RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 SPENQ96T58 3664 aaKnown RBP8.53□□□□□ -1.04
CHD4-208ENST00000540960 C5orf60A6NFR6 353 aa8.53□□□□□ -1.04
CHD4-208ENST00000540960 ERI2A8K979 691 aaKnown RBP8.53□□□□□ -1.04
CHD4-208ENST00000540960 CBX4O00257 560 aa8.53□□□□□ -1.04
CHD4-208ENST00000540960 EEF2KO00418 725 aaKnown RBP8.53□□□□□ -1.04
CHD4-208ENST00000540960 PIK3R2O00459 728 aa8.53□□□□□ -1.04
CHD4-208ENST00000540960 CLDN5O00501 218 aa8.53□□□□□ -1.04
CHD4-208ENST00000540960 RASGRF2O14827 1237 aa8.53□□□□□ -1.04
CHD4-208ENST00000540960 ALOX15BO15296 676 aa8.53□□□□□ -1.04
CHD4-208ENST00000540960 POLR3GO15318 223 aaPredicted RBP8.53□□□□□ -1.04
CHD4-208ENST00000540960 RGS16O15492 202 aaPredicted RBP8.53□□□□□ -1.04
CHD4-208ENST00000540960 FLRT2O43155 660 aa8.53□□□□□ -1.04
CHD4-208ENST00000540960 ALDH1A2O94788 518 aa8.53□□□□□ -1.04
CHD4-208ENST00000540960 ITGB2P05107 769 aa8.53□□□□□ -1.04
CHD4-208ENST00000540960 USP17L7P0C7H9 530 aa8.53□□□□□ -1.04
CHD4-208ENST00000540960 ZNF883P0CG24 379 aa8.53□□□□□ -1.04
CHD4-208ENST00000540960 IVDP26440 423 aa8.53□□□□□ -1.04
CHD4-208ENST00000540960 TPI1P60174 286 aa8.53□□□□□ -1.04
CHD4-208ENST00000540960 YWHAGP61981 247 aaKnown RBP eCLIP8.53□□□□□ -1.043e-6■■□□□ 12.2
CHD4-208ENST00000540960 DYNLT1P63172 113 aa8.53□□□□□ -1.04
CHD4-208ENST00000540960 MRPS25P82663 173 aaKnown RBP8.53□□□□□ -1.04
CHD4-208ENST00000540960 NRG1Q02297 640 aaPredicted RBP8.53□□□□□ -1.04
CHD4-208ENST00000540960 MESP2Q0VG99 397 aa8.53□□□□□ -1.04
CHD4-208ENST00000540960 PLD1Q13393 1074 aa8.53□□□□□ -1.04
CHD4-208ENST00000540960 PAFAH1B3Q15102 231 aaKnown RBP8.53□□□□□ -1.04
CHD4-208ENST00000540960 TAF5Q15542 800 aa8.53□□□□□ -1.04
CHD4-208ENST00000540960 HIF1AQ16665 826 aa8.53□□□□□ -1.04
CHD4-208ENST00000540960 KRT71Q3SY84 523 aa8.53□□□□□ -1.04
CHD4-208ENST00000540960 BROXQ5VW32 411 aa8.53□□□□□ -1.04
CHD4-208ENST00000540960 ITPRIPL1Q6GPH6 555 aa8.53□□□□□ -1.04
CHD4-208ENST00000540960 RHBDF2Q6PJF5 856 aa8.53□□□□□ -1.04
CHD4-208ENST00000540960 LRRC31Q6UY01 552 aa8.53□□□□□ -1.04
CHD4-208ENST00000540960 LEKR1Q6ZMV7 388 aa8.53□□□□□ -1.04
CHD4-208ENST00000540960 ANKS1BQ7Z6G8 1248 aa8.53□□□□□ -1.04
CHD4-208ENST00000540960 CPNE8Q86YQ8 564 aa8.53□□□□□ -1.04
CHD4-208ENST00000540960 GSPT2Q8IYD1 628 aaKnown RBP8.53□□□□□ -1.04
CHD4-208ENST00000540960 FAM26EQ8N5C1 309 aa8.53□□□□□ -1.04
CHD4-208ENST00000540960 ZNF248Q8NDW4 579 aa8.53□□□□□ -1.04
CHD4-208ENST00000540960 MCUQ8NE86 351 aa8.53□□□□□ -1.04
CHD4-208ENST00000540960 C1orf74Q96LT6 269 aa8.53□□□□□ -1.04
CHD4-208ENST00000540960 GDAP1L1Q96MZ0 367 aa8.53□□□□□ -1.04
CHD4-208ENST00000540960 CSPG4P5Q96PW8 444 aa8.53□□□□□ -1.04
CHD4-208ENST00000540960 RBM15Q96T37 977 aaKnown RBP eCLIP8.53□□□□□ -1.049e-7■■■■□ 22.2
CHD4-208ENST00000540960 NAT9Q9BTE0 207 aa8.53□□□□□ -1.04
CHD4-208ENST00000540960 TMBIM4Q9HC24 238 aa8.53□□□□□ -1.04
CHD4-208ENST00000540960 XAB2Q9HCS7 855 aaKnown RBP8.53□□□□□ -1.04
CHD4-208ENST00000540960 CD93Q9NPY3 652 aa8.53□□□□□ -1.04
CHD4-208ENST00000540960 TLR8Q9NR97 1041 aaKnown RBP8.53□□□□□ -1.04
CHD4-208ENST00000540960 KLHL11Q9NVR0 708 aa8.53□□□□□ -1.04
CHD4-208ENST00000540960 SENP1Q9P0U3 644 aa8.53□□□□□ -1.04
CHD4-208ENST00000540960 YIPF1Q9Y548 306 aa8.53□□□□□ -1.04
CHD4-208ENST00000540960 MED13Q9UHV7 2174 aa8.52□□□□□ -1.04
CHD4-208ENST00000540960 IGHV1OR15-9A0A0B4J2B8 117 aa8.52□□□□□ -1.05
CHD4-208ENST00000540960 TCRBV21S2A2A0A5A6 115 aa8.52□□□□□ -1.05
CHD4-208ENST00000540960 YJEFN3A6XGL0 299 aa8.52□□□□□ -1.05
CHD4-208ENST00000540960 HHLA1C9JL84 531 aa8.52□□□□□ -1.05
CHD4-208ENST00000540960 E7ENQ6 273 aa8.52□□□□□ -1.05
CHD4-208ENST00000540960 E7EVH7 732 aa8.52□□□□□ -1.05
CHD4-208ENST00000540960 KLK10O43240 276 aa8.52□□□□□ -1.05
CHD4-208ENST00000540960 RIPK2O43353 540 aa8.52□□□□□ -1.05
CHD4-208ENST00000540960 ADAM23O75077 832 aa8.52□□□□□ -1.05
CHD4-208ENST00000540960 CDH16O75309 829 aa8.52□□□□□ -1.05
CHD4-208ENST00000540960 GABBR2O75899 941 aa8.52□□□□□ -1.05
CHD4-208ENST00000540960 KLF8O95600 359 aaPredicted RBP8.52□□□□□ -1.05
CHD4-208ENST00000540960 SYF2O95926 243 aaKnown RBP8.52□□□□□ -1.05
CHD4-208ENST00000540960 APOEP02649 317 aa8.52□□□□□ -1.05
CHD4-208ENST00000540960 CPB1P15086 417 aa8.52□□□□□ -1.05
CHD4-208ENST00000540960 TCF4P15884 667 aa8.52□□□□□ -1.05
CHD4-208ENST00000540960 YWHAQP27348 245 aa8.52□□□□□ -1.05
CHD4-208ENST00000540960 GABRR2P28476 465 aa8.52□□□□□ -1.05
CHD4-208ENST00000540960 MAGEA4P43358 317 aa8.52□□□□□ -1.05
CHD4-208ENST00000540960 MAGEA6P43360 314 aa8.52□□□□□ -1.05
CHD4-208ENST00000540960 UCNP55089 124 aa8.52□□□□□ -1.05
CHD4-208ENST00000540960 ILF2Q12905 390 aaKnown RBP8.52□□□□□ -1.05
CHD4-208ENST00000540960 NME3Q13232 169 aa8.52□□□□□ -1.05
CHD4-208ENST00000540960 PRPSAP1Q14558 356 aa8.52□□□□□ -1.05
CHD4-208ENST00000540960 TERF2Q15554 542 aa8.52□□□□□ -1.05
CHD4-208ENST00000540960 KLHL38Q2WGJ6 581 aa8.52□□□□□ -1.05
CHD4-208ENST00000540960 SLC39A12Q504Y0 691 aa8.52□□□□□ -1.05
CHD4-208ENST00000540960 RNASEH2BQ5TBB1 312 aaKnown RBP8.52□□□□□ -1.05
CHD4-208ENST00000540960 LGSNQ5TDP6 509 aa8.52□□□□□ -1.05
CHD4-208ENST00000540960 ZNF787Q6DD87 383 aa8.52□□□□□ -1.05
CHD4-208ENST00000540960 TXNRD3NBQ6F5E7 133 aa8.52□□□□□ -1.05
CHD4-208ENST00000540960 MSANTD2Q6P1R3 559 aa8.52□□□□□ -1.05
CHD4-208ENST00000540960 ARHGEF18Q6ZSZ5 1173 aa8.52□□□□□ -1.05
CHD4-208ENST00000540960 RFX8Q6ZV50 586 aa8.52□□□□□ -1.05
CHD4-208ENST00000540960 CCDC25Q86WR0 208 aa8.52□□□□□ -1.05
CHD4-208ENST00000540960 FAM131BQ86XD5 332 aa8.52□□□□□ -1.05
CHD4-208ENST00000540960 SCN4BQ8IWT1 228 aa8.52□□□□□ -1.05
CHD4-208ENST00000540960 IL17RCQ8NAC3 791 aa8.52□□□□□ -1.05
CHD4-208ENST00000540960 ATP11CQ8NB49 1132 aa8.52□□□□□ -1.05
CHD4-208ENST00000540960 TSEN2Q8NCE0 465 aaKnown RBP8.52□□□□□ -1.05
CHD4-208ENST00000540960 STKLD1Q8NE28 680 aa8.52□□□□□ -1.05
CHD4-208ENST00000540960 OR10T2Q8NGX3 314 aa8.52□□□□□ -1.05
CHD4-208ENST00000540960 PCDH19Q8TAB3 1148 aa8.52□□□□□ -1.05
CHD4-208ENST00000540960 USP13Q92995 863 aaPredicted RBP8.52□□□□□ -1.05
CHD4-208ENST00000540960 HIC2Q96JB3 615 aa8.52□□□□□ -1.05
CHD4-208ENST00000540960 QKIQ96PU8 341 aaKnown RBP eCLIP8.52□□□□□ -1.05
CHD4-208ENST00000540960 PEBP4Q96S96 227 aa8.52□□□□□ -1.05
CHD4-208ENST00000540960 TMEM121Q9BTD3 319 aa8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms