RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 MAGEH1Q9H213 219 aa4.28□□□□□ -1.72
CD44-235ENST00000532339 MLXIPLQ9NP71 852 aa4.28□□□□□ -1.72
CD44-235ENST00000532339 RXFP3Q9NSD7 469 aa4.28□□□□□ -1.72
CD44-235ENST00000532339 WWOXQ9NZC7 414 aa4.28□□□□□ -1.72
CD44-235ENST00000532339 RGL1Q9NZL6 768 aa4.28□□□□□ -1.72
CD44-235ENST00000532339 IGSF9Q9P2J2 1179 aa4.28□□□□□ -1.72
CD44-235ENST00000532339 VPS4AQ9UN37 437 aa4.28□□□□□ -1.72
CD44-235ENST00000532339 OTOGLQ3ZCN5 2332 aa4.28□□□□□ -1.72
CD44-235ENST00000532339 KIF20BQ96Q89 1820 aa4.28□□□□□ -1.72
CD44-235ENST00000532339 MED23Q9ULK4 1368 aa4.27□□□□□ -1.73
CD44-235ENST00000532339 LOC400499M0QZD8 3231 aa4.27□□□□□ -1.73
CD44-235ENST00000532339 UTYO14607 1347 aa4.27□□□□□ -1.73
CD44-235ENST00000532339 CNTNAP2Q9UHC6 1331 aa4.27□□□□□ -1.73
CD44-235ENST00000532339 CCDC187A0A096LP49 1063 aa4.27□□□□□ -1.73
CD44-235ENST00000532339 SLC22A23A1A5C7 686 aa4.27□□□□□ -1.73
CD44-235ENST00000532339 H3BQ06 376 aaPredicted RBP4.27□□□□□ -1.73
CD44-235ENST00000532339 KCNQ3O43525 872 aa4.27□□□□□ -1.73
CD44-235ENST00000532339 CBFA2T3O75081 653 aa4.27□□□□□ -1.73
CD44-235ENST00000532339 ARP10275 920 aa4.27□□□□□ -1.73
CD44-235ENST00000532339 CSF2RAP15509 400 aa4.27□□□□□ -1.73
CD44-235ENST00000532339 TFEBP19484 476 aa4.27□□□□□ -1.73
CD44-235ENST00000532339 DRD1P21728 446 aa4.27□□□□□ -1.73
CD44-235ENST00000532339 MMP8P22894 467 aa4.27□□□□□ -1.73
CD44-235ENST00000532339 IDUAP35475 653 aa4.27□□□□□ -1.73
CD44-235ENST00000532339 SERPINF1P36955 418 aa4.27□□□□□ -1.73
CD44-235ENST00000532339 FOXO1Q12778 655 aa4.27□□□□□ -1.73
CD44-235ENST00000532339 SPARCL1Q14515 664 aa4.27□□□□□ -1.73
CD44-235ENST00000532339 SEMA3AQ14563 771 aa4.27□□□□□ -1.73
CD44-235ENST00000532339 RALBP1Q15311 655 aa4.27□□□□□ -1.73
CD44-235ENST00000532339 SOWAHCQ53LP3 525 aaPredicted RBP4.27□□□□□ -1.73
CD44-235ENST00000532339 ALFQ53S48 1182 aa4.27□□□□□ -1.73
CD44-235ENST00000532339 FAXCQ5TGI0 409 aa4.27□□□□□ -1.73
CD44-235ENST00000532339 ABLIM2Q6H8Q1 611 aa4.27□□□□□ -1.73
CD44-235ENST00000532339 FBXO38Q6PIJ6 1188 aa4.27□□□□□ -1.73
CD44-235ENST00000532339 USP17L6PQ6QN14 398 aa4.27□□□□□ -1.73
CD44-235ENST00000532339 MEPCEQ7L2J0 689 aaKnown RBP4.27□□□□□ -1.73
CD44-235ENST00000532339 ANKRD33Q7Z3H0 272 aa4.27□□□□□ -1.73
CD44-235ENST00000532339 NGEFQ8N5V2 710 aa4.27□□□□□ -1.73
CD44-235ENST00000532339 FAM71BQ8TC56 605 aa4.27□□□□□ -1.73
CD44-235ENST00000532339 TRAPPC12Q8WVT3 735 aa4.27□□□□□ -1.73
CD44-235ENST00000532339 AKAP1Q92667 903 aaKnown RBP eCLIP4.27□□□□□ -1.73
CD44-235ENST00000532339 MAGEB5Q9BZ81 275 aa4.27□□□□□ -1.73
CD44-235ENST00000532339 TMEM39BQ9GZU3 492 aa4.27□□□□□ -1.73
CD44-235ENST00000532339 COA1Q9GZY4 146 aa4.27□□□□□ -1.73
CD44-235ENST00000532339 NECTIN3Q9NQS3 549 aa4.27□□□□□ -1.73
CD44-235ENST00000532339 PAPOLBQ9NRJ5 636 aaKnown RBP4.27□□□□□ -1.73
CD44-235ENST00000532339 DECR2Q9NUI1 292 aa4.27□□□□□ -1.73
CD44-235ENST00000532339 ASNSD1Q9NWL6 643 aa4.27□□□□□ -1.73
CD44-235ENST00000532339 DACT1Q9NYF0 836 aa4.27□□□□□ -1.73
CD44-235ENST00000532339 GTF2A1LQ9UNN4 478 aa4.27□□□□□ -1.73
CD44-235ENST00000532339 PCDHB2Q9Y5E7 798 aa4.27□□□□□ -1.73
CD44-235ENST00000532339 PCDHAC2Q9Y5I4 1007 aa4.27□□□□□ -1.73
CD44-235ENST00000532339 SPTA1P02549 2419 aa4.27□□□□□ -1.73
CD44-235ENST00000532339 NUP98P52948 1817 aa4.27□□□□□ -1.73
CD44-235ENST00000532339 MYO9AB2RTY4 2548 aa4.27□□□□□ -1.73
CD44-235ENST00000532339 FRMPD3Q5JV73 1810 aa4.26□□□□□ -1.73
CD44-235ENST00000532339 ECM29Q5VYK3 1845 aa4.26□□□□□ -1.73
CD44-235ENST00000532339 A0A1B0GUL7 405 aa4.26□□□□□ -1.73
CD44-235ENST00000532339 TLX3O43711 291 aaPredicted RBP4.26□□□□□ -1.73
CD44-235ENST00000532339 SYF2O95926 243 aaKnown RBP4.26□□□□□ -1.73
CD44-235ENST00000532339 HSD3B1P14060 373 aa4.26□□□□□ -1.73
CD44-235ENST00000532339 ST6GAL1P15907 406 aa4.26□□□□□ -1.73
CD44-235ENST00000532339 TNFRSF1BP20333 461 aa4.26□□□□□ -1.73
CD44-235ENST00000532339 SLC5A2P31639 672 aa4.26□□□□□ -1.73
CD44-235ENST00000532339 HOXD12P35452 270 aa4.26□□□□□ -1.73
CD44-235ENST00000532339 IGHMBP2P38935 993 aaKnown RBP4.26□□□□□ -1.73
CD44-235ENST00000532339 RGS2P41220 211 aa4.26□□□□□ -1.73
CD44-235ENST00000532339 ALDH7A1P49419 539 aaKnown RBP4.26□□□□□ -1.73
CD44-235ENST00000532339 NANOS2P60321 138 aaKnown RBP4.26□□□□□ -1.73
CD44-235ENST00000532339 ARHGAP8P85298 464 aa4.26□□□□□ -1.73
CD44-235ENST00000532339 SHC2P98077 582 aa4.26□□□□□ -1.73
CD44-235ENST00000532339 BFSP2Q13515 415 aa4.26□□□□□ -1.73
CD44-235ENST00000532339 PTK2BQ14289 1009 aa4.26□□□□□ -1.73
CD44-235ENST00000532339 POSTNQ15063 836 aa4.26□□□□□ -1.73
CD44-235ENST00000532339 MTHFSDQ2M296 383 aaKnown RBP4.26□□□□□ -1.73
CD44-235ENST00000532339 MFSD14CQ5VZR4 134 aa4.26□□□□□ -1.73
CD44-235ENST00000532339 FAM90A2PQ658T7 463 aa4.26□□□□□ -1.73
CD44-235ENST00000532339 MRNIPQ6NTE8 343 aa4.26□□□□□ -1.73
CD44-235ENST00000532339 ZNF549Q6P9A3 640 aa4.26□□□□□ -1.73
CD44-235ENST00000532339 CRTC1Q6UUV9 634 aa4.26□□□□□ -1.73
CD44-235ENST00000532339 KIAA0408Q6ZU52 694 aa4.26□□□□□ -1.73
CD44-235ENST00000532339 CCDC150Q8NCX0 1101 aa4.26□□□□□ -1.73
CD44-235ENST00000532339 STYXQ8WUJ0 223 aa4.26□□□□□ -1.73
CD44-235ENST00000532339 OVCA2Q8WZ82 227 aa4.26□□□□□ -1.73
CD44-235ENST00000532339 KAT2BQ92831 832 aa4.26□□□□□ -1.73
CD44-235ENST00000532339 SLC25A28Q96A46 364 aa4.26□□□□□ -1.73
CD44-235ENST00000532339 TBC1D20Q96BZ9 403 aa4.26□□□□□ -1.73
CD44-235ENST00000532339 PRDM16Q9HAZ2 1276 aa4.26□□□□□ -1.73
CD44-235ENST00000532339 TMEM8AQ9HCN3 771 aa4.26□□□□□ -1.73
CD44-235ENST00000532339 LRFN1Q9P244 771 aa4.26□□□□□ -1.73
CD44-235ENST00000532339 TBX21Q9UL17 535 aa4.26□□□□□ -1.73
CD44-235ENST00000532339 LZTS1Q9Y250 596 aa4.26□□□□□ -1.73
CD44-235ENST00000532339 PRYO14603 147 aa4.25□□□□□ -1.73
CD44-235ENST00000532339 PRPF4O43172 522 aaKnown RBP eCLIP4.25□□□□□ -1.73
CD44-235ENST00000532339 CTIFO43310 598 aaKnown RBP4.25□□□□□ -1.73
CD44-235ENST00000532339 SMAD6O43541 496 aaKnown RBP4.25□□□□□ -1.73
CD44-235ENST00000532339 TNFRSF6BO95407 300 aa4.25□□□□□ -1.73
CD44-235ENST00000532339 ITGA5P08648 1049 aa4.25□□□□□ -1.73
CD44-235ENST00000532339 DHRS4L1P0CG22 281 aa4.25□□□□□ -1.73
CD44-235ENST00000532339 EGR1P18146 543 aa4.25□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms