RNA–Protein interactions for RNA: ENST00000537408.1

CLSTN3-207, Transcript of calsyntenin 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,296 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-207ENST00000537408 ATAD5Q96QE3 1844 aa10.98□□□□□ -0.65
CLSTN3-207ENST00000537408 TK2O00142 265 aa10.98□□□□□ -0.65
CLSTN3-207ENST00000537408 PLOD2O00469 737 aa10.98□□□□□ -0.65
CLSTN3-207ENST00000537408 USP12O75317 370 aa10.98□□□□□ -0.65
CLSTN3-207ENST00000537408 PGK1P00558 417 aa10.98□□□□□ -0.65
CLSTN3-207ENST00000537408 GLULP15104 373 aa10.98□□□□□ -0.65
CLSTN3-207ENST00000537408 TNNI1P19237 187 aa10.98□□□□□ -0.65
CLSTN3-207ENST00000537408 SLC7A1P30825 629 aa10.98□□□□□ -0.65
CLSTN3-207ENST00000537408 OR3A3P47888 321 aa10.98□□□□□ -0.65
CLSTN3-207ENST00000537408 HLCSP50747 726 aa10.98□□□□□ -0.65
CLSTN3-207ENST00000537408 HYIQ5T013 277 aa10.98□□□□□ -0.65
CLSTN3-207ENST00000537408 UNC5AQ6ZN44 842 aa10.98□□□□□ -0.65
CLSTN3-207ENST00000537408 LACC1Q8IV20 430 aa10.98□□□□□ -0.65
CLSTN3-207ENST00000537408 ZNF384Q8TF68 577 aa10.98□□□□□ -0.65
CLSTN3-207ENST00000537408 CDKL2Q92772 493 aa10.98□□□□□ -0.65
CLSTN3-207ENST00000537408 ZUFSPQ96AP4 578 aa10.98□□□□□ -0.65
CLSTN3-207ENST00000537408 SLC39A13Q96H72 371 aa10.98□□□□□ -0.65
CLSTN3-207ENST00000537408 KLHL32Q96NJ5 620 aa10.98□□□□□ -0.65
CLSTN3-207ENST00000537408 TOR4AQ9NXH8 423 aa10.98□□□□□ -0.65
CLSTN3-207ENST00000537408 UGT2A1Q9Y4X1 527 aa10.98□□□□□ -0.65
CLSTN3-207ENST00000537408 TCRBV9S1A1TA0A576 114 aa10.98□□□□□ -0.65
CLSTN3-207ENST00000537408 HNRNPDLO14979 420 aaKnown RBP10.98□□□□□ -0.65
CLSTN3-207ENST00000537408 VAPBO95292 243 aa10.98□□□□□ -0.65
CLSTN3-207ENST00000537408 GJA5P36382 358 aa10.98□□□□□ -0.65
CLSTN3-207ENST00000537408 AP2S1P53680 142 aaPredicted RBP10.98□□□□□ -0.65
CLSTN3-207ENST00000537408 RPL10AP62906 217 aaKnown RBP10.98□□□□□ -0.65
CLSTN3-207ENST00000537408 ECM1Q16610 540 aa10.98□□□□□ -0.65
CLSTN3-207ENST00000537408 FNBP1LQ5T0N5 605 aa10.98□□□□□ -0.65
CLSTN3-207ENST00000537408 CDHR3Q6ZTQ4 885 aa10.98□□□□□ -0.65
CLSTN3-207ENST00000537408 OR7A2PQ8NGA2 310 aa10.98□□□□□ -0.65
CLSTN3-207ENST00000537408 NPLOC4Q8TAT6 608 aa10.98□□□□□ -0.65
CLSTN3-207ENST00000537408 TRAF3IP1Q8TDR0 691 aaPredicted RBP10.98□□□□□ -0.65
CLSTN3-207ENST00000537408 RCN3Q96D15 328 aa10.98□□□□□ -0.65
CLSTN3-207ENST00000537408 MRPL47Q9HD33 250 aaKnown RBP10.98□□□□□ -0.65
CLSTN3-207ENST00000537408 TEKT2Q9UIF3 430 aa10.98□□□□□ -0.65
CLSTN3-207ENST00000537408 RRN3P2A6NIE6 340 aa10.97□□□□□ -0.65
CLSTN3-207ENST00000537408 DUSP11O75319 330 aaKnown RBP10.97□□□□□ -0.65
CLSTN3-207ENST00000537408 DBTP11182 482 aaKnown RBP10.97□□□□□ -0.65
CLSTN3-207ENST00000537408 IMPDH1P20839 514 aa10.97□□□□□ -0.65
CLSTN3-207ENST00000537408 MATN1P21941 496 aa10.97□□□□□ -0.65
CLSTN3-207ENST00000537408 CFL1P23528 166 aaKnown RBP10.97□□□□□ -0.65
CLSTN3-207ENST00000537408 GABRB2P47870 512 aa10.97□□□□□ -0.65
CLSTN3-207ENST00000537408 POLD3Q15054 466 aaPredicted RBP10.97□□□□□ -0.65
CLSTN3-207ENST00000537408 DUSP7Q16829 419 aa10.97□□□□□ -0.65
CLSTN3-207ENST00000537408 NHSL2Q5HYW2 709 aa10.97□□□□□ -0.65
CLSTN3-207ENST00000537408 NDUFAF5Q5TEU4 345 aa10.97□□□□□ -0.65
CLSTN3-207ENST00000537408 IER5Q5VY09 327 aa10.97□□□□□ -0.65
CLSTN3-207ENST00000537408 CYP20A1Q6UW02 462 aa10.97□□□□□ -0.65
CLSTN3-207ENST00000537408 TAB3Q8N5C8 712 aaPredicted RBP10.97□□□□□ -0.65
CLSTN3-207ENST00000537408 ANKFN1Q8N957 763 aa10.97□□□□□ -0.65
CLSTN3-207ENST00000537408 ASB9Q96DX5 294 aa10.97□□□□□ -0.65
CLSTN3-207ENST00000537408 REEP2Q9BRK0 252 aa10.97□□□□□ -0.65
CLSTN3-207ENST00000537408 HERPUD2Q9BSE4 406 aa10.97□□□□□ -0.65
CLSTN3-207ENST00000537408 TCF7L2Q9NQB0 619 aa10.97□□□□□ -0.65
CLSTN3-207ENST00000537408 KMT5AQ9NQR1 393 aa10.97□□□□□ -0.65
CLSTN3-207ENST00000537408 PCDHGC3Q9UN70 934 aa10.97□□□□□ -0.65
CLSTN3-207ENST00000537408 COL2A1P02458 1487 aaPredicted RBP10.97□□□□□ -0.65
CLSTN3-207ENST00000537408 COL24A1Q17RW2 1714 aa10.97□□□□□ -0.65
CLSTN3-207ENST00000537408 NOS1APO75052 506 aaPredicted RBP10.97□□□□□ -0.65
CLSTN3-207ENST00000537408 SEC24AO95486 1093 aa10.97□□□□□ -0.65
CLSTN3-207ENST00000537408 ELK3P41970 407 aa10.97□□□□□ -0.65
CLSTN3-207ENST00000537408 NSFP46459 744 aaKnown RBP10.97□□□□□ -0.65
CLSTN3-207ENST00000537408 B2MP61769 119 aa10.97□□□□□ -0.65
CLSTN3-207ENST00000537408 BNC1Q01954 994 aa10.97□□□□□ -0.65
CLSTN3-207ENST00000537408 CEACAM7Q14002 265 aa10.97□□□□□ -0.65
CLSTN3-207ENST00000537408 TRIM25Q14258 630 aaKnown RBP10.97□□□□□ -0.65
CLSTN3-207ENST00000537408 CCDC142Q17RM4 750 aa10.97□□□□□ -0.65
CLSTN3-207ENST00000537408 SYCE2Q6PIF2 218 aa10.97□□□□□ -0.65
CLSTN3-207ENST00000537408 UTS2BQ765I0 119 aa10.97□□□□□ -0.65
CLSTN3-207ENST00000537408 POMGNT1Q8WZA1 660 aa10.97□□□□□ -0.65
CLSTN3-207ENST00000537408 METTL2AQ96IZ6 378 aaKnown RBP10.97□□□□□ -0.65
CLSTN3-207ENST00000537408 TAAR1Q96RJ0 339 aa10.97□□□□□ -0.65
CLSTN3-207ENST00000537408 SCUBE2Q9NQ36 999 aa10.97□□□□□ -0.65
CLSTN3-207ENST00000537408 NDFIP2Q9NV92 336 aa10.97□□□□□ -0.65
CLSTN3-207ENST00000537408 PNPOQ9NVS9 261 aa10.97□□□□□ -0.65
CLSTN3-207ENST00000537408 UCKL1Q9NWZ5 548 aa10.97□□□□□ -0.65
CLSTN3-207ENST00000537408 NPAP1Q9NZP6 1156 aa10.97□□□□□ -0.65
CLSTN3-207ENST00000537408 SLC9A2Q9UBY0 812 aa10.97□□□□□ -0.65
CLSTN3-207ENST00000537408 MOXD2PA6NHM9 499 aa10.97□□□□□ -0.65
CLSTN3-207ENST00000537408 SLC22A2O15244 555 aa10.97□□□□□ -0.65
CLSTN3-207ENST00000537408 EIF3DO15371 548 aaKnown RBP eCLIP10.97□□□□□ -0.65
CLSTN3-207ENST00000537408 ITGAVP06756 1048 aa10.97□□□□□ -0.65
CLSTN3-207ENST00000537408 MBL2P11226 248 aaPredicted RBP10.97□□□□□ -0.65
CLSTN3-207ENST00000537408 IL10P22301 178 aa10.97□□□□□ -0.65
CLSTN3-207ENST00000537408 RPL10P27635 214 aaKnown RBP10.97□□□□□ -0.65
CLSTN3-207ENST00000537408 SFNP31947 248 aa10.97□□□□□ -0.65
CLSTN3-207ENST00000537408 SSTR3P32745 418 aaPredicted RBP10.97□□□□□ -0.65
CLSTN3-207ENST00000537408 RHDQ02161 417 aa10.97□□□□□ -0.65
CLSTN3-207ENST00000537408 BNIP2Q12982 314 aa10.97□□□□□ -0.65
CLSTN3-207ENST00000537408 ANO4Q32M45 955 aa10.97□□□□□ -0.65
CLSTN3-207ENST00000537408 PRAMEF19Q5SWL8 479 aa10.97□□□□□ -0.65
CLSTN3-207ENST00000537408 MFSD2AQ8NA29 543 aa10.97□□□□□ -0.65
CLSTN3-207ENST00000537408 OR5H6Q8NGV6 325 aa10.97□□□□□ -0.65
CLSTN3-207ENST00000537408 MCRS1Q96EZ8 462 aa10.97□□□□□ -0.65
CLSTN3-207ENST00000537408 EIF2AK1Q9BQI3 630 aaKnown RBP10.97□□□□□ -0.65
CLSTN3-207ENST00000537408 MTMR12Q9C0I1 747 aa10.97□□□□□ -0.65
CLSTN3-207ENST00000537408 ADNPQ9H2P0 1102 aa10.97□□□□□ -0.65
CLSTN3-207ENST00000537408 SMOXQ9NWM0 555 aa10.97□□□□□ -0.65
CLSTN3-207ENST00000537408 PCDHB4Q9Y5E5 795 aa10.97□□□□□ -0.65
CLSTN3-207ENST00000537408 INO80B-WBP1J3KQ70 363 aa10.96□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms