RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 SLC35G2Q8TBE7 412 aa14.37□□□□□ -0.11
USP28-209ENST00000540925 ASB12Q8WXK4 309 aa14.37□□□□□ -0.11
USP28-209ENST00000540925 SPOCK2Q92563 424 aa14.37□□□□□ -0.11
USP28-209ENST00000540925 NSMCE3Q96MG7 304 aa14.37□□□□□ -0.11
USP28-209ENST00000540925 ELF4Q99607 663 aaPredicted RBP14.37□□□□□ -0.11
USP28-209ENST00000540925 KLF6Q99612 283 aaPredicted RBP14.37□□□□□ -0.11
USP28-209ENST00000540925 GGT7Q9UJ14 662 aa14.37□□□□□ -0.11
USP28-209ENST00000540925 ITM2BQ9Y287 266 aa14.37□□□□□ -0.11
USP28-209ENST00000540925 CA5BQ9Y2D0 317 aa14.37□□□□□ -0.11
USP28-209ENST00000540925 AKAP13Q12802 2813 aa14.36□□□□□ -0.11
USP28-209ENST00000540925 FREM2Q5SZK8 3169 aa14.36□□□□□ -0.11
USP28-209ENST00000540925 SPAARA0A1B0GVQ0 90 aa14.36□□□□□ -0.11
USP28-209ENST00000540925 DFFAO00273 331 aa14.36□□□□□ -0.11
USP28-209ENST00000540925 FLRT2O43155 660 aa14.36□□□□□ -0.11
USP28-209ENST00000540925 PALMO75781 387 aa14.36□□□□□ -0.11
USP28-209ENST00000540925 DKK1O94907 266 aa14.36□□□□□ -0.11
USP28-209ENST00000540925 PCDH8O95206 1070 aa14.36□□□□□ -0.11
USP28-209ENST00000540925 PIGNO95427 931 aa14.36□□□□□ -0.11
USP28-209ENST00000540925 HNRNPA2B1P22626 353 aaKnown RBP14.36□□□□□ -0.11
USP28-209ENST00000540925 ARHGAP25P42331 645 aa14.36□□□□□ -0.11
USP28-209ENST00000540925 CDH6P55285 790 aa14.36□□□□□ -0.11
USP28-209ENST00000540925 RAD51Q06609 339 aa14.36□□□□□ -0.11
USP28-209ENST00000540925 SLC10A7Q0GE19 358 aa14.36□□□□□ -0.11
USP28-209ENST00000540925 GRM3Q14832 879 aa14.36□□□□□ -0.11
USP28-209ENST00000540925 HADHQ16836 314 aaKnown RBP14.36□□□□□ -0.11
USP28-209ENST00000540925 GCNT7Q6ZNI0 430 aa14.36□□□□□ -0.11
USP28-209ENST00000540925 ZSWIM9Q86XI8 627 aa14.36□□□□□ -0.11
USP28-209ENST00000540925 RHOT2Q8IXI1 618 aa14.36□□□□□ -0.11
USP28-209ENST00000540925 PCDH19Q8TAB3 1148 aa14.36□□□□□ -0.11
USP28-209ENST00000540925 SAP25Q8TEE9 199 aa14.36□□□□□ -0.11
USP28-209ENST00000540925 RFFLQ8WZ73 363 aa14.36□□□□□ -0.11
USP28-209ENST00000540925 KLK6Q92876 244 aa14.36□□□□□ -0.11
USP28-209ENST00000540925 SKA1Q96BD8 255 aa14.36□□□□□ -0.11
USP28-209ENST00000540925 ECHDC3Q96DC8 303 aa14.36□□□□□ -0.11
USP28-209ENST00000540925 FEM1CQ96JP0 617 aa14.36□□□□□ -0.11
USP28-209ENST00000540925 ZNF641Q96N77 438 aaPredicted RBP14.36□□□□□ -0.11
USP28-209ENST00000540925 LENG8Q96PV6 779 aaPredicted RBP14.36□□□□□ -0.11
USP28-209ENST00000540925 TUBGCP5Q96RT8 1024 aa14.36□□□□□ -0.11
USP28-209ENST00000540925 ZNF670Q9BS34 389 aa14.36□□□□□ -0.11
USP28-209ENST00000540925 SLC17A9Q9BYT1 436 aa14.36□□□□□ -0.11
USP28-209ENST00000540925 FZD3Q9NPG1 666 aa14.36□□□□□ -0.11
USP28-209ENST00000540925 GDF3Q9NR23 364 aa14.36□□□□□ -0.11
USP28-209ENST00000540925 BTBD3Q9Y2F9 522 aa14.36□□□□□ -0.11
USP28-209ENST00000540925 HS3ST3A1Q9Y663 406 aa14.36□□□□□ -0.11
USP28-209ENST00000540925 C3orf70A6NLC5 250 aaPredicted RBP14.35□□□□□ -0.11
USP28-209ENST00000540925 TRAFD1O14545 582 aaPredicted RBP14.35□□□□□ -0.11
USP28-209ENST00000540925 RAD51BO15315 384 aa14.35□□□□□ -0.11
USP28-209ENST00000540925 SLC31A1O15431 190 aa14.35□□□□□ -0.11
USP28-209ENST00000540925 CR2P20023 1033 aa14.35□□□□□ -0.11
USP28-209ENST00000540925 SERPINB6P35237 376 aa14.35□□□□□ -0.11
