RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 LIMCH1Q9UPQ0 1083 aa9.3□□□□□ -0.92
USP28-205ENST00000537706 HS3ST2Q9Y278 367 aa9.3□□□□□ -0.92
USP28-205ENST00000537706 MRPS18BQ9Y676 258 aaKnown RBP9.3□□□□□ -0.92
USP28-205ENST00000537706 PIPSLA2A3N6 862 aa9.29□□□□□ -0.92
USP28-205ENST00000537706 B4GAT1O43505 415 aa9.29□□□□□ -0.92
USP28-205ENST00000537706 TM7SF2O76062 418 aa9.29□□□□□ -0.92
USP28-205ENST00000537706 GPR3P46089 330 aa9.29□□□□□ -0.92
USP28-205ENST00000537706 CLDN10P78369 228 aa9.29□□□□□ -0.92
USP28-205ENST00000537706 TESK1Q15569 626 aa9.29□□□□□ -0.92
USP28-205ENST00000537706 CHRNA6Q15825 494 aa9.29□□□□□ -0.92
USP28-205ENST00000537706 SPECC1LQ69YQ0 1117 aa9.29□□□□□ -0.92
USP28-205ENST00000537706 C12orf56Q8IXR9 622 aa9.29□□□□□ -0.92
USP28-205ENST00000537706 ZNF507Q8TCN5 953 aa9.29□□□□□ -0.92
USP28-205ENST00000537706 TATDN2Q93075 761 aa9.29□□□□□ -0.92
USP28-205ENST00000537706 PNPLA2Q96AD5 504 aa9.29□□□□□ -0.92
USP28-205ENST00000537706 RBM15Q96T37 977 aaKnown RBP eCLIP9.29□□□□□ -0.92
USP28-205ENST00000537706 HEPHQ9BQS7 1158 aa9.29□□□□□ -0.92
USP28-205ENST00000537706 FEM1AQ9BSK4 669 aa9.29□□□□□ -0.92
USP28-205ENST00000537706 TRIM62Q9BVG3 475 aa9.29□□□□□ -0.92
USP28-205ENST00000537706 OCIAD1Q9NX40 245 aa9.29□□□□□ -0.92
USP28-205ENST00000537706 RCOR3Q9P2K3 495 aaPredicted RBP9.29□□□□□ -0.92
USP28-205ENST00000537706 NYNRINQ9P2P1 1898 aaKnown RBP9.29□□□□□ -0.92
USP28-205ENST00000537706 SDK2Q58EX2 2172 aa9.29□□□□□ -0.92
USP28-205ENST00000537706 FBN3Q75N90 2809 aa9.29□□□□□ -0.92
USP28-205ENST00000537706 SETSIPP0DME0 302 aa9.29□□□□□ -0.92
USP28-205ENST00000537706 THRAP10827 490 aa9.29□□□□□ -0.92
USP28-205ENST00000537706 STAT6P42226 847 aa9.29□□□□□ -0.92
USP28-205ENST00000537706 MC2RQ01718 297 aa9.29□□□□□ -0.92
USP28-205ENST00000537706 CDK18Q07002 472 aa9.29□□□□□ -0.92
USP28-205ENST00000537706 PEX6Q13608 980 aa9.29□□□□□ -0.92
USP28-205ENST00000537706 NFATC4Q14934 902 aa9.29□□□□□ -0.92
USP28-205ENST00000537706 NELFCDQ8IXH7 590 aa9.29□□□□□ -0.92
USP28-205ENST00000537706 CHST14Q8NCH0 376 aa9.29□□□□□ -0.92
USP28-205ENST00000537706 WDR92Q96MX6 357 aa9.29□□□□□ -0.92
USP28-205ENST00000537706 CHST11Q9NPF2 352 aa9.29□□□□□ -0.92
USP28-205ENST00000537706 COPG2Q9UBF2 871 aa9.29□□□□□ -0.92
USP28-205ENST00000537706 CROTQ9UKG9 612 aa9.29□□□□□ -0.92
USP28-205ENST00000537706 PNMA8BQ9ULN7 279 aaPredicted RBP9.29□□□□□ -0.92
USP28-205ENST00000537706 H3BQV1 296 aa9.28□□□□□ -0.92
USP28-205ENST00000537706 TGFB1I1O43294 461 aa9.28□□□□□ -0.92
USP28-205ENST00000537706 PPP6R2O75170 966 aa9.28□□□□□ -0.92
USP28-205ENST00000537706 FBXO21O94952 628 aa9.28□□□□□ -0.92
USP28-205ENST00000537706 CASP14P31944 242 aa9.28□□□□□ -0.92
USP28-205ENST00000537706 C22orf39Q6P5X5 142 aa9.28□□□□□ -0.92
USP28-205ENST00000537706 C6orf15Q6UXA7 325 aaPredicted RBP9.28□□□□□ -0.92
USP28-205ENST00000537706 CDH24Q86UP0 819 aa9.28□□□□□ -0.92
USP28-205ENST00000537706 THAP4Q8WY91 577 aa9.28□□□□□ -0.92
USP28-205ENST00000537706 AHCYL2Q96HN2 611 aaKnown RBP9.28□□□□□ -0.92
USP28-205ENST00000537706 ZSCAN31Q96LW9 406 aaPredicted RBP9.28□□□□□ -0.92
USP28-205ENST00000537706 RPRD1AQ96P16 312 aaPredicted RBP9.28□□□□□ -0.92
USP28-205ENST00000537706 CTRCQ99895 268 aa9.28□□□□□ -0.92
USP28-205ENST00000537706 SPRY4Q9C004 299 aa9.28□□□□□ -0.92
USP28-205ENST00000537706 FBXO8Q9NRD0 319 aa9.28□□□□□ -0.92
USP28-205ENST00000537706 LUZP4Q9P127 313 aa9.28□□□□□ -0.92
USP28-205ENST00000537706 PCSK5Q92824 1860 aa9.27□□□□□ -0.92
USP28-205ENST00000537706 IKBKBO14920 756 aa9.27□□□□□ -0.93
USP28-205ENST00000537706 SART1O43290 800 aaKnown RBP9.27□□□□□ -0.93
USP28-205ENST00000537706 CREG1O75629 220 aa9.27□□□□□ -0.93
USP28-205ENST00000537706 DNAJB5O75953 348 aa9.27□□□□□ -0.93
USP28-205ENST00000537706 DLGAP3O95886 979 aa9.27□□□□□ -0.93
USP28-205ENST00000537706 SLC2A3P11169 496 aa9.27□□□□□ -0.93
USP28-205ENST00000537706 BPIP17213 487 aa9.27□□□□□ -0.93
USP28-205ENST00000537706 KELP23276 732 aa9.27□□□□□ -0.93
USP28-205ENST00000537706 NFKBIAP25963 317 aa9.27□□□□□ -0.93
USP28-205ENST00000537706 SSTR2P30874 369 aa9.27□□□□□ -0.93
USP28-205ENST00000537706 DNA2P51530 1060 aa9.27□□□□□ -0.93
USP28-205ENST00000537706 CCL11P51671 97 aa9.27□□□□□ -0.93
USP28-205ENST00000537706 ITGA1P56199 1179 aa9.27□□□□□ -0.93
USP28-205ENST00000537706 MTA1Q13330 715 aa9.27□□□□□ -0.93
USP28-205ENST00000537706 TSR1Q2NL82 804 aaKnown RBP9.27□□□□□ -0.93
USP28-205ENST00000537706 SMTNL2Q2TAL5 461 aa9.27□□□□□ -0.93
USP28-205ENST00000537706 CXorf57Q6NSI4 855 aaKnown RBP9.27□□□□□ -0.93
USP28-205ENST00000537706 TMEM71Q6P5X7 295 aa9.27□□□□□ -0.93
USP28-205ENST00000537706 DPY19L3Q6ZPD9 716 aa9.27□□□□□ -0.93
USP28-205ENST00000537706 PARS2Q7L3T8 475 aaKnown RBP9.27□□□□□ -0.93
USP28-205ENST00000537706 TAOK1Q7L7X3 1001 aa9.27□□□□□ -0.93
USP28-205ENST00000537706 SLC47A2Q86VL8 602 aa9.27□□□□□ -0.93
USP28-205ENST00000537706 CIR1Q86X95 450 aaPredicted RBP9.27□□□□□ -0.93
USP28-205ENST00000537706 TMC2Q8TDI7 906 aa9.27□□□□□ -0.93
USP28-205ENST00000537706 DQX1Q8TE96 717 aaKnown RBP9.27□□□□□ -0.93
USP28-205ENST00000537706 STAMBPL1Q96FJ0 436 aa9.27□□□□□ -0.93
USP28-205ENST00000537706 SLC39A13Q96H72 371 aa9.27□□□□□ -0.93
USP28-205ENST00000537706 TSPAN16Q9UKR8 245 aa9.27□□□□□ -0.93
USP28-205ENST00000537706 KLF2Q9Y5W3 355 aaPredicted RBP9.27□□□□□ -0.93
USP28-205ENST00000537706 DGKBQ9Y6T7 804 aa9.27□□□□□ -0.93
USP28-205ENST00000537706 POLR1CO15160 346 aaPredicted RBP9.27□□□□□ -0.93
USP28-205ENST00000537706 LRRTM2O43300 516 aa9.27□□□□□ -0.93
USP28-205ENST00000537706 CLDN11O75508 207 aa9.27□□□□□ -0.93
USP28-205ENST00000537706 CCNYL3P0C7X3 344 aa9.27□□□□□ -0.93
USP28-205ENST00000537706 RRM1P23921 792 aa9.27□□□□□ -0.93
USP28-205ENST00000537706 CD1CP29017 333 aa9.27□□□□□ -0.93
USP28-205ENST00000537706 AMPD3Q01432 767 aa9.27□□□□□ -0.93
USP28-205ENST00000537706 ART3Q13508 389 aa9.27□□□□□ -0.93
USP28-205ENST00000537706 RAPGEF1Q13905 1077 aa9.27□□□□□ -0.93
USP28-205ENST00000537706 NR1D2Q14995 579 aa9.27□□□□□ -0.93
USP28-205ENST00000537706 LRRC14Q15048 493 aa9.27□□□□□ -0.93
USP28-205ENST00000537706 EFHC1Q5JVL4 640 aa9.27□□□□□ -0.93
USP28-205ENST00000537706 FAM26FQ5R3K3 315 aa9.27□□□□□ -0.93
USP28-205ENST00000537706 PAPD7Q5XG87 772 aaKnown RBP9.27□□□□□ -0.93
USP28-205ENST00000537706 SLC6A19Q695T7 634 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms