENST00000552909 PAFAH2Q99487 392 aa7.76□□□□□ -1.17
LIMA1-216ENST00000552909 PRPF18Q99633 342 aaKnown RBP7.76□□□□□ -1.17
LIMA1-216ENST00000552909 RRN3Q9NYV6 651 aa7.76□□□□□ -1.17
LIMA1-216ENST00000552909 RABGEF1Q9UJ41 708 aa7.76□□□□□ -1.17
LIMA1-216ENST00000552909 ANAPC7Q9UJX3 599 aa7.76□□□□□ -1.17
LIMA1-216ENST00000552909 APPL1Q9UKG1 709 aa7.76□□□□□ -1.17
LIMA1-216ENST00000552909 PADI4Q9UM07 663 aa7.76□□□□□ -1.17
LIMA1-216ENST00000552909 CCL26Q9Y258 94 aa7.76□□□□□ -1.17
LIMA1-216ENST00000552909 HEY1Q9Y5J3 304 aa7.76□□□□□ -1.17
LIMA1-216ENST00000552909 KRBA1A5PL33 1030 aa7.76□□□□□ -1.17
LIMA1-216ENST00000552909 PRR5-ARHGAP8B1AHC4 643 aa7.76□□□□□ -1.17
LIMA1-216ENST00000552909 E5RJQ4 531 aa7.76□□□□□ -1.17
LIMA1-216ENST00000552909 M0R296 226 aa7.76□□□□□ -1.17
LIMA1-216ENST00000552909 MED7O43513 233 aa7.76□□□□□ -1.17
LIMA1-216ENST00000552909 CRTAMO95727 393 aa7.76□□□□□ -1.17
LIMA1-216ENST00000552909 SERPINA6P08185 405 aa7.76□□□□□ -1.17
LIMA1-216ENST00000552909 FAM58BPP0C7Q3 252 aa7.76□□□□□ -1.17
LIMA1-216ENST00000552909 NSFP46459 744 aaKnown RBP7.76□□□□□ -1.17
LIMA1-216ENST00000552909 CDK9P50750 372 aaKnown RBP7.76□□□□□ -1.17
LIMA1-216ENST00000552909 HDAC4P56524 1084 aa7.76□□□□□ -1.17
LIMA1-216ENST00000552909 ARHGAP8P85298 464 aa7.76□□□□□ -1.17
LIMA1-216ENST00000552909 SLC25A3Q00325 362 aa7.76□□□□□ -1.17
LIMA1-216ENST00000552909 MYBPC1Q00872 1141 aa7.76□□□□□ -1.17
LIMA1-216ENST00000552909 TAF10Q12962 218 aa7.76□□□□□ -1.17
LIMA1-216ENST00000552909 PDAP1Q13442 181 aaKnown RBP7.76□□□□□ -1.17
LIMA1-216ENST00000552909 TMEM31Q5JXX7 168 aa7.76□□□□□ -1.17
LIMA1-216ENST00000552909 DENND1BQ6P3S1 775 aa7.76□□□□□ -1.17
LIMA1-216ENST00000552909 IYDQ6PHW0 289 aa7.76□□□□□ -1.17
LIMA1-216ENST00000552909 TRIM72Q6ZMU5 477 aa7.76□□□□□ -1.17
LIMA1-216ENST00000552909 CLEC20AQ6ZU45 233 aa7.76□□□□□ -1.17
LIMA1-216ENST00000552909 MTSS1LQ765P7 747 aa7.76□□□□□ -1.17
LIMA1-216ENST00000552909 GPRIN1Q7Z2K8 1008 aa7.76□□□□□ -1.17
LIMA1-216ENST00000552909 ANKMY2Q8IV38 441 aa7.76□□□□□ -1.17
LIMA1-216ENST00000552909 UBALD2Q8IYN6 164 aa7.76□□□□□ -1.17
LIMA1-216ENST00000552909 MCOLN2Q8IZK6 566 aa7.76□□□□□ -1.17
LIMA1-216ENST00000552909 TTC39CQ8N584 583 aa7.76□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms