RNA–Protein interactions for RNA: ENST00000543658.5

DDB1-223, Transcript of damage specific DNA binding protein 1, human

TSL 4

Gene DDB1, Length 571 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDB1-223	ENST00000543658	SHISA7	A6NL88	538 aa		12.01	□□□□□ -0.49
DDB1-223	ENST00000543658	AP3B1	O00203	1094 aa		12.01	□□□□□ -0.49
DDB1-223	ENST00000543658	KPNA3	O00505	521 aa	Predicted RBP	12.01	□□□□□ -0.49
DDB1-223	ENST00000543658	ZNF821	O75541	412 aa	Predicted RBP	12.01	□□□□□ -0.49
DDB1-223	ENST00000543658	LEFTY1	O75610	366 aa		12.01	□□□□□ -0.49
DDB1-223	ENST00000543658	ALDH1A2	O94788	518 aa		12.01	□□□□□ -0.49
DDB1-223	ENST00000543658	SEC31A	O94979	1220 aa	Known RBP	12.01	□□□□□ -0.49
DDB1-223	ENST00000543658	AP2A1	O95782	977 aa		12.01	□□□□□ -0.49
DDB1-223	ENST00000543658	ADH1B	P00325	375 aa		12.01	□□□□□ -0.49
DDB1-223	ENST00000543658	CP	P00450	1065 aa		12.01	□□□□□ -0.49
DDB1-223	ENST00000543658	DNTT	P04053	509 aa		12.01	□□□□□ -0.49
DDB1-223	ENST00000543658	ACADM	P11310	421 aa		12.01	□□□□□ -0.49
DDB1-223	ENST00000543658	ITIH2	P19823	946 aa		12.01	□□□□□ -0.49
DDB1-223	ENST00000543658	TPSB2	P20231	275 aa		12.01	□□□□□ -0.49
DDB1-223	ENST00000543658	MCM3	P25205	808 aa		12.01	□□□□□ -0.49
DDB1-223	ENST00000543658	PSMD8	P48556	350 aa		12.01	□□□□□ -0.49
DDB1-223	ENST00000543658	ITGA8	P53708	1063 aa		12.01	□□□□□ -0.49
DDB1-223	ENST00000543658	WNT3A	P56704	352 aa		12.01	□□□□□ -0.49
DDB1-223	ENST00000543658	CDK16	Q00536	496 aa		12.01	□□□□□ -0.49
DDB1-223	ENST00000543658	CCDC15	Q0P6D6	951 aa		12.01	□□□□□ -0.49
DDB1-223	ENST00000543658	SFSWAP	Q12872	951 aa	Known RBP	12.01	□□□□□ -0.49
DDB1-223	ENST00000543658	CAMK2G	Q13555	558 aa	Predicted RBP	12.01	□□□□□ -0.49
DDB1-223	ENST00000543658	MORF4L2	Q15014	288 aa		12.01	□□□□□ -0.49
DDB1-223	ENST00000543658	TPSAB1	Q15661	275 aa		12.01	□□□□□ -0.49
DDB1-223	ENST00000543658	KCTD19	Q17RG1	926 aa	Predicted RBP	12.01	□□□□□ -0.49
DDB1-223	ENST00000543658	TTC31	Q49AM3	519 aa	Predicted RBP	12.01	□□□□□ -0.49
DDB1-223	ENST00000543658	ARSI	Q5FYB1	569 aa		12.01	□□□□□ -0.49
DDB1-223	ENST00000543658	SYCP2L	Q5T4T6	812 aa		12.01	□□□□□ -0.49
DDB1-223	ENST00000543658	C9orf64	Q5T6V5	341 aa		12.01	□□□□□ -0.49
DDB1-223	ENST00000543658		Q6ZS52	159 aa		12.01	□□□□□ -0.49
DDB1-223	ENST00000543658	TRIM67	Q6ZTA4	783 aa		12.01	□□□□□ -0.49
DDB1-223	ENST00000543658	KDELC2	Q7Z4H8	507 aa		12.01	□□□□□ -0.49
DDB1-223	ENST00000543658	HOOK3	Q86VS8	718 aa		12.01	□□□□□ -0.49
DDB1-223	ENST00000543658	DNAAF3	Q8N9W5	541 aa		12.01	□□□□□ -0.49
DDB1-223	ENST00000543658	CHST14	Q8NCH0	376 aa		12.01	□□□□□ -0.49
DDB1-223	ENST00000543658	LPCAT1	Q8NF37	534 aa		12.01	□□□□□ -0.49
DDB1-223	ENST00000543658	PIP4K2C	Q8TBX8	421 aa		12.01	□□□□□ -0.49
DDB1-223	ENST00000543658	RUBCN	Q92622	972 aa		12.01	□□□□□ -0.49
DDB1-223	ENST00000543658	RMDN1	Q96DB5	314 aa		12.01	□□□□□ -0.49
DDB1-223	ENST00000543658	FEM1C	Q96JP0	617 aa		12.01	□□□□□ -0.49
DDB1-223	ENST00000543658	ZNF641	Q96N77	438 aa	Predicted RBP	12.01	□□□□□ -0.49
DDB1-223	ENST00000543658	IER2	Q9BTL4	223 aa		12.01	□□□□□ -0.49
DDB1-223	ENST00000543658	TDRD1	Q9BXT4	1180 aa	Known RBP	12.01	□□□□□ -0.49
DDB1-223	ENST00000543658	BCCIP	Q9P287	314 aa	Known RBP eCLIP	12.01	□□□□□ -0.49
DDB1-223	ENST00000543658	MTRF1L	Q9UGC7	380 aa	Known RBP	12.01	□□□□□ -0.49
DDB1-223	ENST00000543658	ANAPC5	Q9UJX4	755 aa		12.01	□□□□□ -0.49
DDB1-223	ENST00000543658	HCN2	Q9UL51	889 aa		12.01	□□□□□ -0.49
DDB1-223	ENST00000543658	MTF2	Q9Y483	593 aa	Predicted RBP	12.01	□□□□□ -0.49
DDB1-223	ENST00000543658	ARIH1	Q9Y4X5	557 aa	Predicted RBP	12.01	□□□□□ -0.49
DDB1-223	ENST00000543658	RAI2	Q9Y5P3	530 aa		12.01	□□□□□ -0.49
DDB1-223	ENST00000543658	TCRBV21S2A2	A0A5A6	115 aa		12	□□□□□ -0.49
DDB1-223	ENST00000543658	ANTXRL	A6NF34	631 aa		12	□□□□□ -0.49
DDB1-223	ENST00000543658	CHURC1-FNTB	B4DL54	471 aa		12	□□□□□ -0.49
DDB1-223	ENST00000543658	GJB3	O75712	270 aa		12	□□□□□ -0.49
DDB1-223	ENST00000543658	MMP2	P08253	660 aa		12	□□□□□ -0.49
DDB1-223	ENST00000543658	HLA-DPA1	P20036	260 aa		12	□□□□□ -0.49
DDB1-223	ENST00000543658	GK	P32189	559 aa		12	□□□□□ -0.49
DDB1-223	ENST00000543658	RPL21	P46778	160 aa	Known RBP	12	□□□□□ -0.49
DDB1-223	ENST00000543658	RPS9	P46781	194 aa	Known RBP	12	□□□□□ -0.49
DDB1-223	ENST00000543658	POLR2L	P62875	67 aa	Known RBP	12	□□□□□ -0.49
DDB1-223	ENST00000543658	CDK18	Q07002	472 aa		12	□□□□□ -0.49
DDB1-223	ENST00000543658	TRAF2	Q12933	501 aa		12	□□□□□ -0.49
DDB1-223	ENST00000543658	CUL1	Q13616	776 aa		12	□□□□□ -0.49
DDB1-223	ENST00000543658	KCNJ11	Q14654	390 aa		12	□□□□□ -0.49
DDB1-223	ENST00000543658	RNASEH2B	Q5TBB1	312 aa	Known RBP	12	□□□□□ -0.49
DDB1-223	ENST00000543658	DUPD1	Q68J44	220 aa		12	□□□□□ -0.49
DDB1-223	ENST00000543658	BRAT1	Q6PJG6	821 aa		12	□□□□□ -0.49
DDB1-223	ENST00000543658	PRPF39	Q86UA1	669 aa	Known RBP	12	□□□□□ -0.49
DDB1-223	ENST00000543658	CACUL1	Q86Y37	369 aa		12	□□□□□ -0.49
DDB1-223	ENST00000543658	CAMK1D	Q8IU85	385 aa		12	□□□□□ -0.49
DDB1-223	ENST00000543658	MMAA	Q8IVH4	418 aa	Known RBP	12	□□□□□ -0.49
DDB1-223	ENST00000543658	PGBD3	Q8N328	593 aa		12	□□□□□ -0.49
DDB1-223	ENST00000543658	TMIE	Q8NEW7	156 aa		12	□□□□□ -0.49
DDB1-223	ENST00000543658	GANC	Q8TET4	914 aa		12	□□□□□ -0.49
DDB1-223	ENST00000543658	IFT81	Q8WYA0	676 aa		12	□□□□□ -0.49
DDB1-223	ENST00000543658	CPT1B	Q92523	772 aa		12	□□□□□ -0.49
DDB1-223	ENST00000543658	PRCC	Q92733	491 aa	Predicted RBP	12	□□□□□ -0.49
DDB1-223	ENST00000543658	OXNAD1	Q96HP4	312 aa	Predicted RBP	12	□□□□□ -0.49
DDB1-223	ENST00000543658	KLHL32	Q96NJ5	620 aa		12	□□□□□ -0.49
DDB1-223	ENST00000543658	MLPH	Q9BV36	600 aa	Predicted RBP	12	□□□□□ -0.49
DDB1-223	ENST00000543658	FRMD8	Q9BZ67	464 aa	Predicted RBP	12	□□□□□ -0.49
DDB1-223	ENST00000543658	FAM129A	Q9BZQ8	928 aa		12	□□□□□ -0.49
DDB1-223	ENST00000543658	CHRD	Q9H2X0	955 aa		12	□□□□□ -0.49
DDB1-223	ENST00000543658	SUV39H2	Q9H5I1	410 aa		12	□□□□□ -0.49
DDB1-223	ENST00000543658	NOL12	Q9UGY1	213 aa	Known RBP eCLIP	12	□□□□□ -0.49
DDB1-223	ENST00000543658	SHOC2	Q9UQ13	582 aa		12	□□□□□ -0.49
DDB1-223	ENST00000543658	CHKB	Q9Y259	395 aa		12	□□□□□ -0.49
DDB1-223	ENST00000543658	PCDHB9	Q9Y5E1	797 aa		12	□□□□□ -0.49
DDB1-223	ENST00000543658	PCDHGC4	Q9Y5F7	938 aa		12	□□□□□ -0.49
DDB1-223	ENST00000543658	WASF2	Q9Y6W5	498 aa		12	□□□□□ -0.49
DDB1-223	ENST00000543658		V9GYY5	206 aa	Predicted RBP	12	□□□□□ -0.49
DDB1-223	ENST00000543658	ESYT3	A0FGR9	886 aa		11.99	□□□□□ -0.49
DDB1-223	ENST00000543658	TMEM221	A6NGB7	291 aa		11.99	□□□□□ -0.49
DDB1-223	ENST00000543658	GOLGA8M	H3BSY2	632 aa		11.99	□□□□□ -0.49
DDB1-223	ENST00000543658		M0R296	226 aa		11.99	□□□□□ -0.49
DDB1-223	ENST00000543658	ADAM23	O75077	832 aa		11.99	□□□□□ -0.49
DDB1-223	ENST00000543658	NDST3	O95803	873 aa		11.99	□□□□□ -0.49
DDB1-223	ENST00000543658	FGF1	P05230	155 aa		11.99	□□□□□ -0.49
DDB1-223	ENST00000543658	DCN	P07585	359 aa	Known RBP	11.99	□□□□□ -0.49
DDB1-223	ENST00000543658	DGKE	P52429	567 aa		11.99	□□□□□ -0.49

Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms