RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 FAM167BQ9BTA0 163 aa16.47■□□□□ 0.23
COL4A1-204ENST00000543140 COG4Q9H9E3 785 aa16.47■□□□□ 0.23
COL4A1-204ENST00000543140 XPR1Q9UBH6 696 aa16.47■□□□□ 0.23
COL4A1-204ENST00000543140 TAGLN3Q9UI15 199 aa16.47■□□□□ 0.23
COL4A1-204ENST00000543140 ZFP37Q9Y6Q3 630 aaPredicted RBP16.47■□□□□ 0.23
COL4A1-204ENST00000543140 OR51F1A6NGY5 319 aa16.47■□□□□ 0.23
COL4A1-204ENST00000543140 SIN3BO75182 1162 aa16.47■□□□□ 0.23
COL4A1-204ENST00000543140 SEC24AO95486 1093 aa16.47■□□□□ 0.23
COL4A1-204ENST00000543140 PIRTP0C851 137 aa16.47■□□□□ 0.23
COL4A1-204ENST00000543140 GRIA4P48058 902 aa16.47■□□□□ 0.23
COL4A1-204ENST00000543140 ARSDP51689 593 aa16.47■□□□□ 0.23
COL4A1-204ENST00000543140 NAGLUP54802 743 aa16.47■□□□□ 0.23
COL4A1-204ENST00000543140 ZNF235Q14590 738 aa16.47■□□□□ 0.23
COL4A1-204ENST00000543140 PTPRCAPQ14761 206 aa16.47■□□□□ 0.23
COL4A1-204ENST00000543140 USP41Q3LFD5 358 aa16.47■□□□□ 0.23
COL4A1-204ENST00000543140 LRRC8EQ6NSJ5 796 aa16.47■□□□□ 0.23
COL4A1-204ENST00000543140 TMCO2Q7Z6W1 182 aaPredicted RBP16.47■□□□□ 0.23
COL4A1-204ENST00000543140 POU5F2Q8N7G0 328 aa16.47■□□□□ 0.23
COL4A1-204ENST00000543140 C2orf15Q8WU43 125 aaKnown RBP16.47■□□□□ 0.23
COL4A1-204ENST00000543140 FATE1Q969F0 183 aa16.47■□□□□ 0.23
COL4A1-204ENST00000543140 SPON2Q9BUD6 331 aa16.47■□□□□ 0.23
COL4A1-204ENST00000543140 GKN1Q9NS71 199 aa16.47■□□□□ 0.23
COL4A1-204ENST00000543140 SEC23IPQ9Y6Y8 1000 aaKnown RBP16.47■□□□□ 0.23
COL4A1-204ENST00000543140 PRAMEF11O60813 436 aa16.46■□□□□ 0.23
COL4A1-204ENST00000543140 WFS1O76024 890 aa16.46■□□□□ 0.23
COL4A1-204ENST00000543140 NCF2P19878 526 aaPredicted RBP16.46■□□□□ 0.23
COL4A1-204ENST00000543140 PGM1P36871 562 aa16.46■□□□□ 0.23
COL4A1-204ENST00000543140 SLC12A2P55011 1212 aa16.46■□□□□ 0.23
COL4A1-204ENST00000543140 GALNT3Q14435 633 aa16.46■□□□□ 0.23
COL4A1-204ENST00000543140 RABGAP1LQ5R372 815 aa16.46■□□□□ 0.23
COL4A1-204ENST00000543140 WLSQ5T9L3 541 aa16.46■□□□□ 0.23
COL4A1-204ENST00000543140 IL31Q6EBC2 164 aa16.46■□□□□ 0.23
COL4A1-204ENST00000543140 SLC8B1Q6J4K2 584 aa16.46■□□□□ 0.23
COL4A1-204ENST00000543140 RNF135Q8IUD6 432 aa16.46■□□□□ 0.23
COL4A1-204ENST00000543140 TDRD5Q8NAT2 981 aaKnown RBP16.46■□□□□ 0.23
COL4A1-204ENST00000543140 MAPK15Q8TD08 544 aa16.46■□□□□ 0.23
COL4A1-204ENST00000543140 KCNV2Q8TDN2 545 aa16.46■□□□□ 0.23
COL4A1-204ENST00000543140 HDAC10Q969S8 669 aa16.46■□□□□ 0.23
COL4A1-204ENST00000543140 CDH19Q9H159 772 aa16.46■□□□□ 0.23
COL4A1-204ENST00000543140 SUDS3Q9H7L9 328 aaPredicted RBP16.46■□□□□ 0.23
COL4A1-204ENST00000543140 MEI4A8MW99 385 aa16.46■□□□□ 0.22
COL4A1-204ENST00000543140 ACSL4O60488 711 aa16.46■□□□□ 0.22
COL4A1-204ENST00000543140 APOA4P06727 396 aa16.46■□□□□ 0.22
COL4A1-204ENST00000543140 ATXN1LP0C7T5 689 aaKnown RBP16.46■□□□□ 0.22
COL4A1-204ENST00000543140 GLDCP23378 1020 aa16.46■□□□□ 0.22
COL4A1-204ENST00000543140 MPSTP25325 297 aa16.46■□□□□ 0.22
COL4A1-204ENST00000543140 MAPKAPK2P49137 400 aa16.46■□□□□ 0.22
COL4A1-204ENST00000543140 KPNA1P52294 538 aaPredicted RBP16.46■□□□□ 0.22
COL4A1-204ENST00000543140 YBEYP58557 167 aaPredicted RBP16.46■□□□□ 0.22
COL4A1-204ENST00000543140 MXRA7P84157 204 aa16.46■□□□□ 0.22
COL4A1-204ENST00000543140 FAM117BQ6P1L5 589 aa16.46■□□□□ 0.22
COL4A1-204ENST00000543140 BLOC1S5Q8TDH9 187 aa16.46■□□□□ 0.22
COL4A1-204ENST00000543140 STYXQ8WUJ0 223 aa16.46■□□□□ 0.22
COL4A1-204ENST00000543140 IFT43Q96FT9 208 aa16.46■□□□□ 0.22
COL4A1-204ENST00000543140 GPR78Q96P69 363 aa16.46■□□□□ 0.22
COL4A1-204ENST00000543140 TTLL2Q9BWV7 592 aa16.46■□□□□ 0.22
COL4A1-204ENST00000543140 POLR1EQ9GZS1 481 aaKnown RBP16.46■□□□□ 0.22
COL4A1-204ENST00000543140 DNAJC28Q9NX36 388 aa16.46■□□□□ 0.22
COL4A1-204ENST00000543140 PCDH10Q9P2E7 1040 aa16.46■□□□□ 0.22
COL4A1-204ENST00000543140 MTRRQ9UBK8 725 aa16.46■□□□□ 0.22
COL4A1-204ENST00000543140 ZNF840PA6NDX5 716 aa16.45■□□□□ 0.22
COL4A1-204ENST00000543140 TMEM114B3SHH9 223 aa16.45■□□□□ 0.22
COL4A1-204ENST00000543140 SPECC1L-ADORA2AF8WAN1 911 aa16.45■□□□□ 0.22
COL4A1-204ENST00000543140 SCAMP3O14828 347 aaKnown RBP16.45■□□□□ 0.22
COL4A1-204ENST00000543140 COCHO43405 550 aa16.45■□□□□ 0.22
COL4A1-204ENST00000543140 IRF1P10914 325 aa16.45■□□□□ 0.22
COL4A1-204ENST00000543140 ARHGEF6Q15052 776 aa16.45■□□□□ 0.22
COL4A1-204ENST00000543140 KHDC1Q4VXA5 237 aaKnown RBP16.45■□□□□ 0.22
COL4A1-204ENST00000543140 SLC9B1Q4ZJI4 515 aa16.45■□□□□ 0.22
COL4A1-204ENST00000543140 TMCO4Q5TGY1 634 aa16.45■□□□□ 0.22
COL4A1-204ENST00000543140 LIPMQ5VYY2 423 aa16.45■□□□□ 0.22
COL4A1-204ENST00000543140 HEXDCQ8WVB3 486 aa16.45■□□□□ 0.22
COL4A1-204ENST00000543140 OLFM1Q99784 485 aa16.45■□□□□ 0.22
COL4A1-204ENST00000543140 RNPEPL1Q9HAU8 725 aa16.45■□□□□ 0.22
COL4A1-204ENST00000543140 COMMD8Q9NX08 183 aa16.45■□□□□ 0.22
COL4A1-204ENST00000543140 MICAL3Q7RTP6 2002 aa16.45■□□□□ 0.22
COL4A1-204ENST00000543140 DLX3O60479 287 aa16.45■□□□□ 0.22
COL4A1-204ENST00000543140 KLHL2O95198 593 aa16.45■□□□□ 0.22
COL4A1-204ENST00000543140 KLKB1P03952 638 aa16.45■□□□□ 0.22
COL4A1-204ENST00000543140 ALOX15P16050 662 aaPredicted RBP16.45■□□□□ 0.22
COL4A1-204ENST00000543140 CRABP2P29373 138 aa16.45■□□□□ 0.22
COL4A1-204ENST00000543140 MAP2K2P36507 400 aa16.45■□□□□ 0.22
COL4A1-204ENST00000543140 TUFMP49411 452 aaKnown RBP16.45■□□□□ 0.22
COL4A1-204ENST00000543140 SGSHP51688 502 aa16.45■□□□□ 0.22
COL4A1-204ENST00000543140 PRAMEP78395 509 aa16.45■□□□□ 0.22
COL4A1-204ENST00000543140 CSHL1Q14406 222 aa16.45■□□□□ 0.22
COL4A1-204ENST00000543140 KPNB1Q14974 876 aaKnown RBP16.45■□□□□ 0.22
COL4A1-204ENST00000543140 ARL13AQ5H913 290 aaPredicted RBP16.45■□□□□ 0.22
COL4A1-204ENST00000543140 WASHC2DQ5SRD0 308 aa16.45■□□□□ 0.22
COL4A1-204ENST00000543140 SPOUT1Q5T280 376 aaKnown RBP16.45■□□□□ 0.22
COL4A1-204ENST00000543140 TMPRSS6Q8IU80 811 aa16.45■□□□□ 0.22
COL4A1-204ENST00000543140 CCNYL1Q8N7R7 359 aa16.45■□□□□ 0.22
COL4A1-204ENST00000543140 WDR60Q8WVS4 1066 aa16.45■□□□□ 0.22
COL4A1-204ENST00000543140 CLPTM1LQ96KA5 538 aa16.45■□□□□ 0.22
COL4A1-204ENST00000543140 EXOC2Q96KP1 924 aa16.45■□□□□ 0.22
COL4A1-204ENST00000543140 CLSTN3Q9BQT9 956 aa16.45■□□□□ 0.22
COL4A1-204ENST00000543140 ILKAPQ9H0C8 392 aaPredicted RBP16.45■□□□□ 0.22
COL4A1-204ENST00000543140 RNF208Q9H0X6 261 aa16.45■□□□□ 0.22
COL4A1-204ENST00000543140 STN1Q9H668 368 aaKnown RBP16.45■□□□□ 0.22
COL4A1-204ENST00000543140 NOP53Q9NZM5 478 aaKnown RBP16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 82 ms