USP28-209ENST00000540925 SUOXP51687 545 aa14.35□□□□□ -0.11
USP28-209ENST00000540925 HADHBP55084 474 aaKnown RBP14.35□□□□□ -0.11
USP28-209ENST00000540925 STAT4Q14765 748 aa14.35□□□□□ -0.11
USP28-209ENST00000540925 PAFAH1B3Q15102 231 aaKnown RBP14.35□□□□□ -0.11
USP28-209ENST00000540925 PDK2Q15119 407 aa14.35□□□□□ -0.11
USP28-209ENST00000540925 TRIP6Q15654 476 aaKnown RBP14.35□□□□□ -0.11
USP28-209ENST00000540925 SLC45A4Q5BKX6 768 aa14.35□□□□□ -0.11
USP28-209ENST00000540925 PRAMEF14Q5SWL7 426 aa14.35□□□□□ -0.11
USP28-209ENST00000540925 TMCO4Q5TGY1 634 aa14.35□□□□□ -0.11
USP28-209ENST00000540925 NCBP2-AS2Q69YL0 99 aa14.35□□□□□ -0.11
USP28-209ENST00000540925 SRLQ86TD4 932 aa14.35□□□□□ -0.11
USP28-209ENST00000540925 LRRC49Q8IUZ0 686 aa14.35□□□□□ -0.11
USP28-209ENST00000540925 SLC22A18ASQ8N1D0 253 aa14.35□□□□□ -0.11
USP28-209ENST00000540925 PGBD5Q8N414 524 aa14.35□□□□□ -0.11
USP28-209ENST00000540925 PQLC3Q8N755 202 aa14.35□□□□□ -0.11
USP28-209ENST00000540925 BMFQ96LC9 184 aa14.35□□□□□ -0.11
USP28-209ENST00000540925 SUV39H2Q9H5I1 410 aa14.35□□□□□ -0.11
USP28-209ENST00000540925 SP110Q9HB58 689 aa14.35□□□□□ -0.11
USP28-209ENST00000540925 TOR4AQ9NXH8 423 aa14.35□□□□□ -0.11
USP28-209ENST00000540925 COL5A1P20908 1838 aaPredicted RBP14.35□□□□□ -0.11
USP28-209ENST00000540925 IGLON5A6NGN9 336 aa14.34□□□□□ -0.11
USP28-209ENST00000540925 ZNF487B1APH4 448 aa14.34□□□□□ -0.11
USP28-209ENST00000540925 YKT6O15498 198 aa14.34□□□□□ -0.11
USP28-209ENST00000540925 MFSD11O43934 449 aa14.34□□□□□ -0.11
USP28-209ENST00000540925 MAGEC1O60732 1142 aa14.34□□□□□ -0.11
USP28-209ENST00000540925 KRT7P08729 469 aa14.34□□□□□ -0.11
USP28-209ENST00000540925 ITIH2P19823 946 aa14.34□□□□□ -0.11
USP28-209ENST00000540925 KCNA4P22459 653 aa14.34□□□□□ -0.11
USP28-209ENST00000540925 EPHA8P29322 1005 aaPredicted RBP14.34□□□□□ -0.11
USP28-209ENST00000540925 AKT2P31751 481 aa14.34□□□□□ -0.11
USP28-209ENST00000540925 GRK6P43250 576 aa14.34□□□□□ -0.11
USP28-209ENST00000540925 SIM1P81133 766 aaPredicted RBP14.34□□□□□ -0.11
USP28-209ENST00000540925 GALNT2Q10471 571 aa14.34□□□□□ -0.11
USP28-209ENST00000540925 KRT81Q14533 505 aa14.34□□□□□ -0.11
USP28-209ENST00000540925 LBRQ14739 615 aaKnown RBP14.34□□□□□ -0.11
USP28-209ENST00000540925 UGP2Q16851 508 aa14.34□□□□□ -0.11
USP28-209ENST00000540925 TMEM52BQ4KMG9 183 aa14.34□□□□□ -0.11
USP28-209ENST00000540925 ANKRD20A8PQ5CZ79 823 aa14.34□□□□□ -0.11
USP28-209ENST00000540925 LRRC73Q5JTD7 316 aa14.34□□□□□ -0.11
USP28-209ENST00000540925 LRRC38Q5VT99 294 aa14.34□□□□□ -0.11
USP28-209ENST00000540925 BRAT1Q6PJG6 821 aa14.34□□□□□ -0.11
USP28-209ENST00000540925 TTC7BQ86TV6 843 aa14.34□□□□□ -0.11
USP28-209ENST00000540925 VSIG1Q86XK7 387 aa14.34□□□□□ -0.11
USP28-209ENST00000540925 CAMK1DQ8IU85 385 aa14.34□□□□□ -0.11
USP28-209ENST00000540925 OXR1Q8N573 874 aa14.34□□□□□ -0.11
USP28-209ENST00000540925 TEX26Q8N6G2 289 aa14.34□□□□□ -0.11
USP28-209ENST00000540925 OR13H1Q8NG92 308 aa14.34□□□□□ -0.11
USP28-209ENST00000540925 FAM174AQ8TBP5 190 aa14.34□□□□□ -0.11
USP28-209ENST00000540925 RAPGEF5Q92565 580 aa14.34□□□□□ -0.11
USP28-209ENST00000540925 FATE1Q969F0 183 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms