RNA–Protein interactions for RNA: ENST00000496043.5

PTPRF-214, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 415 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-214ENST00000496043 LHX3Q9UBR4 397 aa12.9□□□□□ -0.34
PTPRF-214ENST00000496043 DKK4Q9UBT3 224 aa12.9□□□□□ -0.34
PTPRF-214ENST00000496043 GGT7Q9UJ14 662 aa12.9□□□□□ -0.34
PTPRF-214ENST00000496043 ITM2BQ9Y287 266 aa12.9□□□□□ -0.34
PTPRF-214ENST00000496043 DOCK9Q9BZ29 2069 aa12.9□□□□□ -0.34
PTPRF-214ENST00000496043 A0A1W2PQJ5 194 aa12.89□□□□□ -0.35
PTPRF-214ENST00000496043 SYCE3A1L190 88 aa12.89□□□□□ -0.35
PTPRF-214ENST00000496043 GOLGA6L19H0YKK7 550 aa12.89□□□□□ -0.35
PTPRF-214ENST00000496043 H3BM21 787 aa12.89□□□□□ -0.35
PTPRF-214ENST00000496043 TOR1BO14657 336 aa12.89□□□□□ -0.35
PTPRF-214ENST00000496043 SCAMP1O15126 338 aa12.89□□□□□ -0.35
PTPRF-214ENST00000496043 INSIG1O15503 277 aa12.89□□□□□ -0.35
PTPRF-214ENST00000496043 PALMO75781 387 aa12.89□□□□□ -0.35
PTPRF-214ENST00000496043 CSF2P04141 144 aa12.89□□□□□ -0.35
PTPRF-214ENST00000496043 PCK1P35558 622 aa12.89□□□□□ -0.35
PTPRF-214ENST00000496043 CSNK1DP48730 415 aa12.89□□□□□ -0.35
PTPRF-214ENST00000496043 DUSP3P51452 185 aaPredicted RBP12.89□□□□□ -0.35
PTPRF-214ENST00000496043 YPEL5P62699 121 aa12.89□□□□□ -0.35
PTPRF-214ENST00000496043 ELP6Q0PNE2 266 aa12.89□□□□□ -0.35
PTPRF-214ENST00000496043 TARDBPQ13148 414 aaKnown RBP eCLIP12.89□□□□□ -0.35
PTPRF-214ENST00000496043 PDE1CQ14123 709 aaPredicted RBP12.89□□□□□ -0.35
PTPRF-214ENST00000496043 PTK2BQ14289 1009 aa12.89□□□□□ -0.35
PTPRF-214ENST00000496043 FZD2Q14332 565 aa12.89□□□□□ -0.35
PTPRF-214ENST00000496043 TMEM52BQ4KMG9 183 aa12.89□□□□□ -0.35
PTPRF-214ENST00000496043 BOLA3Q53S33 107 aa12.89□□□□□ -0.35
PTPRF-214ENST00000496043 PPP6R3Q5H9R7 873 aaPredicted RBP12.89□□□□□ -0.35
PTPRF-214ENST00000496043 LUZP1Q86V48 1076 aa12.89□□□□□ -0.35
PTPRF-214ENST00000496043 VPS36Q86VN1 386 aa12.89□□□□□ -0.35
PTPRF-214ENST00000496043 CACTIN-AS1Q8N1I8 211 aa12.89□□□□□ -0.35
PTPRF-214ENST00000496043 LZTR1Q8N653 840 aa12.89□□□□□ -0.35
PTPRF-214ENST00000496043 IQCDQ96DY2 449 aa12.89□□□□□ -0.35
PTPRF-214ENST00000496043 ZNF641Q96N77 438 aaPredicted RBP12.89□□□□□ -0.35
PTPRF-214ENST00000496043 PEBP4Q96S96 227 aa12.89□□□□□ -0.35
PTPRF-214ENST00000496043 DUSP23Q9BVJ7 150 aa12.89□□□□□ -0.35
PTPRF-214ENST00000496043 TRIM7Q9C029 511 aa12.89□□□□□ -0.35
PTPRF-214ENST00000496043 PDFQ9HBH1 243 aa12.89□□□□□ -0.35
PTPRF-214ENST00000496043 GPR27Q9NS67 375 aa12.89□□□□□ -0.35
PTPRF-214ENST00000496043 NLGN3Q9NZ94 848 aa12.89□□□□□ -0.35
PTPRF-214ENST00000496043 CSNK1G3Q9Y6M4 447 aa12.89□□□□□ -0.35
PTPRF-214ENST00000496043 PLXNB3Q9ULL4 1909 aa12.89□□□□□ -0.35
PTPRF-214ENST00000496043 COL5A1P20908 1838 aaPredicted RBP12.88□□□□□ -0.35
PTPRF-214ENST00000496043 TRPM6Q9BX84 2022 aa12.88□□□□□ -0.35
PTPRF-214ENST00000496043 KNTC1P50748 2209 aa12.88□□□□□ -0.35
PTPRF-214ENST00000496043 DFFAO00273 331 aa12.88□□□□□ -0.35
PTPRF-214ENST00000496043 FFAR2O15552 330 aa12.88□□□□□ -0.35
PTPRF-214ENST00000496043 SPINT1O43278 529 aa12.88□□□□□ -0.35
PTPRF-214ENST00000496043 LRCH4O75427 683 aa12.88□□□□□ -0.35
PTPRF-214ENST00000496043 SERPING1P05155 500 aa12.88□□□□□ -0.35
PTPRF-214ENST00000496043 ITIH2P19823 946 aa12.88□□□□□ -0.35
PTPRF-214ENST00000496043 PFN3P60673 137 aa12.88□□□□□ -0.35
PTPRF-214ENST00000496043 ZBED6P86452 979 aa12.88□□□□□ -0.35
PTPRF-214ENST00000496043 NSUN2Q08J23 767 aaKnown RBP eCLIP12.88□□□□□ -0.35
PTPRF-214ENST00000496043 TDRD12Q587J7 1177 aaKnown RBP12.88□□□□□ -0.35
PTPRF-214ENST00000496043 CFAP58Q5T655 872 aa12.88□□□□□ -0.35
PTPRF-214ENST00000496043 HES3Q5TGS1 186 aa12.88□□□□□ -0.35
PTPRF-214ENST00000496043 AFMIDQ63HM1 303 aa12.88□□□□□ -0.35
PTPRF-214ENST00000496043 SRLQ86TD4 932 aa12.88□□□□□ -0.35
PTPRF-214ENST00000496043 PARGQ86W56 976 aa12.88□□□□□ -0.35
PTPRF-214ENST00000496043 CPLX3Q8WVH0 158 aa12.88□□□□□ -0.35
PTPRF-214ENST00000496043 BTN2A2Q8WVV5 523 aa12.88□□□□□ -0.35
PTPRF-214ENST00000496043 EXOC2Q96KP1 924 aa12.88□□□□□ -0.35
PTPRF-214ENST00000496043 TUBGCP5Q96RT8 1024 aa12.88□□□□□ -0.35
PTPRF-214ENST00000496043 ZWILCHQ9H900 591 aa12.88□□□□□ -0.35
PTPRF-214ENST00000496043 EVA1BQ9NVM1 165 aa12.88□□□□□ -0.35
PTPRF-214ENST00000496043 CWC15Q9P013 229 aaKnown RBP12.88□□□□□ -0.35
PTPRF-214ENST00000496043 GOLGA4Q13439 2230 aaKnown RBP12.88□□□□□ -0.35
PTPRF-214ENST00000496043 IGF2RP11717 2491 aa12.87□□□□□ -0.35
PTPRF-214ENST00000496043 CHD5Q8TDI0 1954 aa12.87□□□□□ -0.35
PTPRF-214ENST00000496043 K7ESM1 405 aa12.87□□□□□ -0.35
PTPRF-214ENST00000496043 BUB1BO60566 1050 aaPredicted RBP12.87□□□□□ -0.35
PTPRF-214ENST00000496043 PIGNO95427 931 aa12.87□□□□□ -0.35
PTPRF-214ENST00000496043 GIMD1P0DJR0 217 aa12.87□□□□□ -0.35
PTPRF-214ENST00000496043 CKMT1AP12532 417 aa12.87□□□□□ -0.35
PTPRF-214ENST00000496043 NME1P15531 152 aaKnown RBP12.87□□□□□ -0.35
PTPRF-214ENST00000496043 JUNDP17535 347 aa12.87□□□□□ -0.35
PTPRF-214ENST00000496043 PTMSP20962 102 aa12.87□□□□□ -0.35
PTPRF-214ENST00000496043 PBX1P40424 430 aa12.87□□□□□ -0.35
PTPRF-214ENST00000496043 ARL4AP40617 200 aa12.87□□□□□ -0.35
PTPRF-214ENST00000496043 RENBPP51606 427 aa12.87□□□□□ -0.35
PTPRF-214ENST00000496043 THOP1P52888 689 aa12.87□□□□□ -0.35
PTPRF-214ENST00000496043 CLDN6P56747 220 aa12.87□□□□□ -0.35
PTPRF-214ENST00000496043 IL10RBQ08334 325 aa12.87□□□□□ -0.35
PTPRF-214ENST00000496043 PIGHQ14442 188 aaPredicted RBP12.87□□□□□ -0.35
PTPRF-214ENST00000496043 RFTN1Q14699 578 aaPredicted RBP12.87□□□□□ -0.35
PTPRF-214ENST00000496043 NFKBIBQ15653 356 aa12.87□□□□□ -0.35
PTPRF-214ENST00000496043 UGP2Q16851 508 aa12.87□□□□□ -0.35
PTPRF-214ENST00000496043 LRRC73Q5JTD7 316 aa12.87□□□□□ -0.35
PTPRF-214ENST00000496043 HGSNATQ68CP4 663 aa12.87□□□□□ -0.35
PTPRF-214ENST00000496043 ERAP2Q6P179 960 aa12.87□□□□□ -0.35
PTPRF-214ENST00000496043 BRAT1Q6PJG6 821 aa12.87□□□□□ -0.35
PTPRF-214ENST00000496043 CAMK1DQ8IU85 385 aa12.87□□□□□ -0.35
PTPRF-214ENST00000496043 ARHGAP12Q8IWW6 846 aa12.87□□□□□ -0.35
PTPRF-214ENST00000496043 FAM181AQ8N9Y4 354 aa12.87□□□□□ -0.35
PTPRF-214ENST00000496043 TSEN2Q8NCE0 465 aaKnown RBP12.87□□□□□ -0.35
PTPRF-214ENST00000496043 RFFLQ8WZ73 363 aa12.87□□□□□ -0.35
PTPRF-214ENST00000496043 APOLD1Q96LR9 279 aa12.87□□□□□ -0.35
PTPRF-214ENST00000496043 WRAP53Q9BUR4 548 aaKnown RBP12.87□□□□□ -0.35
PTPRF-214ENST00000496043 ATP13A3Q9H7F0 1226 aa12.87□□□□□ -0.35
PTPRF-214ENST00000496043 SP110Q9HB58 689 aa12.87□□□□□ -0.35
PTPRF-214ENST00000496043 USP29Q9HBJ7 922 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms